BAC Information

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BAC

Clone NameB6Ng01-179L16
Chromosome11 (Build37)
Map Location 58,438,048 - 58,439,048
singlet/doubletsinglet
Overlap geneOlfr323
Upstream geneGalnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik
Downstream geneTrim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179L16.bB6Ng01-179L16.g
ACCGA006369GA006370
length1,0011,013
definitionB6Ng01-179L16.b B6Ng01-179L16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatacagaagggcggagaaacacctgtaaaaaat
gttcaacatctgtactggttagttttgtgtcaacttgacacagctggagt
tatagagaaaggagcttcagttgaggaaatgcctccatgagatccaactg
taaggcattttctcaattagagatcaagggggaaaggccccttgtgggtc
ggaccatctctgggctggtaatcttggattctataagagagcaggttgaa
caagccaggagaagcaagccagtaatgaacatccctccatgacctctgca
tcagctcctgctttctgacctgcttgagttccagtcctgacttccttggt
gatgaacagcagtatggaagtgtaagctgaataaaccctttcctccccaa
cttgcttcttggtcataatgtttgtgcaggaatagaaaccctaactaaga
caaattggtaccagaagtggggtattcctgtgacactctgatcatgtttt
ggggaggactttggaagaactttggaactttgggccagaagatccattct
gtgttaagagctctgttgaatgttgtgtaggagcttcgaatataatgttg
agaacagtgcagaagatggaggcctggcttatgaaatttctgagggaaga
ttaaagacttttctcagggccattgatagttttgattgtgaagatttctg
tggttctggttagctggggctgaagaatcagctgtgattaacaagatacc
agaactactaaagcaaaaactttgcattactgggactattgattgctggt
tagttgggatctaaggaattagcgatgattaaagaagagatcagcatcat
tgagatgacatctttctgggaagtgttttctgaagcacagaggcttgtgt
ttccagagatagccaaggttgtaaacttggtgttgtggctggaacttggt
taatgtgtagaagttaccccaggtatgtactgtgttttagaaaggcatga
a
gaattcaaggccagcctggtctacagaggaggcttcaggacagtcagggt
tacacagataaccctgtctcaaacagaacaaaacacacaaatgaagaaga
agagggagaggagatagaaaaaggggaaacagaggaggaaaggaaggaaa
gcaagcaaggaaggaaacaagcaaattggacaataagtgaagcctcgaat
cccaagacggaaagatctctggatccccttttcctccctgtctcttttgt
ttgtttgtttcttttttagaaagtccataattaaaccaccttaaaattcc
aggttataagagaagaaatgcttggcaccgcagacgcttttacttattcg
ttcttaccgcgagggcacttcagacttatctttttccattcattctttgt
acggctattggataacatcaaactctgggtctaaaaggccagcttagcag
tgctttagaggaacttctgtgcccaagttcaaactaaaccagatcctagt
gcttgaggcactgtgtgtgcagggtccctacgtagtgagggcacttcctt
tcactctggctctgtagaccccacacttggttctcacgatttttctcaca
gcttctttgaagtctttgtttcctcaggctgtagataactggggttcagc
agtggagtgaccacggtgtagaagacagaaatgaccttgttgagttccgg
tgacagatgtgcatttgggcgcacatacatggagatcatggtcccgtagt
agatggtgaccacagccaggtgggaaccacatgtagaaaacgtcttcatc
ctgccggaagtggaggggattctcagaatggaggacactatgaaaacgta
ggacaccagggttaggaggaaacagatacatagcacagcgatgggacagg
acaaagattgtccattttctgtcacttagacactgggagcaggacagctg
gattaacggagggaaggtcacagaaggatatgtgttgatgcctgtttggg
tcccacagaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58438048_58439048
seq2: B6Ng01-179L16.g_71_1083

seq1  GAATTCAAGGCCAGCCTGGTCTACAGAGGAGGCTTCAGGACAGTCAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACAGAGGAGGCTTCAGGACAGTCAGGGT  50

seq1  TACACAGATAACCCTGTCTCAAACAGAACAAAACACACAAATGAAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGATAACCCTGTCTCAAACAGAACAAAACACACAAATGAAGAAGA  100

seq1  AGAGGGAGAGGAGATAGAAAAAGGGGAAACAGAGGAGGAAAGGAAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGAGGAGATAGAAAAAGGGGAAACAGAGGAGGAAAGGAAGGAAA  150

