BAC Information

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BAC

Clone NameB6Ng01-176D19
Chromosome11 (Build37)
Map Location 4,277,833 - 4,411,735
singlet/doubletdoublet
Overlap geneHormad2, Mtmr3
Upstream geneLimk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif
Downstream geneLOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176D19.bB6Ng01-176D19.g
ACCGA003826GA003827
length9861,132
definitionB6Ng01-176D19.b B6Ng01-176D19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,410,766 - 4,411,735)(4,277,833 - 4,278,975)
sequence
gaattcagtagttgaggagttagaatattctatcttttcatgtttcttct
attcctagtttgtgatttgtgaatcaggtggtttgcttgtcccttctggt
tgtatttgtgtattgaattcttagcgagaaacttactcttggagccttac
tcactctaaaagaggagaaaagtcagtgtcaagccacacaaggtaaatca
cttgaacgtgattaagttcactcctacattagtagtgactgctggacaga
atatggcaaaactaatgtagactgtgctgtgaggttgtaactactcaggg
caaccagccacactaaatggatgagatgacaaggcagggaaaggttgaat
ataaagaaaaagaccaggctggtgagatggctcagcgattaagagcgcca
actgctcttccaaaggtcctgagttcaaatcccagcaaccagatggtggc
tcacaaccacccgtaatgaaatctgatgctctcttctggagtatatgaag
acagctacagtgtacttacatataattaataaaaataaataaataaataa
atactaaaaaaaaaagaaaaagacaagtggctaagctatggatgggaaaa
gaaaataggagatttagaaaaaaaataaaagtaacaataaaacaaaaaag
atatcctgcttgtgagaatgttttttagaaattagatgagggggatggag
agatggttcacggggtttaaagcacttgttgctcttgcagaagactcagg
ttcagtttcccagcatttacatggtggctcacaatctctctgttactata
atcccagcgatctgattcctttttattgtcttctgaaggggcaccaggca
aaatagtgttgtgtacgctttagaattttttagattctttttaaaaacct
tacttttagtaaggtgtacttaaatgcttttaccctccctttctagcccg
ccacccaccagatgttattgagaaaagaaacgttag
gaattcacactggattcacaagtgagtaaatgagaagtttgatgaagata
atgtagagttccagaggactctatactgattagttctaaacggttaaaaa
aaaagactgactttattatagagaagcctaacagataccaccctattcaa
atcaccaaggaaaaagttaacaatgggacaaatcaaaatcatttgctact
taaagtagtcattactcaacaccactctggagtacttaaacacacacaca
caccctgaatttaatcctgaggacacatgggtcagatgcatacgggacga
tcagggagacagttctattgaaacatgccacaatcagtgcaatcaaggaa
agacttcctaactaaaggaggcttaaggaatgtaacaactaaataagaat
aaagtcttaaggaattcacagatctaaatccaagtatgagattaggagtc
ttttaacataaatctgtcctcagcctactggtcatgaatagttcttacat
cttacccattttggcatagcaataaatataaccttggcaatcattttggt
aattttgccaattttgcataagtcaattaagctctgtctgacctggaccc
ttctgtaataaggaacagtattaggagagctggggaaactggggtggagt
ctaagggccacattacagttattctacaagtttatcctagcacggatggt
tgtactgtcactatggaggtgaatggttttatttctaggaattgcttaag
ttttctaggataatgaagcaacttgttcagggaaaaaaaaaaatctgatt
tgtgctgaacctgcagatttttctgcaaacctggcattatttcaaaataa
aagtaaacatataaaaatgttgatttttaggaaaatattttaaaggaaaa
ggacttagcattttctgctatatacatattttaaataatattttgggagg
cactaacttgtctctaacctacctacgactgctctgtgatgagtaagtga
ggtgtcaaaagcactgtgccagggacaggagatgaaaaagatggggaaag
aaattcaggaagggatgtcagttcacaagtcttgggctgggagccttaat
cagggaactcttcctccatcccttcctcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4410766_4411735
seq2: B6Ng01-176D19.b_45_1030 (reverse)

seq1  CTAACCTTTCTTT--TCCATTACCTCTGGTGGGTGGCGGGCTAG-AAGGG  47
      ||||| |||||||  || || || |||||||||||||||||||| |||||
seq2  CTAACGTTTCTTTTCTCAATAACATCTGGTGGGTGGCGGGCTAGAAAGGG  50

seq1  A-GGTTAAAGCATTTAAGTACA-CTTACT-AAAGT-AGGTTTTTAAAAA-  92
      | ||| |||||||||||||||| |||||| ||||| ||||||||||||| 
seq2  AGGGTAAAAGCATTTAAGTACACCTTACTAAAAGTAAGGTTTTTAAAAAG  100

