BAC Information

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BAC

Clone NameB6Ng01-181H12
Chromosome11 (Build37)
Map Location 116,394,106 - 116,553,973
singlet/doubletdoublet
Overlap geneSphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2
Upstream geneSumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971
Downstream geneLOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181H12.bB6Ng01-181H12.g
ACCGA007621GA007622
length1,130619
definitionB6Ng01-181H12.b B6Ng01-181H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,552,830 - 116,553,973)(116,394,106 - 116,394,722)
sequence
gaattctccgatctgggaactttttaaaatttttgtagccaatgttttaa
aattaaatttgttctttgaagttttcatatgtcaccagggcagtggtggc
gcacgcctttaatcacagcacccagaaggcagaggcaggtggatctctga
gttccaggccaatctggtgtacagagtgagttccaggacagccaccgcta
cacagagaaacctagtcttgaaaaaccaggaaataaaaaaaaagaaagac
aattctatccttgaatataacgtaatctaatcactctttcccctcctcct
cccgctcttaggtcccactcatccccaccactgtcacgcagacgaatgaa
cacattcacacacagcgcacatagacacacacactctatgcttattttaa
aaattaagttaaatatatgtgggtttactttgtttcttcattgtgagaca
gtacgtagctcataaaactcaaactggcctcagacctgctatgtagcaga
gggtggccttgaactcgtgatcctccagcttctgcctctagagtgctaga
attacagcgtgctgccatacctaatgagcacccttagctttatgaaaaca
tgcgtttttttttttttaactttttttttagagatgttcttttttttttt
ttaaactcttttttatttatttatttattatatgtaagtacactgtagct
gtcttcagacactccagaagagggcgccagatctcattatagatggttgt
gagccaccatgtggttgctgggatttgaactctggaccttcggaagagca
gtcgggtgctcttacccactgagccatctcaccagcccgaaaacatgaat
ttttgtgcttatttctaaggctgcaaagtcttcatagaggcgtatgggtg
ccgacctccctttaaggagccctaggtagcaggaagaatttggattcctg
agagagggccatgaaccaccaaagccaggggaagttggaaagtaccgtta
ggccttgggtgaggacatcaggttcagagagtccccactatcattagcca
tgcagtcactcttgtcctaagtctgcagttctcttggggtcaagcctgtg
ctgacagttactacagagtaggatagggca
gaattcaggctaggtctaagcgacgccaaagaggcgctgcatccctactg
tgaacagcagtttcgaggttcagtaagcgcagacccacgcgtacccgaag
cccgctcggatgctgggcgccggcatgtgggctgcgccctcgctttcgcg
ctccgcggatgcgctgcttcaggccgggctcagaaccccacctcttgcgg
acttcctaagctgttcctccagcaccgggcgcacaatcgtatccggggat
cctgcccctcatctgcgcgtggccgagcccaggctggcggcgactgtgtt
cggggaggtgcagtgagatcccgggcgggtgggggaccagagctgcgcgc
aactctggttccaccccgagagcacaaggaacgcggggcgtggccaggcc
ggcccagaggctcagcgccctccccgggccgccgtgaaattgagcaaaaa
gtttgagaccggaggggggcgatcccttggagtcggtgtcagcccagtgc
ttcagttgtccctctgtcgcgggtctgagtcggagaggagctgctttccg
ccactggccgcccgtgggacagattgggtagggatccccctttcccccgc
cgcgcgccctcccgtagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116552830_116553973
seq2: B6Ng01-181H12.b_48_1177 (reverse)

seq1  TGCCCTATCCCTACTCTGTAGTAACTGTCAGGCAACAGGCCTGTGACCCC  50
      |||||||| ||||||||||||||||||||||   ||||||   |||||||
seq2  TGCCCTAT-CCTACTCTGTAGTAACTGTCAG--CACAGGC--TTGACCCC  45