seq1  GCAAGCAAGGAAGGAAACAAGCAAATTGGACAATAAGTGAAGCCTCGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAGGAAGGAAACAAGCAAATTGGACAATAAGTGAAGCCTCGAAT  200

seq1  CCCAAGACGGAAAGATCTCTGGATCCCCTTTTCCTCCCTGTCTCTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACGGAAAGATCTCTGGATCCCCTTTTCCTCCCTGTCTCTTTTGT  250

seq1  TTGTTTGTTTCTTTTTTAGAAAGTCCATAATTAAACCACCTTAAAATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTCTTTTTTAGAAAGTCCATAATTAAACCACCTTAAAATTCC  300

seq1  AGGTTATAAGAGAAGAAATGCTTGGCACCGCAGACGCTTTTACTTATTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATAAGAGAAGAAATGCTTGGCACCGCAGACGCTTTTACTTATTCG  350

seq1  TTCTTACCGCGAGGGCACTTCAGACTTATCTTTTTCCATTCATTCTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCGCGAGGGCACTTCAGACTTATCTTTTTCCATTCATTCTTTGT  400

seq1  ACGGCTATTGGATAACATCAAACTCTGGGTCTAAAAGGCCAGCTTAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTATTGGATAACATCAAACTCTGGGTCTAAAAGGCCAGCTTAGCAG  450

seq1  TGCTTTAGAGGAACTTCTGTGCCCAAGTTCAAACTAAACCAGATCCTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGAGGAACTTCTGTGCCCAAGTTCAAACTAAACCAGATCCTAGT  500

seq1  GCTTGAGGCACTGTGTGTGCAGGGTCCCTACGTAGTGAGGGCACTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGGCACTGTGTGTGCAGGGTCCCTACGTAGTGAGGGCACTTCCTT  550

seq1  TCACTCTGGCTCTGTAGACCCCACACTTGGTTCTCACGATTTTTCTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGGCTCTGTAGACCCCACACTTGGTTCTCACGATTTTTCTCACA  600

seq1  GCTTCTTTGAAGTCTTTG-TTCCTCAGGCTGTAGATAACT-GGGTTCAGC  648
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  GCTTCTTTGAAGTCTTTGTTTCCTCAGGCTGTAGATAACTGGGGTTCAGC  650

seq1  AGTGGAGTGACCACGGTGTAGAAGACAGAAATGACCTTGTTGAGTTCCGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTGACCACGGTGTAGAAGACAGAAATGACCTTGTTGAGTTCCGG  700

seq1  TGACAGATGTGCATTTGGGCGCACATACATGGAGATCATGGTCCCGTAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATGTGCATTTGGGCGCACATACATGGAGATCATGGTCCCGTAGT  750

seq1  AGATGGTGACCACAGCCAGGTGGGAACCACATGTAGAAAACGTCTTCATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGACCACAGCCAGGTGGGAACCACATGTAGAAAACGTCTTCATC  800

seq1  CTGCCGGAAGTGGAGGGGATTCTCAGAATGGAGGACACTATGAAAACGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGGAAGTGGAGGGGATTCTCAGAATGGAGGACACTATGAAAACGTA  850

seq1  GGACACCAGGGTTAGGAGGAAACAGATACATAGCACAGCGAT-GGACAGG  897
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGACACCAGGGTTAGGAGGAAACAGATACATAGCACAGCGATGGGACAGG  900

seq1  ACAAAGA-TGGCCA-TTTCTGTCACATAGACACT-GGAGCAGGACAGCTG  944
      ||||||| || ||| |||||||||| |||||||| |||||||||||||||
seq2  ACAAAGATTGTCCATTTTCTGTCACTTAGACACTGGGAGCAGGACAGCTG  950

seq1  GATTAACGGAGGG-AGGTCACAGAA-GAAATG-GTTGATGC--GGTTGGG  989
      ||||||||||||| ||||||||||| || ||| ||||||||  | |||||
seq2  GATTAACGGAGGGAAGGTCACAGAAGGATATGTGTTGATGCCTGTTTGGG  1000

seq1  -CCCACAGAAGTC  1001
       ||||||||||||
seq2  TCCCACAGAAGTC  1013