BAC Information

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BAC

Clone NameB6Ng01-183J07
Chromosome11 (Build37)
Map Location 106,673,166 - 106,823,417
singlet/doubletdoublet
Overlap geneCcdc45, Smurf2
Upstream geneTanc2, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5
Downstream geneLOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183J07.bB6Ng01-183J07.g
ACCGA009168GA009169
length353825
definitionB6Ng01-183J07.b B6Ng01-183J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,673,166 - 106,673,518)(106,822,597 - 106,823,417)
sequence
aatccaaagttgaatatgcaatgcctgtgtgcttaacagtacacatattc
gtgtgtctgtgtgtatgtgtgtgagtgagtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtaggtctgttcatatgggcatgtgcatttgtgtttgt
gaacatggatatggaggcctgaggccatcatcaggtttctccctccagtg
ctcttcctgttgttttgagccagtctctcctgatggaggcaggaacctta
gctatggcaggggctggcagtgcgctgagttggggttacagacactctgt
ctcactctgcttcttaccttagtgctggacgtctagactcttgctcagac
agc
gaattcaaataccacttatcccacgagggagggagcagagacccaagcta
ccagcctctctttgagcagctgggagccaggcttcctggggtggggagct
caggcctcaattctcaggtctagttcctcaggcttgggctccaccctggc
tgcgaaggccccagaccacctcgccccaccctgagaactcgacctctagt
tcagccacatgaaggtaaccagcgtctggtggcttatgggacagacttgt
cagggacttcctgcctttgatgcatgcaattcccatgctatgtgcgctgg
gctgggcctcagaagacgagaggacccttagacatcctgagtgtctcgct
gctgagactcttggggtttgtggttagaggcgctgctgtgaacaccgtgt
tctagagaatgtgccctctggggctgcaaaaagctgacaaagtcaagttg
accaagaaggtctgaaaggcccttgaatttgctgcttttagcagagattg
agtgaagggcaatgggcgtggtgggggagggagaaaggaggttgcgccat
cgcagagaaattgaccacagatagactccttctgctgggctcttctctcc
ttcactccaactgtctcaaaggccacaggaaatttctccagcactcactg
ttactgaggcctgagacatgacactgcatttgtgtgttctcacagatgga
ggagacactgagggtcaatgaagcttcaagtgactgtcccaaagaatgca
gagagatatcattggaacatggcagagcggaccccattctcctttgccgt
ctgcagggcttcaaccaaagcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106673166_106673518
seq2: B6Ng01-183J07.b_50_402

seq1  AATCCAAAGTTGAATATGCAATGCCTGTGTGCTTAACAGTACACATATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAAGTTGAATATGCAATGCCTGTGTGCTTAACAGTACACATATTC  50

seq1  GTGTGTCTGTGTGTATGTGTGTGAGTGAGTGTGTGTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTGTGTATGTGTGTGAGTGAGTGTGTGTGTGTGTGTGTGTGT  100

seq1  GTGTGTGTGTGTGTAGGTCTGTTCATATGGGCATGTGCATTTGTGTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTAGGTCTGTTCATATGGGCATGTGCATTTGTGTTTGT  150

seq1  GAACATGGATATGGAGGCCTGAGGCCATCATCAGGTTTCTCCCTCCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGATATGGAGGCCTGAGGCCATCATCAGGTTTCTCCCTCCAGTG  200

seq1  CTCTTCCTGTTGTTTTGAGCCAGGCTCTCCTGATGGAGGCAGGAACCTTA  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCTTCCTGTTGTTTTGAGCCAGTCTCTCCTGATGGAGGCAGGAACCTTA  250

seq1  GCTATGGCAGGGGCTGGCAGTGCGCTGAGCTGGGGTTACAGACACTCTGT  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTATGGCAGGGGCTGGCAGTGCGCTGAGTTGGGGTTACAGACACTCTGT  300

seq1  CTCACCCGGCTTCTTACCTGAGTGCTGGACGTCTAGACTCATGCACAGAC  350
      ||||| | ||||||||||| |||||||||||||||||||| ||| |||||
seq2  CTCACTCTGCTTCTTACCTTAGTGCTGGACGTCTAGACTCTTGCTCAGAC  350

