BAC Information

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BAC

Clone NameB6Ng01-181C17
Chromosome11 (Build37)
Map Location 64,019,886 - 64,021,028
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik
Downstream geneEG544785, Hs3st3a1, LOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181C17.bB6Ng01-181C17.g
ACCGA007405GA007406
length1,1391,221
definitionB6Ng01-181C17.b B6Ng01-181C17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatccaagagatatttcacttaataggcagccaactcaaactag
ataatgaggaaaaattttgggctattcatgtcattgactttagcttgtat
ttatttagtctctatagtattgtacagactcctgtgtatgagtgtgtcat
agacttcaaacaggccgttcttaaataagctttgtctccatgctacctcc
taccctaacttgtaagtccacatattctctaacccaatcttctgaactat
gaaattttccaaaataggctatatatcttttgtttctttccaaattcttt
acagatgtcatttacttttctggatgcatgtccctgcccatccttaatgc
tgaattttttactccctcctgtaaccagggagcactgtcccccccacacc
ccccccgaattttatatagcctaaggctgtagagatgaactcagagaacc
ctcagatggcagtaactgcagtctttagaagcttaatgttactccatttg
atctgaagctgtgtaataggccttgaatcccttctatcaggaagcagtgg
ttatcgttatcatttcagaaaaacatactgtatgcattttaatgaaagaa
acagaaaatccccaaaaggatgccatgtgcccaatgtgatggggtgcacc
tgtaatctcagcactcagaaacagaaagcaggaagacagtgagttccaga
gcagcctggcgctacatcctgagactgtctgatgttccgagtaccagaac
aattatttgatcttagatgagtctggcactctaagtttaaaatctttccc
ttttacagttattgtatttccatcctaacactctctgaggagagtgatgg
aatagttttacatgcatattctatggaatgactaggataagtgaatagta
gctttgctcttgggtctggactttgccctgaaagctgggccttttggtgt
tccaggggagtcaaagggagggtgcataaccctgaaaccagagggcttcc
tcacttttctgtgcagtattggcttctcctagacacgaaagcctcattag
cactctggatggtgatcttcttgctgttctatcttctgcttccctcccag
ccctctgggaattcccttctggggtgcaatgatatagca
gaattcttagttcttccagcaccatgtctgcctgaatgataatggactaa
acctctgactctgttagccagctccaattaaatgtccttataaaagttgc
cttggtcatagtatctcttcacagcagtgagaacccaaactaagacaaca
gtccattgagggaagccaagatagaaactcaaatagggcagaaaactgga
ggcttgagctgatacagaggccagagaaaagtgcagtttaccagctttcg
ctcaatggcttgttcagcctgctttctttcatttttttttcctgagacag
ggtttctctgtatagccctggctgtcctggagctcactctgtagaccagg
ctggactcaaatgcagaaatctgcctgcctctgcctcccaagtgctggga
ttaaaggcatgtgccaccactgcccagcttcagcctgctttcttatatca
tctacacccaccagtccagggatagcactgggccctcccaaatcaatcat
tcactgagaaagtgccccacaggcttgcctacaacccaatcatatgaagg
catttttctcacatgacttcaccttatgccgagttgacataaaatcagcc
agcactcctctcaaaggctcgggtgataatgtcctgatgctattgggact
tttgggtactttaggaggtgggattatatgaaaggaagtttagtcaatgg
gagaatggccttaagaggactgtaagaaccctaccctcttcgtttctggc
ttcattccaaggataatctgttctacaatacactccctgccttgacatgg
gtttgtagtgacaagtccaaaccaccaaagccctctgaaatagctagccc
tccttatcccagttgaatcttgggtgctttgtctcagtgatgagaaggga
ttaaaatgctccttacctcccaaattctttcagagatactcatctctaga
agatcaactaaagattggaattaactgtgtccatttaacagatgaaacag
agcatgaatggaacgcaaatggaaaaaaataataggactgtcccagtttc
ccagaagaagacaataaaatgcctatgaaaatggacgaacaaaacagcct
ggatgtggtgtgtcaggccttcaggaaacggtcctcatttacacctagtt
cagtcttatagaatcctctcctcgatttctaactgatagtagaagacaca
acgtcaccactcctatgtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_64019886_64021028
seq2: B6Ng01-181C17.b_42_1180

seq1  GAATTCCATCCAAGAGATATTTCACTTAATAGGCAGCCAACTCAAACTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCAAGAGATATTTCACTTAATAGGCAGCCAACTCAAACTAG  50

seq1  ATAATGAGGAAAAATTTTGGGCTATTCATGTCATTGACTTTAGCTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGGAAAAATTTTGGGCTATTCATGTCATTGACTTTAGCTTGTAT  100

seq1  TTATTTAGTCTCTATAGTATTGTACAGACTCCTGTGTATGAGTGTGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGTCTCTATAGTATTGTACAGACTCCTGTGTATGAGTGTGTCAT  150