seq1  CAAAGAGAAACTGCCAGACTTAGGACAAGAGTGACTGCCATGGGCTATTG  100
        ||||| ||||| ||||||||||||||||||||||| ||| ||||| ||
seq2  --AAGAG-AACTG-CAGACTTAGGACAAGAGTGACTG-CAT-GGCTAATG  89

seq1  ATAGTGGGGACTCTCCTGAACCCTGATGTCCCTCACCCAAGGCCTAACGG  150
      |||||||||||||| ||||| |||||||| ||||||||||||||||||||
seq2  ATAGTGGGGACTCT-CTGAA-CCTGATGT-CCTCACCCAAGGCCTAACGG  136

seq1  TACTTTCCAACTT-CCCTGGCTTTGGTGGTTTCATGGCCCTCTCTCAGGA  199
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  TACTTTCCAACTTCCCCTGGCTTTGGTGG-TTCATGGCCCTCTCTCAGGA  185

seq1  ATCCAAATTCTTCCTGCTACCTAGGGCTCCTTAAAGGGAGGTCGGCACCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATTCTTCCTGCTACCTAGGGCTCCTTAAAGGGAGGTCGGCACCC  235

seq1  ATACGCCTCTATGAAGACTTTGCAGCCTTAGAAATAAGCACAAAAATTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGCCTCTATGAAGACTTTGCAGCCTTAGAAATAAGCACAAAAATTCA  285

seq1  TGTTTTCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC  335

seq1  TTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC  385

seq1  CATCTATAATGAGATCTGGCGCCCTCTTCTGGAGTGTCTGAAGACAGCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATAATGAGATCTGGCGCCCTCTTCTGGAGTGTCTGAAGACAGCTA  435

seq1  CAGTGTACTTACATATAATAAATAAATAAATAAAAAAGAGTTTAAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACTTACATATAATAAATAAATAAATAAAAAAGAGTTTAAAAAAA  485

seq1  AAAAAAGAACATCTCTAAAAAAAAAGTTAAAAAAAAAAAAACGCATGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAACATCTCTAAAAAAAAAGTTAAAAAAAAAAAAACGCATGTTT  535

seq1  TCATAAAGCTAAGGGTGCTCATTAGGTATGGCAGCACGCTGTAATTCTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGCTAAGGGTGCTCATTAGGTATGGCAGCACGCTGTAATTCTAG  585

seq1  CACTCTAGAGGCAGAAGCTGGAGGATCACGAGTTCAAGGCCACCCTCTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTAGAGGCAGAAGCTGGAGGATCACGAGTTCAAGGCCACCCTCTGC  635

seq1  TACATAGCAGGTCTGAGGCCAGTTTGAGTTTTATGAGCTACGTACTGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGCAGGTCTGAGGCCAGTTTGAGTTTTATGAGCTACGTACTGTCT  685

seq1  CACAATGAAGAAACAAAGTAAACCCACATATATTTAACTTAATTTTTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGAAGAAACAAAGTAAACCCACATATATTTAACTTAATTTTTAAA  735

seq1  ATAAGCATAGAGTGTGTGTGTCTATGTGCGCTGTGTGTGAATGTGTTCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATAGAGTGTGTGTGTCTATGTGCGCTGTGTGTGAATGTGTTCAT  785

seq1  TCGTCTGCGTGACAGTGGTGGGGATGAGTGGGACCTAAGAGCGGGAGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGCGTGACAGTGGTGGGGATGAGTGGGACCTAAGAGCGGGAGGAG  835

seq1  GAGGGGAAAGAGTGATTAGATTACGTTATATTCAAGGATAGAATTGTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAAGAGTGATTAGATTACGTTATATTCAAGGATAGAATTGTCTT  885

seq1  TCTTTTTTTTTATTTCCTGGTTTTTCAAGACTAGGTTTCTCTGTGTAGCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTATTTCCTGGTTTTTCAAGACTAGGTTTCTCTGTGTAGCG  935

