BAC Information

Click to search

BAC

Clone NameB6Ng01-177C17
Chromosome11 (Build37)
Map Location 74,853,932 - 74,977,625
singlet/doubletdoublet
Overlap geneSmg6, LOC100043429, LOC627835
Upstream geneOlfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478
Downstream geneHic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177C17.bB6Ng01-177C17.g
ACCGA004516GA004517
length1,148453
definitionB6Ng01-177C17.b B6Ng01-177C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,853,932 - 74,855,066)(74,977,168 - 74,977,625)
sequence
gaattccaggtcactcctggctatatagagagggagtttgaggtcagact
ggactacatgataccctcaaaaacacaaaaatagggccagcaatatggct
tggtaggtcataaacacacacacacacacacacacacacacacacgcaca
cacacagagtaataataaaattcaaatggataatgtaaaacattatctag
actcccagctttttctagactcccaggtagttaatattttactatgtctt
taaacatgcacatgtacgcttattgtttttgttctgaaccattgatctta
ggctgaaagcatgatggccctttggctctaaatacttactttgtatttct
tcacactaaggatgaaatcttaacagtaccagaatctgggagctaaggat
gtattcagtggtagagtatttgcctagcatttacagacctaggttatatc
cttagcaaaacaataagcaaaaaagaacagttgccaaatcaggggttgga
gctagagcaatggctcagcggctaaaagcacatattactgtcaaagcaga
gaacataagttttggtcccagaactcacattcttcacagctgcctgtaac
tccagctccaggacatccaaatgtccttctggcttccagaggcacctgca
ttcatgtatggatgcccacatatagatatatgcaagtacacataattaaa
aataaaatcaatttaaaaaacaaaaatagaaaatcagtgctgatacagta
atatcattgaatatataggcgtaattcaatttgtacttatttccccgata
atgttctttgttgagaaagaggcatttaaagtcactctgtagcccagtct
gacttcaagctcaaaaattctcctggctcagcctcctgaatactagactc
aacaggcatatgctatcatgcccaactctgacaatattatttgggctgca
gggtcaaggggtggagtgttctaccctaggctctaatttaggatcacaca
ctgcatttagtcctctttagtcctccttcaacctattcctcctcttttgt
ccttcataacccttgacattattgaaaataccagccctttttatttttgt
agaaatattcccaccatttggttttctgatgttttcccttcttgatta
attcctggtcgggagcctccaagtgaggttgtaaacagaggcagcaaaaa
acaaaaacaaaaaacctaaaagaaccaaaaccctcaaaggctaaagggcc
ccatgtcccctcttctgggtaaagaagtacaatgacaaagccagaaacgg
gctcaacaccctggcacctctaccttggggttcagctctcccagctagga
gacttctcagaggtgtgacgggttgggaaggaaggacagctgggaaggct
ttatttggttcctgtcacaggtggtaggggtaagattcagaacgagaagt
cccacaaggaactgaggggaggaagtttagggggtttggggtgatgaaag
gggccaactagaaaaggaaggcagcaaagaagagtctgaggatatttccc
caagagggtactgcagtgaaatgaaggccaaggatgggagcatgtgctgg
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_74853932_74855066
seq2: B6Ng01-177C17.b_45_1192

seq1  GAATTCCAGGTCACTCCTGGCTATATAGAGAGGGAGTTTGAGGTCAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCACTCCTGGCTATATAGAGAGGGAGTTTGAGGTCAGACT  50

seq1  GGACTACATGATACCCTCAAAAACACAAAAATAGGGCCAGCAATATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACATGATACCCTCAAAAACACAAAAATAGGGCCAGCAATATGGCT  100

seq1  TGGTAGGTCATAAACACACACACACACACACACACACACACACACGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGTCATAAACACACACACACACACACACACACACACACACGCACA  150

seq1  CACACAGAGTAATAATAAAATTCAAATGGATAATGTAAAACATTATCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGTAATAATAAAATTCAAATGGATAATGTAAAACATTATCTAG  200

seq1  ACTCCCAGCTTTTTCTAGACTCCCAGGTAGTTAATATTTTACTATGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGCTTTTTCTAGACTCCCAGGTAGTTAATATTTTACTATGTCTT  250

seq1  TAAACATGCACATGTACGCTTATTGTTTTTGTTCTGAACCATTGATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGCACATGTACGCTTATTGTTTTTGTTCTGAACCATTGATCTTA  300

seq1  GGCTGAAAGCATGATGGCCCTTTGGCTCTAAATACTTACTTTGTATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAAGCATGATGGCCCTTTGGCTCTAAATACTTACTTTGTATTTCT  350

seq1  TCACACTAAGGATGAAATCTTAACAGTACCAGAATCTGGGAGCTAAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTAAGGATGAAATCTTAACAGTACCAGAATCTGGGAGCTAAGGAT  400

seq1  GTATTCAGTGGTAGAGTATTTGCCTAGCATTTACAGACCTAGGTTATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGTGGTAGAGTATTTGCCTAGCATTTACAGACCTAGGTTATATC  450

