BAC Information

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BAC

Clone NameB6Ng01-180C07
Chromosome11 (Build37)
Map Location 53,644,686 - 53,781,556
singlet/doubletdoublet
Overlap geneLOC622459, Slc22a5, LOC667762, Slc22a21
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731, Rad50, Il5, Irf1
Downstream geneSlc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180C07.bB6Ng01-180C07.g
ACCGA006661GA006662
length6401,149
definitionB6Ng01-180C07.b B6Ng01-180C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,644,686 - 53,645,324)(53,780,400 - 53,781,556)
sequence
gaattctagaacagagggtctcaacctgtgggtcatattagacatcctgc
ttatcagatgtttgtattatacttcacaacagtagcaaaattactgtcat
gaagtagcaatgacataattttatggttggggtcaccacaccaggaggaa
ctgaattaaagggttgcagcattaggatggttgagaaccagtgctctaga
agaggctcaatgcttccttgggtggtaggtaggtgagtacagaggcaggc
tgggaggaggtgggaagatgaggttatgtgctaagtgtgctcacctccag
gatgctcagtataggaaaggcagtgtgaacagaggggtgctgatctctat
gaacaaaaggatgctggcttctgtgaacaagggagatcctggctttgtga
acaagggggatgctggctctgtgagcaaaggggatgctggtttctgtgag
caagagggatgctggctctgtgaacaagggggatgctggcttctatgtca
gaatttaggagagtagtaggggttagaaacttagccatcaacaggctaag
aatagctgggttagaacttaggaggcagaggcaggtgaatatctgagttg
gaagccagcctgtactaaagagcaagttccaggacagccc
gaattcatgatcttacacagcaagcactttacctgctagaccatcttgac
gacccttgttttttgtgagtgctttttttctttctcagtacaaggtcttt
ccgtagctgacctagtacttgctatgtaagccaggctgacattaaacgta
tggcagtcctcctggatgacattcctgatgccagaagtatttacaaggat
ttaccatcactctcagctagtgaaaactaacataactgcgtatctcatta
gattcatttttaaaagtcacttagtgattaaaaacaaaaatattgacctg
ccaccaaggtgcactaaagatgtcagtgggatgtcaggtctagtggcaca
ctgctttagtaccggcactcaggaagcagaggcaggtggttctctgagtt
tgaaaacagcctggtatatacagtgagttctagaacagccagagctacac
agcaaaacgctgtttaaaaataaataaataaccggactagcgcatgctga
ctgtaggggtcagaggtcaggtcgagtgtctcccaggcctacgaggaaga
tggcagtggaatcacgcgttacccagaggaaattaagaaggagccagaga
aggcgatccgagagaagacctgcccgctcctgctccggtcttaaccaaca
actgcagccaccaccgaatggacgggttctcctgtgggaacgtgcctttg
agcgagccgcagatctacgcctggatggatgcaaccttgaaagaactgac
tagtttagtgaaggaagtctacccagaagccagaaaagaagggcacccac
ttcaattttgcaattgtttttatggatctttaaaagacctggatcgagtt
aaggagactagcagcaccatgtctcgaaggaaaggcactgatgactccat
gaccctgcagtcacagaaagttccaaataggggattatctgggccatagc
catcatgcctccaaattgggcaccacctttcgtcaggaggatggagacgt
tataaattctattgactttcttgaagttatttttcagccagtttgttaaa
ataacttactatcctttcttccccccccccacggggtggtggtgacccta
gacagtttaaaaaatagatgtagtaagcgtgaactatagaaatgctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53644686_53645324
seq2: B6Ng01-180C07.b_41_679

seq1  GAATTCTAGAACAGAGGGTCTCAACCTGTGGGTCATATTAGACATCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAACAGAGGGTCTCAACCTGTGGGTCATATTAGACATCCTGC  50

seq1  TTATCAGATGTTTGTATTATACTTCACAACAGTAGCAAAATTACTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGATGTTTGTATTATACTTCACAACAGTAGCAAAATTACTGTCAT  100

seq1  GAAGTAGCAATGACATAATTTTATGGTTGGGGTCACCACACCAGGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCAATGACATAATTTTATGGTTGGGGTCACCACACCAGGAGGAA  150