seq1  AGACTTCAAACAGGCCGTTCTTAAATAAGCTTTGTCTCCATGCTACCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAAACAGGCCGTTCTTAAATAAGCTTTGTCTCCATGCTACCTCC  200

seq1  TACCCTAACTTGTAAGTCCACATATTCTCTAACCCAATCTTCTGAACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAACTTGTAAGTCCACATATTCTCTAACCCAATCTTCTGAACTAT  250

seq1  GAAATTTTCCAAAATAGGCTATATATCTTTTGTTTCTTTCCAAATTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTCCAAAATAGGCTATATATCTTTTGTTTCTTTCCAAATTCTTT  300

seq1  ACAGATGTCATTTACTTTTCTGGATGCATGTCCCTGCCCATCCTTAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTCATTTACTTTTCTGGATGCATGTCCCTGCCCATCCTTAATGC  350

seq1  TGAATTTTTTACTCCCTCCTGTAACCAGGGAGCACTGTCCCCCCCACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTTACTCCCTCCTGTAACCAGGGAGCACTGTCCCCCCCACACC  400

seq1  CCCCCCGAATTTTATATAGCCTAAGGCTGTAGAGATGAACTCAGAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCGAATTTTATATAGCCTAAGGCTGTAGAGATGAACTCAGAGAACC  450

seq1  CTCAGATGGCAGTAACTGCAGTCTTTAGAAGCTTAATGTTACTCCATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGGCAGTAACTGCAGTCTTTAGAAGCTTAATGTTACTCCATTTG  500

seq1  ATCTGAAGCTGTGTAATAGGCCTTGAATCCCTTCTATCAGGAAGCAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGCTGTGTAATAGGCCTTGAATCCCTTCTATCAGGAAGCAGTGG  550

seq1  TTATCGTTATCATTTCAGAAAAACATACTGTATGCATTTTAATGAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGTTATCATTTCAGAAAAACATACTGTATGCATTTTAATGAAAGAA  600

seq1  ACAGAAAATCCCCAAAAGGATGCCATGTGCCCAATGTGATGGGGTGCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATCCCCAAAAGGATGCCATGTGCCCAATGTGATGGGGTGCACC  650

seq1  TGTAATCTCAGCACTCAGAAACAGAAAGCAGGAAGACAGTGAGTTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTCAGCACTCAGAAACAGAAAGCAGGAAGACAGTGAGTTCCAGA  700

seq1  GCAGCCTGGCGCTACATCCTGAGACTGTCTGATGTTCCGAGTACCAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGGCGCTACATCCTGAGACTGTCTGATGTTCCGAGTACCAGAAC  750

seq1  AATTATTTGATCTTAGATGAGTCTGGCACTCTAAGTTTAAAATCTTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTGATCTTAGATGAGTCTGGCACTCTAAGTTTAAAATCTTTCCC  800

seq1  TTTTACAGTTATTGTATTTCCATCCTAACACTCTCTGAGGAGAGTGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGTTATTGTATTTCCATCCTAACACTCTCTGAGGAGAGTGATGG  850

seq1  AATAGTTTTACATGCATATTCTATGGAATGACTAGGATAAGTGAATAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTTACATGCATATTCTATGGAATGACTAGGATAAGTGAATAGTA  900

seq1  GCTTTGCTCTTTGGGTCTGGACTTTGCCCTGAAAGCTGGGCCTTTTGGTG  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCTC-TTGGGTCTGGACTTTGCCCTGAAAGCTGGGCCTTTTGGTG  949

seq1  TTCCAGGGGAGTCAAAGGGAGGGTGCATAACCCTGAAACCAGAGGGCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGGAGTCAAAGGGAGGGTGCATAACCCTGAAACCAGAGGGCTTC  999

seq1  CTCAC-TTTCTGTGCAGTATTTGGCTCTCCCAGACACGAAAGCCTCATTA  1049
      ||||| ||||||||||||||| |  ||||| |||||||||||||||||||
seq2  CTCACTTTTCTGTGCAGTATTGGCTTCTCCTAGACACGAAAGCCTCATTA  1049

seq1  GCACTCCTGAT-GTGATCTTCCTGGCTGTTCCTATCTTCTTGCTT-CCTC  1097
      ||||||  ||| |||||||| || |||||| |||||||| ||||| ||||
seq2  GCACTCTGGATGGTGATCTT-CTTGCTGTT-CTATCTTC-TGCTTCCCTC  1096

seq1  CCAGCCCTCCTGGAATCCCCTTTCTGGGGTGGCAATGGATATAGCA  1143
      |||||||||  ||||| ||| ||||||||| ||||| |||||||||
seq2  CCAGCCCTCTGGGAATTCCC-TTCTGGGGT-GCAAT-GATATAGCA  1139