seq1  AATCTAAAAAA-TCT-AAGCGTACACAACACTATTTTGCCTGGTGCCC--  138
      ||||||||||| ||| ||||||||||||||||||||||||||||||||  
seq2  AATCTAAAAAATTCTAAAGCGTACACAACACTATTTTGCCTGGTGCCCCT  150

seq1  TCAGAAGACAAT-AAAAGGAATCAGATCGCTGGGATTATAGTTACAGAG-  186
      |||||||||||| ||||||||||||||||||||||||||||| |||||| 
seq2  TCAGAAGACAATAAAAAGGAATCAGATCGCTGGGATTATAGTAACAGAGA  200

seq1  GATTGTGAGCCACCATGTAAATGCTGGG-AACTGAACCTGAGTCTTCTGC  235
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATTGTGAGCCACCATGTAAATGCTGGGAAACTGAACCTGAGTCTTCTGC  250

seq1  AAGAGCAACAAGTGCTTTAAA-CCCGTGAACCATCTCTCCATCCCCCTCA  284
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGAGCAACAAGTGCTTTAAACCCCGTGAACCATCTCTCCATCCCCCTCA  300

seq1  TCTAATTTCTAAAAAACATTCTCACAAGCAGGATATCTTTTTTGTTTTAT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTCTAAAAAACATTCTCACAAGCAGGATATCTTTTTTGTTTTAT  350

seq1  TGTTACTTTTATTTTTTTTCTAAATCTCCTATTTTCTTTTCCCATCCATA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTTTATTTTTTTTCTAAATCTCCTATTTTCTTTTCCCATCCATA  400

seq1  GCTTAGCCACTTGTCTTTTTCTTTTTTTTTTAGTATTTATTTATTTATTT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCCACTTGTCTTTTTCTTTTTTTTTTAGTATTTATTTATTTATTT  450

seq1  ATTTTTATTAATTATATGTAAGTACACTGTAGCTGTCTTCATATACTCCA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTAATTATATGTAAGTACACTGTAGCTGTCTTCATATACTCCA  500

seq1  GAAGAGAGCATCAGATTTCATTACGGGTGGTTGTGAGCCACCATCTGGTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGCATCAGATTTCATTACGGGTGGTTGTGAGCCACCATCTGGTT  550

seq1  GCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTTGGCGCTCTTAATC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTTGGCGCTCTTAATC  600

seq1  GCTGAGCCATCTCACCAGCCTGGTCTTTTTCTTTATATTCAACCTTTCCC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCATCTCACCAGCCTGGTCTTTTTCTTTATATTCAACCTTTCCC  650

seq1  TGCCTTGTCATCTCATCCATTTAGTGTGGCTGGTTGCCCTGAGTAGTTAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTCATCTCATCCATTTAGTGTGGCTGGTTGCCCTGAGTAGTTAC  700

seq1  AACCTCACAGCACAGTCTACATTAGTTTTGCCATATTCTGTCCAGCAGTC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCACAGCACAGTCTACATTAGTTTTGCCATATTCTGTCCAGCAGTC  750

seq1  ACTACTAATGTAGGAGTGAACTTAATCACGTTCAAGTGATTTACCTTGTG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAATGTAGGAGTGAACTTAATCACGTTCAAGTGATTTACCTTGTG  800

seq1  TGGCTTGACACTGACTTTTCTCCTCTTTTAGAGTGAGTAAGGCTCCAAGA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGACACTGACTTTTCTCCTCTTTTAGAGTGAGTAAGGCTCCAAGA  850

seq1  GTAAGTTTCTCGCTAAGAATTCAATACACAAATACAACCAGAAGGGACAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTTCTCGCTAAGAATTCAATACACAAATACAACCAGAAGGGACAA  900

seq1  GCAAACCACCTGATTCACAAATCACAAACTAGGAATAGAAGAAACATGAA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCACCTGATTCACAAATCACAAACTAGGAATAGAAGAAACATGAA  950

seq1  AAGATAGAATATTCTAACTCCTCAACTACTGAATTC  970
      ||||||||||||||||||||||||||||||||||||
seq2  AAGATAGAATATTCTAACTCCTCAACTACTGAATTC  986

seq1: chr11_4277833_4278975
seq2: B6Ng01-176D19.g_67_1198

seq1  GAATTCACACTGGATTCACAAGTGAGTAAATGAGAAGTTTGATGAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGGATTCACAAGTGAGTAAATGAGAAGTTTGATGAAGATA  50

seq1  ATGTAGAGTTCCAGAGGACTCTATACTGATTAGTTCTAAACGGTTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGTTCCAGAGGACTCTATACTGATTAGTTCTAAACGGTTAAAAA  100

seq1  AAAAGACTGACTTTATTATAGAGAAGCCTAACAGATACCACCCTATTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGACTTTATTATAGAGAAGCCTAACAGATACCACCCTATTCAA  150