seq1  GTGGCTGTCCTGGAACTCACTCTGTACACCAGATTGGCCTGGAACTCAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTCCTGGAACTCACTCTGTACACCAGATTGGCCTGGAACTCAGA  985

seq1  GATCCACCTGCCTCTGCCTTCTGGGTGCTGTGATTAAAGGCGTGCGCCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACCTGCCTCTGCCTTCTGGGTGCTGTGATTAAAGGCGTGCGCCAC  1035

seq1  CACTGCCCTGGTGACATATGAAAACTTCAAAGAACAAATTTAATTTTAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCTGGTGACATATGAAAACTTCAAAGAACAAATTTAATTTTAAA  1085

seq1  ACATTGGCTACAAAAATTTTAAAAAGTTCCCAGATCGGAGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGCTACAAAAATTTTAAAAAGTTCCCAGATCGGAGAATTC  1130

seq1: chr11_116394106_116394722
seq2: B6Ng01-181H12.g_65_683

seq1  GAATTCAGGCTAGGTCTAAGCGACGCCAAAGAGGCGCTGCATCCCTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTAGGTCTAAGCGACGCCAAAGAGGCGCTGCATCCCTACTG  50

seq1  TGAACAGCAGTTTCGAGGTTCAGTAAGCGCAGACCCACGCGTACCCGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCAGTTTCGAGGTTCAGTAAGCGCAGACCCACGCGTACCCGAAG  100

seq1  CCCGCTCGGATGCTGGGCGCCGGCATGTGGGCTGCGCCCTCGCTTTCGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTCGGATGCTGGGCGCCGGCATGTGGGCTGCGCCCTCGCTTTCGCG  150

seq1  CTCCGCGGATGCGCTGCTTCAGGCCGGGCTCAGAACCCCACCTCTTGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCGGATGCGCTGCTTCAGGCCGGGCTCAGAACCCCACCTCTTGCGG  200

seq1  ACTTCCTAAGCTGTTCCTCCAGCACCGGGCGCACAATCGTATCCGGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAAGCTGTTCCTCCAGCACCGGGCGCACAATCGTATCCGGGGAT  250

seq1  CCTGCCCCTCATCTGCGCGTGGCCGAGCCCAGGCTGGCGGCGACTGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCTCATCTGCGCGTGGCCGAGCCCAGGCTGGCGGCGACTGTGTT  300

seq1  CGGGGAGGTGCAGTGAGATCCCGGGCGGGTGGGGGACCAGAGCTGCGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAGGTGCAGTGAGATCCCGGGCGGGTGGGGGACCAGAGCTGCGCGC  350

seq1  AACTCTGGTTCCACCCCGAGAGCACAAGGAACGCGGGGCGTGGCCAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGTTCCACCCCGAGAGCACAAGGAACGCGGGGCGTGGCCAGGCC  400

seq1  GGCCCAGAGGCTCAGCGCCCTCCCCGGGCCGCCGTGAAATTGAGCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGAGGCTCAGCGCCCTCCCCGGGCCGCCGTGAAATTGAGCAAAAA  450

seq1  GTTTGAGACCGGAGGGGGGCGATCCCTTGGAGTCGGTGTCAGCCCAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGACCGGAGGGGGGCGATCCCTTGGAGTCGGTGTCAGCCCAGTGC  500

seq1  TTCAGTTGTCCCTCTGTCGCGGGTCTGAGTCGGAGAGGAGCTGCTTTCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGTCCCTCTGTCGCGGGTCTGAGTCGGAGAGGAGCTGCTTTCCG  550

seq1  CCACTGGCCGCCCGTGGGACAGATTGGGTAGGGAT-CCCCTTTCCCCCG-  598
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  CCACTGGCCGCCCGTGGGACAGATTGGGTAGGGATCCCCCTTTCCCCCGC  600

seq1  CGCGCGCCCTCCCGTAGTT  617
      ||||||||||||||||| |
seq2  CGCGCGCCCTCCCGTAGAT  619