BAC Information

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BAC

Clone NameB6Ng01-180E17
Chromosome11 (Build37)
Map Location 99,518,129 - 99,519,170
singlet/doubletsinglet
Overlap genenone
Upstream geneGsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511
Downstream geneLOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180E17.bB6Ng01-180E17.g
ACCGA006772GA006773
length1,045893
definitionB6Ng01-180E17.b B6Ng01-180E17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaacaaagcaatctctaatgtttgagaagcatttagagaaatg
ttaaatccttagtcaccagagaagtgcaaatcaaaacaatactggctgga
gttttaatgataggtacaaattctttttgttggctctttttgtttaattt
ttattctttgacagtttcatttctgcgtgttttcgtgttttttaaattta
aaaaaattttaatttgtctttttgttttacacttcatattccatttctcg
ttccctcccccatccactctcccactgctccacatcccacacctcctccc
caccctacctcggctccacatggatgccccacccccaccctacctgacct
ctaaacgccctggggactattccctgtcatccattctcatctcctcccag
actcagagctccctcctgactagcccactcccttctttctttcatgcctt
tgtccatgggtgggtgtgacctactgagtgtaagcagggctgccagcatg
agcgtggctaggaggtgatttcttggaacactggcagcttctcagtgcct
gtgctcctgaagaaaataggcatctctcaggcctcatcaaagaagtttct
ctttgcagttgacatgagcagttaatgccgactcaaaactatcaaagtgg
aggatacggcactgcagagaatttagggcatcttatcacatatgcatgtg
tggaggcacgctcacacgcttacacacacacacacacacacacacacaca
cacacacgcactcatgcacactcgcacgcatgcgtgcatgcacactgctc
agggagcatcacagagaagagaatggaaagactacgagtcagtgtcttct
gcgtgatgacagcgtggtgtgctcatgaactcactgtgactgactagtta
cttcctgtttgcaatttttttttaaactcaaccgtgttggaaattttccg
aaggttgtgatagcaggatcaggaaagtttggtgtagttatgcttgggta
tattaattttccttaagtcaaattcaataataggtctaaagaaca
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggcattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccat
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattaccgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttccttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcggtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctacctcagtgaaa
ttcttaggagtccagtggtgtgggggcatgcagagatattccttctaggt
gaaagataagttattgcacctggcccctcctacaaccaagaacgaagcac
aacgtttagtgggtctatttggattctggaagacacacatcccttcactt
gggtgtggtcacttaggcctatttaccaagtgactcggaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99518129_99519170
seq2: B6Ng01-180E17.b_40_1084

seq1  GAATTCTCAACAAAGCAATCTCTAATGTTTGAGAAGCATTTAGAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACAAAGCAATCTCTAATGTTTGAGAAGCATTTAGAGAAATG  50

seq1  TTAAATCCTTAGTCACCAGAGAAGTGCAAATCAAAACAATACTGGCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCTTAGTCACCAGAGAAGTGCAAATCAAAACAATACTGGCTGGA  100

seq1  GTTTTAATGATAGGTACAAATTCTTTTTGTTGGCTCTTTTTGTTTAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATGATAGGTACAAATTCTTTTTGTTGGCTCTTTTTGTTTAATTT  150

seq1  TTATTCTTTGACAGTTTCATTTCTGCGTGTTTTCGTGTTTTTTAAATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTGACAGTTTCATTTCTGCGTGTTTTCGTGTTTTTTAAATTTA  200

seq1  AAAAAATTTTAATTTGTCTTTTTGTTTTACACTTCATATTCCATTTCTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTTTAATTTGTCTTTTTGTTTTACACTTCATATTCCATTTCTCG  250

seq1  TTCCCTCCCCCATCCACTCTCCCACTGCTCCACATCCCACACCTCCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCCCATCCACTCTCCCACTGCTCCACATCCCACACCTCCTCCC  300

seq1  CACCCTACCTCGGCTCCACATGGATGCCCCACCCCCACCCTACCTGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTACCTCGGCTCCACATGGATGCCCCACCCCCACCCTACCTGACCT  350

seq1  CTAAACGCCCTGGGGACTATTCCCTGTCATCCATTCTCATCTCCTCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACGCCCTGGGGACTATTCCCTGTCATCCATTCTCATCTCCTCCCAG  400

seq1  ACTCAGAGCTCCCTCCTGACTAGCCCACTCCCTTCTTTCTTTCATGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGCTCCCTCCTGACTAGCCCACTCCCTTCTTTCTTTCATGCCTT  450

seq1  TGTCCATGGGTGGGTGTGACCTACTGAGTGTAAGCAGGGCTGCCAGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGGGTGGGTGTGACCTACTGAGTGTAAGCAGGGCTGCCAGCATG  500

seq1  AGCGTGGCTAGGAGGTGATTTCTTGGAACACTGGCAGCTTCTCAGTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGGCTAGGAGGTGATTTCTTGGAACACTGGCAGCTTCTCAGTGCCT  550

seq1  GTGCTCCTGAAGAAAATAGGCATCTCTCAGGCCTCATCAAAGAAGTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTGAAGAAAATAGGCATCTCTCAGGCCTCATCAAAGAAGTTTCT  600

seq1  CTTTGCAGTTGACATGAGCAGTTAATGCCGACTCAAAACTATCAAAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGTTGACATGAGCAGTTAATGCCGACTCAAAACTATCAAAGTGG  650

seq1  AGGATACGGCACTGCAGAGAATTTAGGGCATCTTATCACATATGCATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACGGCACTGCAGAGAATTTAGGGCATCTTATCACATATGCATGTG  700

seq1  TGGAGGCACGCTCACACGCTTACACACACACACACACACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCACGCTCACACGCTTACACACACACACACACACACACACACACA  750

seq1  CACACACGCACTCATGCACACTCGCACGCATGCGTGCATGCACACTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGCACTCATGCACACTCGCACGCATGCGTGCATGCACACTGCTC  800

seq1  AGGGAGCATCACAGAGAAGAGAATGGAAAGACTACGAGTCAGTGTCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCATCACAGAGAAGAGAATGGAAAGACTACGAGTCAGTGTCTTCT  850

seq1  GCGTGATGACAGCGTGGTGTGCTCATGAACTCACTGTGACTGACTAGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGATGACAGCGTGGTGTGCTCATGAACTCACTGTGACTGACTAGTTA  900

seq1  CTTCCTGTTTGCAATTTTTTTTTTAAACTC-ACCGTGTTGGAAATTTTCC  949
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  CTTCCTGTTTGCAA-TTTTTTTTTAAACTCAACCGTGTTGGAAATTTTCC  949

seq1  GAA-GTTGTGATAGCAGGATCAGGAAAGTTTGGTGTAGTTATGCTT-GGT  997
      ||| |||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAGGTTGTGATAGCAGGATCAGGAAAGTTTGGTGTAGTTATGCTTGGGT  999

seq1  ATA-TAATTTTCCTT-AGTCAAATTCAATAATAGTTCTAAAGCAACA  1042
      ||| ||||||||||| |||||||||||||||||| ||||||| ||||
seq2  ATATTAATTTTCCTTAAGTCAAATTCAATAATAGGTCTAAAG-AACA  1045