BAC Information

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BAC

Clone NameB6Ng01-182I19
Chromosome11 (Build37)
Map Location 68,086,380 - 68,212,300
singlet/doubletdoublet
Overlap geneNtn1
Upstream geneMyh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8
Downstream genePik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182I19.bB6Ng01-182I19.g
ACCGA008408GA008409
length3361,152
definitionB6Ng01-182I19.b B6Ng01-182I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,211,965 - 68,212,300)(68,086,380 - 68,087,515)
sequence
catgccactcaccaacttctgactggaagtcactcctcccttctgaggct
cagtttcctcgtttgcaaaacaagaataaatgagatcacagttggcccca
agtgctggagtctccgagtagaaggatcccacacactacccacacctcca
gccaccagcctggagagcacacacccctggcatcttcccaaggcttcacc
aacacctccttggagtgttagcaaccccgcattttctttcaggatggctc
tacccaccccttgctgcaactgggtactagactccaactctcctacaaac
tgctttctaagggtctctaggtgggggggggggtag
gaattccacaggtaagatgactgagatttaaggtgccatgagattagccc
gatgccctgtggactgtatacatgaggtaccatgctgaggtacgctcttc
ctgcagtttctcttctggctgcaggatctgagctgcctctttcactcctt
gcaaagtggaggccactttgtggatagggaccttcatgccttaagcgaga
ggcaccgattatcttcttgactccgagggtaaaagttcttctccccggac
cacccaaattatggaacatggaactgtcatgagggacccagaaaggggga
gaatagacacctaatactttgctagggtgagtggacactgccatgaaatc
aaagagcggtgtgggagggacttagctctgctgagactcagttggccagg
tctaagtacacagatgcacaagtgacacacaaatgacacacatgtctcac
ccggcaagatttaaaattaaaagacctttacgtgccccctccaagtgttc
gtcgaaacagtctttaaaacatctgaattcaccaattagtaatctctccc
ctcaatggaataaactaggtctcccctggggatgtcctggatccaaggca
agagcaccctgccacctttatctcctatagaccaacccctgccctggcag
ttctcagccttggagagagctttcccaggccagcttgtctccacctcata
tggacccattaatgaaaccagaatccctggggtggggcccaagtggcatt
ttacaccatcccaggtaatcctcacatgtaaccaagagtgacaagttggg
taaaaaagatgcctatgatgccaggaagggaaagaaaaaaaaaatccaaa
ggaaaaataaccaagggtggagaggggccagggagacagttccatatagt
gaccccagaagccagaggggagctggactggggttctcacttcctccccc
ctccccaccaaccctggcaggagctgcaggaagaaaaagttgatggggag
cggtcaagattgccaggccagggctgttcccactaatgatttgcatcctt
cttagggctccgcactggcgcaacacacggcatgcacgtcttagccagga
ttcctttcagccacaattcagtggagaagagaataagggccagggcatgt
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68211965_68212300
seq2: B6Ng01-182I19.b_48_383 (reverse)

seq1  CTACCCCCCCCCCCACCTAGAGACCCTTAGAAAGCAGTTTGTAGGAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCCCCCCCCACCTAGAGACCCTTAGAAAGCAGTTTGTAGGAGAGT  50

seq1  TGGAGTCTAGTACCCAGTTGCAGCAAGGGGTGGGTAGAGCCATCCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTAGTACCCAGTTGCAGCAAGGGGTGGGTAGAGCCATCCTGAAA  100

seq1  GAAAATGCGGGGTTGCTAACACTCCAAGGAGGTGTTGGTGAAGCCTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCGGGGTTGCTAACACTCCAAGGAGGTGTTGGTGAAGCCTTGGG  150

seq1  AAGATGCCAGGGGTGTGTGCTCTCCAGGCTGGTGGCTGGAGGTGTGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCAGGGGTGTGTGCTCTCCAGGCTGGTGGCTGGAGGTGTGGGTA  200

seq1  GTGTGTGGGATCCTTCTACTCGGAGACTCCAGCACTTGGGGCCAACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGGATCCTTCTACTCGGAGACTCCAGCACTTGGGGCCAACTGTG  250

seq1  ATCTCATTTATTCTTGTTTTGCAAACGAGGAAACTGAGCCTCAGAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTTATTCTTGTTTTGCAAACGAGGAAACTGAGCCTCAGAAGGGA  300

seq1  GGAGTGACTTCCAGTCAGAAGTTGGTGAGTGGCATG  336
      ||||||||||||||||||||||||||||||||||||
seq2  GGAGTGACTTCCAGTCAGAAGTTGGTGAGTGGCATG  336

seq1: chr11_68086380_68087515
seq2: B6Ng01-182I19.g_63_1214

seq1  GAATTCCACAGGTAAGATGACTGAGATTTAAGGTGCCATGAGATTAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGTAAGATGACTGAGATTTAAGGTGCCATGAGATTAGCCC  50

seq1  GATGCCCTGTGGACTGTATACATGAGGTACCATGCTGAGGTACGCTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTGTGGACTGTATACATGAGGTACCATGCTGAGGTACGCTCTTC  100

seq1  CTGCAGTTTCTCTTCTGGCTGCAGGATCTGAGCTGCCTCTTTCACTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTTCTCTTCTGGCTGCAGGATCTGAGCTGCCTCTTTCACTCCTT  150

