BAC Information

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BAC

Clone NameB6Ng01-175J16
Chromosome11 (Build37)
Map Location 95,815,490 - 95,816,295
singlet/doubletsinglet
Overlap genenone
Upstream geneSgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2
Downstream geneIgf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175J16.bB6Ng01-175J16.g
ACCGA003365GA003366
length953808
definitionB6Ng01-175J16.b B6Ng01-175J16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctggtgtggcgagtcaccacacacagaacttgaggtgctgagta
ttgaatctagggtttcatgcatactaggtaagcattctatcaactaaact
acattcccagccaaaactagcttaccttttacaataagtaaataaaagca
gcgtaagaagattagggacaatagaggttggacggctgccatattaaatg
gagacaagctttcgagcaagagctaaagaaaactattgagtgagtctcat
ggctgtaaggcagcagttctcaacctgtgagtctcaattcctttggtgtt
cgaatgacccttccatgggggtcacatattagatatcctccatatcagat
acttatattacaatttgtaatggtagcaaaattacagttctggaatagca
atgaaatgtcatgagtggggtcatcataacaggagacactgtgtcaagag
gttgcagcattaggatagttgagaaccactgttgtaaagggtaagggact
cggagccagagcaaagcatcctgggaaagaaatgttagtagacaatgggg
tggggtaagaaatctatctatctatctatctatctatctatctatctatc
tatctatctatccatctatcgatctatccatccatccatccacccaccca
cccactcatctatctatctatctatctatctatctatctatctatctatc
tatctatctatctatctggtttttctagacaggatttctctgtgcaattc
ctggctgtcctagaaattcactctgtagaccaggctgggctttgaacttc
caagattctccttgccttctccctcttggagttgctgggcttgaaaggtg
tgttaccaccacatacctaagaacttttgatgttttgacccctgaactaa
tgagttacttttaataacagtattttcagattagaacttgggtgggggag
ttt
gaattctctgtcaccagagcatagaactgtttgagacagattattaggat
tagcaggcaccaggatgggctgaggtttcaaagccccatgcccagcccag
tctttctttctctttctgcctggggatccggatacaaagctcgcagctac
cactaccactctagcaccttgtctgtctgctttctgccaaggtgttcaca
gatgaaccctataaaattgtaagaagtccccaaattaaaggcgattttgt
ttttgtttttttcgagactgggtttctctgtatagaccaggctggcctcg
aactaagagattcgcctggctcttcttcccaagtgctagaattaaaggca
tgtgccaccactgcccagcaattaaagggttttttaagctgccttgggtc
atcatggggttttcttacagcaataataaaaacagtaactaagacagata
tttagcactttgagagccacaggaactcaaagtaaatcaatgtaattttt
tcgtttgtttggggttttttttttgttttgttttgttttgttttggtttg
gtttttggttttttcaagacagagtttctctgtatagccctggctgtcct
ggaactcactttgaagagcctgcctcttgcctcctgagtgctgggattaa
aggtgtgcaccaccacgccccgacttatcaatgtatttttattaatttaa
aaaaaatataaattttggctgggagtgacggtgcaaaccttaatcccaga
aactccgcagaagtgggaggatttttgtgaatttgagatcagtctgatca
tatattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_95815490_95816295
seq2: B6Ng01-175J16.g_68_875

seq1  GAATTCTCTGTCACCAGAGCATAGAACTGTTTGAGACAGATTATTAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTCACCAGAGCATAGAACTGTTTGAGACAGATTATTAGGAT  50

seq1  TAGCAGGCACCAGGATGGGCTGAGGTTTCAAAGCCCCATGCCCAGCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCACCAGGATGGGCTGAGGTTTCAAAGCCCCATGCCCAGCCCAG  100

seq1  TCTTTCTTTCTCTTTCTGCCTGGGGATCCGGATACAAAGCTCGCAGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTCTTTCTGCCTGGGGATCCGGATACAAAGCTCGCAGCTAC  150

seq1  CACTACCACTCTAGCACCTTGTCTGTCTGCTTTCTGCCAAGGTGTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCACTCTAGCACCTTGTCTGTCTGCTTTCTGCCAAGGTGTTCACA  200

seq1  GATGAACCCTATAAAATTGTAAGAAGTCCCCAAATTAAAGGCGATTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACCCTATAAAATTGTAAGAAGTCCCCAAATTAAAGGCGATTTTGT  250

seq1  TTTTGTTTTTTTCGAGACTGGGTTTCTCTGTATAGACCAGGCTGGCCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTCGAGACTGGGTTTCTCTGTATAGACCAGGCTGGCCTCG  300

seq1  AACTAAGAGATTCGCCTGGCTCTTCTTCCCAAGTGCTAGAATTAAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGAGATTCGCCTGGCTCTTCTTCCCAAGTGCTAGAATTAAAGGCA  350

seq1  TGTGCCACCACTGCCCAGCAATTAAAGGGTTTTTTAAGCTGCCTTGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACCACTGCCCAGCAATTAAAGGGTTTTTTAAGCTGCCTTGGGTC  400

seq1  ATCATGGGGTTTTCTTACAGCAATAATAAAAACAGTAACTAAGACAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGGGTTTTCTTACAGCAATAATAAAAACAGTAACTAAGACAGATA  450

seq1  TTTAGCACTTTGAGAGCCACAGGAACTCAAAGTAAATCAATGTAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCACTTTGAGAGCCACAGGAACTCAAAGTAAATCAATGTAATTTTT  500

seq1  TCGTTTGTTTGGGGTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTGGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTGTTTGGGGTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTGGTTTG  550

seq1  GTTTTTGGTTTTTTCAAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGTTTTTTCAAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCT  600

seq1  GGAACTCACTTTGAAGAGCCTGCCTC-TGCCTCCTGAGTGCTGGGATTAA  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAACTCACTTTGAAGAGCCTGCCTCTTGCCTCCTGAGTGCTGGGATTAA  650

seq1  AGGTGTGCACCACCACG-CCCGACTTATCAATGTAATTTTTATTAAATT-  697
      ||||||||||||||||| |||||||||||||||| ||||||||||| || 
seq2  AGGTGTGCACCACCACGCCCCGACTTATCAATGT-ATTTTTATTAATTTA  699

seq1  AAAAAAATATAAA-TTTGGCTGGGAGTGACGGTGCAAACCTTTAATCCCA  746
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  AAAAAAATATAAATTTTGGCTGGGAGTGACGGTGCAAACC-TTAATCCCA  748

seq1  G-AACTCGGCAGAAGTGGGAGGATTTTTGTGAATTTGAGACCAGCCTGAT  795
      | ||||| |||||||||||||||||||||||||||||||| ||| |||||
seq2  GAAACTCCGCAGAAGTGGGAGGATTTTTGTGAATTTGAGATCAGTCTGAT  798

seq1  CTATATATTGA  806
      | |||||||||
seq2  C-ATATATTGA  808