seq1  CTGAATTAAAGGGTTGCAGCATTAGGATGGTTGAGAACCAGTGCTCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTAAAGGGTTGCAGCATTAGGATGGTTGAGAACCAGTGCTCTAGA  200

seq1  AGAGGCTCAATGCTTCCTTGGGTGGTAGGTAGGTGAGTACAGAGGCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCAATGCTTCCTTGGGTGGTAGGTAGGTGAGTACAGAGGCAGGC  250

seq1  TGGGAGGAGGTGGGAAGATGAGGTTATGTGCTAAGTGTGCTCACCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAGGTGGGAAGATGAGGTTATGTGCTAAGTGTGCTCACCTCCAG  300

seq1  GATGCTCAGTATAGGAAAGGCAGTGTGAACAGAGGGGTGCTGATCTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAGTATAGGAAAGGCAGTGTGAACAGAGGGGTGCTGATCTCTAT  350

seq1  GAACAAAAGGATGCTGGCTTCTGTGAACAAGGGAGATCCTGGCTTTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAAGGATGCTGGCTTCTGTGAACAAGGGAGATCCTGGCTTTGTGA  400

seq1  ACAAGGGGGATGCTGGCTCTGTGAGCAAAGGGGATGCTGGTTTCTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGGGATGCTGGCTCTGTGAGCAAAGGGGATGCTGGTTTCTGTGAG  450

seq1  CAAGAGGGATGCTGGCTCTGTGAACAAGGGGGATGCTGGCTTCTATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGGATGCTGGCTCTGTGAACAAGGGGGATGCTGGCTTCTATGTCA  500

seq1  GAATTTAGGAGAGTAGTAGGGGTTAGAAACTTAGCCATCAACAGGCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAGGAGAGTAGTAGGGGTTAGAAACTTAGCCATCAACAGGCTAAG  550

seq1  AATAGCTGGGTTAGAACTTAGGAGGCAGAGGCAGGTGAATATCTGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGGGTTAGAACTTAGGAGGCAGAGGCAGGTGAATATCTGAGTTG  600

seq1  GAAGCCAGCCTGGACTAAAGAGCAAGTTCCAGGACAGCC  639
      |||||||||||| ||||||||||||||||||||||||||
seq2  GAAGCCAGCCTGTACTAAAGAGCAAGTTCCAGGACAGCC  639

seq1: chr11_53780400_53781556
seq2: B6Ng01-180C07.g_65_1213 (reverse)

seq1  CTCAGCAATCTTATAG-TCACAGCTTACTTACATCTTTATTTTTTTAAAA  49
      ||||||| |  ||||| |||| |||||| ||||||  ||||||||  |||
seq2  CTCAGCATTTCTATAGTTCAC-GCTTAC-TACATC--TATTTTTT--AAA  44

seq1  ATGTCTAGGGTTCCACCACCACCCCCGTGGGGGGGGGGGGAAAGAAAGGA  99
       ||||||||||  |||||||| ||||||||||||||||   |||||||||
seq2  CTGTCTAGGGT--CACCACCA-CCCCGTGGGGGGGGGG---AAGAAAGGA  88

seq1  TTAAGTAAGTTTATTTTACAAACTGGCTGAAAAATAACTTCAAGAAAGTC  149
      |  ||||||||  ||| |||||||||||||||||||||||||||||||||
seq2  T--AGTAAGTTATTTTAACAAACTGGCTGAAAAATAACTTCAAGAAAGTC  136

seq1  AATAGAATTTATTACGTCT-CATCCTCCCTGACG-AAGGTGGTGCCCAAT  197
      |||||||||||| |||||| |||||| ||||||| |||||||||||||||
seq2  AATAGAATTTATAACGTCTCCATCCT-CCTGACGAAAGGTGGTGCCCAAT  185

seq1  TTGGAGGCATGATGGCTAT-GCCCAGATAATCCCCTATTTGGAAC-TTCT  245
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  TTGGAGGCATGATGGCTATGGCCCAGATAATCCCCTATTTGGAACTTTCT  235

seq1  GTGACTGCAGGGTCATGGAGTCATCAGTGCCTTTCCTTCGAGACATGGTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGCAGGGTCATGGAGTCATCAGTGCCTTTCCTTCGAGACATGGTG  285