seq1  ATCACCAAGGAAAAAGTTAACAATGGGACAAATCAAAATCATTTGCTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAAGGAAAAAGTTAACAATGGGACAAATCAAAATCATTTGCTACT  200

seq1  TAAAGTAGTCATTACTCAACACCACTCTGGAGTACTTAAACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAGTCATTACTCAACACCACTCTGGAGTACTTAAACACACACACA  250

seq1  CACCCTGAATTTAATCCTGAGGACACATGGGTCAGATGCATACGGGACGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGAATTTAATCCTGAGGACACATGGGTCAGATGCATACGGGACGA  300

seq1  TCAGGGAGACAGTTCTATTGAAACATGCCACAATCAGTGCAATCAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGACAGTTCTATTGAAACATGCCACAATCAGTGCAATCAAGGAA  350

seq1  AGACTTCCTAACTAAAGGAGGCTTAAGGAATGTAACAACTAAATAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCTAACTAAAGGAGGCTTAAGGAATGTAACAACTAAATAAGAAT  400

seq1  AAAGTCTTAAGGAATTCACAGATCTAAATCCAAGTATGAGATTAGGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTAAGGAATTCACAGATCTAAATCCAAGTATGAGATTAGGAGTC  450

seq1  TTTTAACATAAATCTGTCCTCAGCCTACTGGTCATGAATAGTTCTTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACATAAATCTGTCCTCAGCCTACTGGTCATGAATAGTTCTTACAT  500

seq1  CTTACCCATTTTGGCATAGCAATAAATATAACCTTGGCAATCATTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCATTTTGGCATAGCAATAAATATAACCTTGGCAATCATTTTGGT  550

seq1  AATTTTGCCAATTTTGCATAAGTCAATTAAGCTCTGTCTGACCTGGACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCCAATTTTGCATAAGTCAATTAAGCTCTGTCTGACCTGGACCC  600

seq1  TTCTGTAATAAGGAACAGTATTAGGAGAGCTGGGGAAACTGGGGTGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATAAGGAACAGTATTAGGAGAGCTGGGGAAACTGGGGTGGAGT  650

seq1  CTAAGGGCCACATTACAGTTATTCTACAAGTTTATCCTAGCACGGATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGCCACATTACAGTTATTCTACAAGTTTATCCTAGCACGGATGGT  700

seq1  TGTACTGTCACTATGGAGGTGAATGGTTTTATTTCTAGGAATTGCTTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTCACTATGGAGGTGAATGGTTTTATTTCTAGGAATTGCTTAAG  750

seq1  TTTTCTAGGATAATGAAGCAACTTGTTCAGGG-AAAAAAAAAATCTGATT  799
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTCTAGGATAATGAAGCAACTTGTTCAGGGAAAAAAAAAAATCTGATT  800

seq1  TGTGCTGAACCTGCAGATTTTTCTGCAAACCTGGCATTATTTCAAAATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAACCTGCAGATTTTTCTGCAAACCTGGCATTATTTCAAAATAA  850

seq1  AAGTAAACATATAAAAATGTTGATTTTTAGGAAAATATTTT-AAGGAAAA  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGTAAACATATAAAAATGTTGATTTTTAGGAAAATATTTTAAAGGAAAA  900

seq1  GGACTTAGCATTTTCTGCTATATACATATTTTAAATAAATATTTTGGGAG  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGACTTAGCATTTTCTGCTATATACATATTTTAAAT-AATATTTTGGGAG  949

seq1  GCACTAACTTGTCTCTAACCTACCTACGACTGCTCTGTGATGAGTAAGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAACTTGTCTCTAACCTACCTACGACTGCTCTGTGATGAGTAAGTG  999

seq1  AGGTGTCAAAAGCACTGTGCCAGGGACAGGAGATGAAAAAGAATGGG-AA  1047
      ||||||||||||||||||||||||||||||||||||||||||  ||| ||
seq2  AGGTGTCAAAAGCACTGTGCCAGGGACAGGAGATGAAAAAGATGGGGAAA  1049

seq1  GAAA-TCAG--AAGGATGTCAGGTCAC-AGTC-TGGGCT-GGAGCCT--A  1089
      |||| ||||  | ||||||||| |||| |||| |||||| |||||||  |
seq2  GAAATTCAGGAAGGGATGTCAGTTCACAAGTCTTGGGCTGGGAGCCTTAA  1099

seq1  TCAGGGACTCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTTCCTC  1139
      |||||||                  ||||||||||  |    ||||||||
seq2  TCAGGGA-----------------ACTCTTCCTCCATC----CCTTCCTC  1128

seq1  TTCT  1143
      ||||
seq2  TTCT  1132