BAC Information

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BAC

Clone NameB6Ng01-183H09
Chromosome12 (Build37)11 (Build37)
Map Location 105,111,378 - 105,111,70641,456,255 - 41,457,456
singlet/doubletsingletsinglet
Overlap geneLOC667954
Upstream geneBtbd7, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a
Downstream geneSerpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183H09.bB6Ng01-183H09.g
ACCGA009076GA009077
length1,1001,197
definitionB6Ng01-183H09.b B6Ng01-183H09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,111,378 - 105,111,706)(41,456,255 - 41,457,456)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaacattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattagacatagtactaccggaggatccagcaatatctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagctttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagagtgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggtccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgacactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggataacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
ataggtggaacaacattatgaaactaatcagtaccccggagctctgactc
tagctgcatatgtatcaaagatggcctagtcggccatcactgaagagagg

gaattccatatgtaagtactgtatttacatcatttgtatgtatactctcc
ctccaattcatttcttctcctctcctcaattctaatgttgtacacagaca
tgtgtattagctttccagagttagttctccccttcttgcctggaattttt
gatagaactctggttttcaggcttgcataggaaccttttttaacccactg
atctatgttgccagaccttgtttggcatttttaatagaaaataaaccaag
ggttttgtggaagtatatctcattgttggggatctaagtgtgtgctttgt
ataaattaaaaatctatatttatttgaatgtaaaacttccattttgtttc
attatagatctgtttattcttctaatacctcgtggttctaattatcatag
cattagccagagttagtattgaataaattgcttatcacattaaaataaca
ctttaaatatctttcttgggccagagcaggtgatgagagaggtaaaaaag
gttgacactggaggacacgctttatccacagctactgtgacacctaccaa
ctatagaaacctcacttctcaggagtatgtcacctgcttcgttcgtaaca
caaccaggttgctttttataaagcaaagacattgccacctctactttaaa
agaagcagaaagcttcttttagtctgttacttatagaatgagaaaacgag
gagacttgtgggattctaggcacgttttttttacttgacatcttctaaac
atctctggataatgactagactctaagtgaggaagcataagcatcctaat
gagctattgtgtttcaacttcccccacaaccagtagcatgagaccttctc
tagtcttctgacctctataagacctatttttttttttcaagaaaatgggg
ttgagtgattctgaagacccagaatatttctaagcaggtatataaaaatt
attatcaatataatttagttattattgcacatttctaaattcccaaattc
tcacagataaagtacagatttcagaggaacatttagatgttgacatagaa
tgagtgcatttattgtagagggaatcagaaaacagacagcaagaaaaaca
gagtctcttttccaatttcatttgtaattttctttaaggaaaaacatgta
tatgttctagaaatcataagagatcacaccttggggtagtttatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_105111378_105111706
seq2: B6Ng01-183H09.b_821_1146 (reverse)

seq1  CCTCTCTTTCCAGTGATGACCGACTAGGCCATCTTTTGATACATATGCAG  50
      ||||||||  |||||||| |||||||||||||| ||||||||||||||||
seq2  CCTCTCTT--CAGTGATGGCCGACTAGGCCATC-TTTGATACATATGCAG  47

seq1  CTAGAGACAAGAGCTCCGGGGTACTGGTTAG-TTCATAATTTTGTTCCAC  99
      |||||| | ||||||||||||||||| |||| |||||||| |||||||||
seq2  CTAGAGTC-AGAGCTCCGGGGTACTGATTAGTTTCATAATGTTGTTCCAC  96

seq1  CTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTAATCTCTCTAGGTCCT  149
      |||||||||||||| |||||||||||||||||||| | ||||||| ||||
seq2  CTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCT  146

seq1  CCATTGGGGGCCGTGTGATCCATCCAATAGCTGACTGTGAGCATTCACTT  199
      |||||||| ||| ||| ||||||||| ||||||||||||||||| |||||
seq2  CCATTGGGAGCCCTGTTATCCATCCATTAGCTGACTGTGAGCATCCACTT  196

seq1  CTGTGTTTGCTAGGCCCCAGCATAGTCTCACAAGAGAGAGCTATATCTGG  249
      |||||||||||||||||| ||||||| |||||||||| ||||| ||||||
seq2  CTGTGTTTGCTAGGCCCCGGCATAGTGTCACAAGAGACAGCTACATCTGG  246

seq1  GTCCTTTCAGCAAAATCTTGCTAGTGTGTGCAATGGTGTCAGCATTTGGA  299
      ||||||||   |||||||||||||||| ||||||||||||||| ||||||
seq2  GTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGA  296

seq1  AGCTGATTATGGGATGGATCCCTGGATATG  329
       |||||||||||| ||||||||||||||||
seq2  TGCTGATTATGGGGTGGATCCCTGGATATG  326

seq1: chr11_41456255_41457456
seq2: B6Ng01-183H09.g_67_1263

seq1  GAATTCCATATGTAAGTACTGTATTTACATCATTTGTATGTATACTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGTAAGTACTGTATTTACATCATTTGTATGTATACTCTCC  50

seq1  CTCCAATTCATTTCTTCTCCTCTCCTCAATTCTAATGTTGTACACAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTCATTTCTTCTCCTCTCCTCAATTCTAATGTTGTACACAGACA  100