seq1  CTGCTAGTCTCCTTAACTCGATCCAGGTCTTTT-AAGATCCATAAAAACA  344
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGCTAGTCTCCTTAACTCGATCCAGGTCTTTTAAAGATCCATAAAAACA  335

seq1  ATTGCAAAATTGAAGTGGGTGCCCTTC-TTTCTGGCTTCTGGGTAGACTT  393
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATTGCAAAATTGAAGTGGGTGCCCTTCTTTTCTGGCTTCTGGGTAGACTT  385

seq1  CCTTCACTAAACTAGTCAGTTCTTTCAAGGTTGCATCCATCCAGGCGTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTAAACTAGTCAGTTCTTTCAAGGTTGCATCCATCCAGGCGTAG  435

seq1  ATCTGCGGCTCGCTCAAAGGCACGTTCCCACAGGAGAACCCGTCCATTCG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCGGCTCGCTCAAAGGCACGTTCCCACAGGAGAACCCGTCCATTCG  485

seq1  GTGGTGGCTGCAGTTGTTGGTTAAGACCGGAGCAGGAGCGGGCAGGTCTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCTGCAGTTGTTGGTTAAGACCGGAGCAGGAGCGGGCAGGTCTT  535

seq1  CTCTCGGATCGCCTTCTCTGGCTCCTTCTTAATTTCCTCTGGGTAACGCG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGATCGCCTTCTCTGGCTCCTTCTTAATTTCCTCTGGGTAACGCG  585

seq1  TGATTCCACTGCCATCTTCCTCGTAGGCCTGGGAGACACTCGACCTGACC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCACTGCCATCTTCCTCGTAGGCCTGGGAGACACTCGACCTGACC  635

seq1  TCTGACCCCTACAGTCAGCATGCGCTAGTCCGGTTATTTATTTATTTTTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCCCTACAGTCAGCATGCGCTAGTCCGGTTATTTATTTATTTTTA  685

seq1  AACAGCGTTTTGCTGTGTAGCTCTGGCTGTTCTAGAACTCACTGTATATA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCGTTTTGCTGTGTAGCTCTGGCTGTTCTAGAACTCACTGTATATA  735

seq1  CCAGGCTGTTTTCAAACTCAGAGAACCACCTGCCTCTGCTTCCTGAGTGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGTTTTCAAACTCAGAGAACCACCTGCCTCTGCTTCCTGAGTGC  785

seq1  CGGTACTAAAGCAGTGTGCCACTAGACCTGACATCCCACTGACATCTTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACTAAAGCAGTGTGCCACTAGACCTGACATCCCACTGACATCTTTA  835

seq1  GTGCACCTTGGTGGCAGGTCAATATTTTTGTTTTTAATCACTAAGTGACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCTTGGTGGCAGGTCAATATTTTTGTTTTTAATCACTAAGTGACT  885

seq1  TTTAAAAATGAATCTAATGAGATACGCAGTTATGTTAGTTTTCACTAGCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATGAATCTAATGAGATACGCAGTTATGTTAGTTTTCACTAGCT  935

seq1  GAGAGTGATGGTAAATCCTTGTAAATACTTCTGGCATCAGGAATGTCATC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGATGGTAAATCCTTGTAAATACTTCTGGCATCAGGAATGTCATC  985

seq1  CAGGAGGACTGCCATACGTTTAATGTCAGCCTGGCTTACATAGCAAGTAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGACTGCCATACGTTTAATGTCAGCCTGGCTTACATAGCAAGTAC  1035

seq1  TAGGTCAGCTACGGAAAGACCTTGTACTGAGAAAGAAAAAAAGCACTCAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGCTACGGAAAGACCTTGTACTGAGAAAGAAAAAAAGCACTCAC  1085

seq1  AAAAAACAAGGGTCGTCAAGATGGTCTAGCAGGTAAAGTGCTTGCTGTGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAGGGTCGTCAAGATGGTCTAGCAGGTAAAGTGCTTGCTGTGT  1135

seq1  AAGATCATGAATTC  1157
      ||||||||||||||
seq2  AAGATCATGAATTC  1149