seq1  AGC  353
      |||
seq2  AGC  353

seq1: chr11_106822597_106823417
seq2: B6Ng01-183J07.g_67_891 (reverse)

seq1  CCAGGCTTT-GTTGAAGCCCTGCAGGACGGCAAAGAAG-ATGGGGTCCGC  48
      ||||||||| |||||||||||||| |||||||||| || |||||||||||
seq2  CCAGGCTTTGGTTGAAGCCCTGCA-GACGGCAAAGGAGAATGGGGTCCGC  49

seq1  TCTGCCATGTTCCAATGCTATCTCTCTGCATTC-TTGGGACAGTCACTTG  97
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  TCTGCCATGTTCCAATGATATCTCTCTGCATTCTTTGGGACAGTCACTTG  99

seq1  -AGCTTCATTGACCCTCAGTGTCTCCTCCATCTGTGAGAACACACAAATG  146
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCATTGACCCTCAGTGTCTCCTCCATCTGTGAGAACACACAAATG  149

seq1  CAGTGTCATGTCTCAGGCCTCAGTAACAGTGAGTGCTGGAGAAATTTCCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCATGTCTCAGGCCTCAGTAACAGTGAGTGCTGGAGAAATTTCCT  199

seq1  GTGGCCTTTGAGACAGTTGGAGTGAAGGAGAGAAGAGCCCAGCAGAAGGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTGAGACAGTTGGAGTGAAGGAGAGAAGAGCCCAGCAGAAGGA  249

seq1  GTCTATCTGTGGTCAA-TTCTCTGCGATGGCGCAACCTCCTTTCTCCCTC  295
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTCTATCTGTGGTCAATTTCTCTGCGATGGCGCAACCTCCTTTCTCCCTC  299

seq1  CCCCACCACGCCCATTGCCCTTCACTCAATCTCTGCTAAAAGCAGCAAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCACGCCCATTGCCCTTCACTCAATCTCTGCTAAAAGCAGCAAAT  349

seq1  TCAAGGGCCTTTCAGACCTTCTTGGTCAACTTGACTTTGTCAGCTTTTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGCCTTTCAGACCTTCTTGGTCAACTTGACTTTGTCAGCTTTTTG  399

seq1  CAGCCCCAGAGGGCACATTCTCTAGAACACGGTGTTCACAGCAGCGCCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCAGAGGGCACATTCTCTAGAACACGGTGTTCACAGCAGCGCCTC  449

seq1  TAACCACAAACCCCAAGAGTCTCAGCAGCGAGACACTCAGGATGTCTAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACAAACCCCAAGAGTCTCAGCAGCGAGACACTCAGGATGTCTAAG  499

seq1  GGTCCTCTCGTCTTCTGAGGCCCAGCCCAGCGCACATAGCATGGGAATTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTCGTCTTCTGAGGCCCAGCCCAGCGCACATAGCATGGGAATTG  549

seq1  CATGCATCAAAGGCAGGAAGTCCCTGACAAGTCTGTCCCATAAGCCACCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCAAAGGCAGGAAGTCCCTGACAAGTCTGTCCCATAAGCCACCA  599

seq1  GACGCTGGTTACCTTCATGTGGCTGAACTAGAGGTCGAGTTCTCAGGGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTGGTTACCTTCATGTGGCTGAACTAGAGGTCGAGTTCTCAGGGTG  649

seq1  GGGCGAGGTGGTCTGGGGCCTTCGCAGCCAGGGTGGAGCCCAAGCCTGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAGGTGGTCTGGGGCCTTCGCAGCCAGGGTGGAGCCCAAGCCTGAG  699

seq1  GAACTAGACCTGAGAATTGAGGCCTGAGCTCCCCACCCCAGGAAGCCTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGACCTGAGAATTGAGGCCTGAGCTCCCCACCCCAGGAAGCCTGG  749

seq1  CTCCCAGCTGCTCAAAGAGAGGCTGGTAGCTTGGGTCTCTGCTCCCTCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCTGCTCAAAGAGAGGCTGGTAGCTTGGGTCTCTGCTCCCTCCC  799

seq1  TCGTGGGATAAGTGGTATTTGAATTC  821
      ||||||||||||||||||||||||||
seq2  TCGTGGGATAAGTGGTATTTGAATTC  825