seq1  CTTAGCAAAACAATAAGCAAAAAAGAACAGTTGCCAAATCAGGGGTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAAAACAATAAGCAAAAAAGAACAGTTGCCAAATCAGGGGTTGGA  500

seq1  GCTAGAGCAATGGCTCAGCGGCTAAAAGCACATATTACTGTCAAAGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCAATGGCTCAGCGGCTAAAAGCACATATTACTGTCAAAGCAGA  550

seq1  GAACATAAGTTTTGGTCCCAGAACTCACATTCTTCACAGCTGCCTGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAGTTTTGGTCCCAGAACTCACATTCTTCACAGCTGCCTGTAAC  600

seq1  TCCAGCTCCAGGACATCCAAATGTCCTTCTGGCTTCCAGAGGCACCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCCAGGACATCCAAATGTCCTTCTGGCTTCCAGAGGCACCTGCA  650

seq1  TTCATGTATGGATGCCCACATATAGATATATGCAAGTACACATAATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTATGGATGCCCACATATAGATATATGCAAGTACACATAATTAAA  700

seq1  AATAAAATCAATTTAAAAAACAAAAATAGAAAATCAGTGCTGATACAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATCAATTTAAAAAACAAAAATAGAAAATCAGTGCTGATACAGTA  750

seq1  ATATCATTGAATATATAGGCGTAATTCAATTTGTACTTATTTCCCCGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTGAATATATAGGCGTAATTCAATTTGTACTTATTTCCCCGATA  800

seq1  ATGTTCTTTGTTGAGAAAGAGGCATTTAAAGTCACTCTGTAGCCCAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTGTTGAGAAAGAGGCATTTAAAGTCACTCTGTAGCCCAGTCT  850

seq1  GACTTCAAGCTCAAAAATTCTCCTGGCTCAGCCTCCTGAATACTAGACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAAGCTCAAAAATTCTCCTGGCTCAGCCTCCTGAATACTAGACTC  900

seq1  AACAGGCATATGCTATCATGCCCAACTCTGACAATATTATTTGGGCTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCATATGCTATCATGCCCAACTCTGACAATATTATTTGGGCTGCA  950

seq1  GGGTCAAGGGGTGGAGTGTTCTACCCTAGGCTCTAATTTAGGATCACACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAGGGGTGGAGTGTTCTACCCTAGGCTCTAATTTAGGATCACACA  1000

seq1  CTGCATTTAAGTCTCTTTAGT-CTCCTTCAACCTATCTCTC----TTTGT  1045
      |||||||||   ||||||||| ||||||||||||||  |||    |||||
seq2  CTGCATTTAGTCCTCTTTAGTCCTCCTTCAACCTATTCCTCCTCTTTTGT  1050

seq1  CCTTCATAA-CCTTGACATTATTG-AAATACAAGCC--TTTTA-TTTTGT  1090
      ||||||||| |||||||||||||| |||||| ||||  ||||| ||||||
seq2  CCTTCATAACCCTTGACATTATTGAAAATACCAGCCCTTTTTATTTTTGT  1100

seq1  AG-AATATT-CCACCATTTGGGTTTTTCTGATGTTT--CCTTC-TGATTA  1135
      || |||||| |||||||||||  |||||||||||||  ||||| ||||||
seq2  AGAAATATTCCCACCATTTGG--TTTTCTGATGTTTTCCCTTCTTGATTA  1148

seq1: chr11_74977168_74977625
seq2: B6Ng01-177C17.g_65_522 (reverse)

seq1  CACCAGCACATGCTCCCATCCTTGGCCTTCCTTTCACTGCAGTACCCTCT  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACCAGCACATGCTCCCATCCTTGGCCTTCATTTCACTGCAGTACCCTCT  50

seq1  TGGGGAAATTTCCTCAGACTCTTCTTTGCTGCCTTCCTTTTCTAGTTGGC  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAATATCCTCAGACTCTTCTTTGCTGCCTTCCTTTTCTAGTTGGC  100

seq1  CCCTTTCATCACCCCAAACCCCCTAAACTTCCTCCCCTCAGTTCCTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCATCACCCCAAACCCCCTAAACTTCCTCCCCTCAGTTCCTTGTG  150

seq1  GGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCTCGTTCTGAATCTTACCCCTACCACCTGTGACAGGAACCAAAT  200

seq1  AAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTCCCAGCTGTCCTTCCTTCCCAACCCGTCACACCTCTGAGAAG  250

seq1  TCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGGTGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGCTGGGAGAGCTGAACCCCAAGGTAGAGGTGCCAGGGTGTTGA  300

seq1  GCCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTTTCTGGCTTTGTCATTGTACTTCTTTACCCAGAAGAGGGGACAT  350

seq1  GGGGCCCTTTAGCCTTTGAGGGTTTTGGTTCTTTTAGGTTTTTTGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCCTTTAGCCTTTGAGGGTTTTGGTTCTTTTAGGTTTTTTGTTTTT  400

seq1  GTTTTTTGCTGCCTCTGTTTACAACCTCACTTGGAGGCTCCCGACCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGCTGCCTCTGTTTACAACCTCACTTGGAGGCTCCCGACCAGGA  450

seq1  ATGAATTC  458
      ||||||||
seq2  ATGAATTC  458