seq1  TGTGTATTAGCTTTCCAGAGTTAGTTCTCCCCTTCTTGCCTGGAATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTAGCTTTCCAGAGTTAGTTCTCCCCTTCTTGCCTGGAATTTTT  150

seq1  GATAGAACTCTGGTTTTCAGGCTTGCATAGGAACCTTTTTTAACCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACTCTGGTTTTCAGGCTTGCATAGGAACCTTTTTTAACCCACTG  200

seq1  ATCTATGTTGCCAGACCTTGTTTGGCATTTTTAATAGAAAATAAACCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTTGCCAGACCTTGTTTGGCATTTTTAATAGAAAATAAACCAAG  250

seq1  GGTTTTGTGGAAGTATATCTCATTGTTGGGGATCTAAGTGTGTGCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTGGAAGTATATCTCATTGTTGGGGATCTAAGTGTGTGCTTTGT  300

seq1  ATAAATTAAAAATCTATATTTATTTGAATGTAAAACTTCCATTTTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTAAAAATCTATATTTATTTGAATGTAAAACTTCCATTTTGTTTC  350

seq1  ATTATAGATCTGTTTATTCTTCTAATACCTCGTGGTTCTAATTATCATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGATCTGTTTATTCTTCTAATACCTCGTGGTTCTAATTATCATAG  400

seq1  CATTAGCCAGAGTTAGTATTGAATAAATTGCTTATCACATTAAAATAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCCAGAGTTAGTATTGAATAAATTGCTTATCACATTAAAATAACA  450

seq1  CTTTAAATATCTTTCTTGGGCCAGAGCAGGTGATGAGAGAGGTAAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATATCTTTCTTGGGCCAGAGCAGGTGATGAGAGAGGTAAAAAAG  500

seq1  GTTGACACTGGAGGACACGCTTTATCCACAGCTACTGTGACACCTACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACACTGGAGGACACGCTTTATCCACAGCTACTGTGACACCTACCAA  550

seq1  CTATAGAAACCTCACTTCTCAGGAGTATGTCACCTGCTTCGTTCGTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAACCTCACTTCTCAGGAGTATGTCACCTGCTTCGTTCGTAACA  600

seq1  CAACCAGGTTGCTTTTTATAAAGCAAAGACATTGCCACCTCTACTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGGTTGCTTTTTATAAAGCAAAGACATTGCCACCTCTACTTTAAA  650

seq1  AGAAGCAGAAAGCTTCTTTTAGTCTGTTACTTATAGAATGAGAAAACGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGAAAGCTTCTTTTAGTCTGTTACTTATAGAATGAGAAAACGAG  700

seq1  GAGACTTGTGGGATTCTAGGCACGTTTTTTTTACTTGACATCTTCTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGTGGGATTCTAGGCACGTTTTTTTTACTTGACATCTTCTAAAC  750

seq1  ATCTCTGGATAATGACTAGACTCTAAGTGAGGAAGCATAAGCATCCTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGATAATGACTAGACTCTAAGTGAGGAAGCATAAGCATCCTAAT  800

seq1  GAGCTATTGTGTTTCAACTTCCCCCACAACCAGTAGCATGAGACCTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATTGTGTTTCAACTTCCCCCACAACCAGTAGCATGAGACCTTCTC  850

seq1  TAGTCTTCTGACCTCTATAAGACCTA-TTTTTTTTTTCAAGAAAATGGGG  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGTCTTCTGACCTCTATAAGACCTATTTTTTTTTTTCAAGAAAATGGGG  900

seq1  TTGAGTGATTCTGAAGACCCAGAATATTTCTAAGCAGGTATATAAAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGATTCTGAAGACCCAGAATATTTCTAAGCAGGTATATAAAAATT  950

seq1  ATTATCAATATAA-TTAG-TATTATTGCACATTTCTAAATTCCCAAATTC  997
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  ATTATCAATATAATTTAGTTATTATTGCACATTTCTAAATTCCCAAATTC  1000

seq1  TCACAGATAAAGTACAGATTTCAGAGGAACAATTAGAATGTTGAACATAG  1047
      ||||||||||||||||||||||||||||||| |||| |||||| ||||||
seq2  TCACAGATAAAGTACAGATTTCAGAGGAACATTTAG-ATGTTG-ACATAG  1048

seq1  AAAATGAGGTGCATTTATGTTAGAAGGAATTCAGAAAACAGACAGCAAAG  1097
        ||||| ||||||||||  |||| |||| ||||||||||||||||||  
seq2  --AATGA-GTGCATTTATTGTAGAGGGAA-TCAGAAAACAGACAGCAAGA  1094

seq1  AAAACCAAGAGTTCTCTTTTCCCATTTTCATATGTATTTTCTTTTTAAAG  1147
      |||||  |||| |||||||| ||| |||||| |||| ||| | ||||| |
seq2  AAAAC--AGAG-TCTCTTTT-CCAATTTCATTTGTAATTT-TCTTTAAGG  1139

seq1  AAAAAAACAT-TGTATG-TCTAGAAAATTCATAAGAAATCACAC----TG  1191
        |||||||| | |||| ||||||||  |||||||| |||||||     |
seq2  --AAAAACATGTATATGTTCTAGAAA--TCATAAGAGATCACACCTTGGG  1185

seq1  GTAG-TTATTTG  1202
      |||| |||||||
seq2  GTAGTTTATTTG  1197