seq1  GCAAAGTGGAGGCCACTTTGTGGATAGGGACCTTCATGCCTTAAGCGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGGAGGCCACTTTGTGGATAGGGACCTTCATGCCTTAAGCGAGA  200

seq1  GGCACCGATTATCTTCTTGACTCCGAGGGTAAAAGTTCTTCTCCCCGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCGATTATCTTCTTGACTCCGAGGGTAAAAGTTCTTCTCCCCGGAC  250

seq1  CACCCAAATTATGGAACATGGAACTGTCATGAGGGACCCAGAAAGGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAATTATGGAACATGGAACTGTCATGAGGGACCCAGAAAGGGGGA  300

seq1  GAATAGACACCTAATACTTTGCTAGGGTGAGTGGACACTGCCATGAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGACACCTAATACTTTGCTAGGGTGAGTGGACACTGCCATGAAATC  350

seq1  AAAGAGCGGTGTGGGAGGGACTTAGCTCTGCTGAGACTCAGTTGGCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCGGTGTGGGAGGGACTTAGCTCTGCTGAGACTCAGTTGGCCAGG  400

seq1  TCTAAGTACACAGATGCACAAGTGACACACAAATGACACACATGTCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTACACAGATGCACAAGTGACACACAAATGACACACATGTCTCAC  450

seq1  CCGGCAAGATTTAAAATTAAAAGACCTTTACGTGCCCCCTCCAAGTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAAGATTTAAAATTAAAAGACCTTTACGTGCCCCCTCCAAGTGTTC  500

seq1  GTCGAAACAGTCTTTAAAACATCTGAATTCACCAATTAGTAATCTCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAAACAGTCTTTAAAACATCTGAATTCACCAATTAGTAATCTCTCCC  550

seq1  CTCAATGGAATAAACTAGGTCTCCCCTGGGGATGTCCTGGATCCAAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGGAATAAACTAGGTCTCCCCTGGGGATGTCCTGGATCCAAGGCA  600

seq1  AGAGCACCCTGCCACCTTTATCTCCTATAGACCAACCCCTGCCCTGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCCTGCCACCTTTATCTCCTATAGACCAACCCCTGCCCTGGCAG  650

seq1  TTCTCAGCCTTGGAGAGAGCTTTCCCAGGCCAGCTTGTCTCCACCTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGCCTTGGAGAGAGCTTTCCCAGGCCAGCTTGTCTCCACCTCATA  700

seq1  TGGACCCATTAATGAAACCAGAATCCCTGGGGTGGGGCCCAAGTGGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCATTAATGAAACCAGAATCCCTGGGGTGGGGCCCAAGTGGCATT  750

seq1  TTACACCATCCCAGGTAATCCTCACATGTAACCAAGAGTGACAAGTTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCATCCCAGGTAATCCTCACATGTAACCAAGAGTGACAAGTTGGG  800

seq1  TAAAAAAGATGCCTATGATGCCAGGAAGGGAAAG-AAAAAAAAATCCAAA  849
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAAAAAGATGCCTATGATGCCAGGAAGGGAAAGAAAAAAAAAATCCAAA  850

seq1  GGAAAAATAACCAAGGGTGGAGAGGGGCCAGGGAGACAGTTCCATATAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATAACCAAGGGTGGAGAGGGGCCAGGGAGACAGTTCCATATAGT  900

seq1  GACCCCAAGAAGCCAGA-GGGAGCTGGACTGGGGTTCTCACTT-CTCCCC  947
      |||||| |||||||||| ||||||||||||||||||||||||| ||||||
seq2  GACCCC-AGAAGCCAGAGGGGAGCTGGACTGGGGTTCTCACTTCCTCCCC  949

seq1  C--TCCCACCAACCCTTGGCA-GAGCTGCAGGAAG-AAAAGTTGAT-GGG  992
      |   ||||||||||| ||||| ||||||||||||| |||||||||| |||
seq2  CCTCCCCACCAACCC-TGGCAGGAGCTGCAGGAAGAAAAAGTTGATGGGG  998

seq1  AGCGGTCAAGATTG-CAGGGCAGGGCTGGTCCCACTAATGA-TTGCATCT  1040
      |||||||||||||| |||| |||||||| |||||||||||| ||||||| 
seq2  AGCGGTCAAGATTGCCAGGCCAGGGCTGTTCCCACTAATGATTTGCATCC  1048

seq1  TTC-TAAGGCTCCGCACT-GCGC-ACACAC-GCATGCACGTCTTAG-CAG  1085
      ||| || ||||||||||| |||| |||||| ||||||||||||||| |||
seq2  TTCTTAGGGCTCCGCACTGGCGCAACACACGGCATGCACGTCTTAGCCAG  1098

seq1  CCTT-CTTTCAGCCAC-ATTCAGTGAAGAAGAGAAAAGGGGGCAGGGCA-  1132
        || ||||||||||| |||||||| ||||||||| | ||| ||||||| 
seq2  GATTCCTTTCAGCCACAATTCAGTGGAGAAGAGAATAAGGGCCAGGGCAT  1148

seq1  GTGA  1136
      ||||
seq2  GTGA  1152