BAC Information

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BAC

Clone NameB6Ng01-183J13
Chromosome11 (Build37)
Map Location 118,017,346 - 118,186,633
singlet/doubletdoublet
Overlap genePscd1, Usp36, Timp2
Upstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17
Downstream geneDdc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183J13.bB6Ng01-183J13.g
ACCGA009180GA009181
length957523
definitionB6Ng01-183J13.b B6Ng01-183J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,017,346 - 118,018,292)(118,186,100 - 118,186,633)
sequence
gaattccaaagggcacacaatctcagaaactatctgcagttggcaaaacc
atgcctctactagagcatgaggcaaatcacaatcagctgctgtggacagt
ttgagcagcccacattccacacctgggattaaatcaacaccacattctta
tagtattgccagtatgctgatgtggtagcaggcactctgtagatgggggg
tggtggtgatgagcccactgtggaaactacaagctgtatcatgctacagt
gaggatgggctttagggtcaaaagcaaagtcaaggttacagtgatgggac
caggaacatgagggtgagagaagagcttggcatgagacagacagacagac
agactgacaaagaggagaaagaaccagtgttggcaggttggcagggccct
gaagccctggaacaccaacatgagtagcacactgttgccctgctatacat
ccttgtttctaatgtagccaattgtagcaaactaagagaagatggtttct
gagaaccccagcaggaggggttaaacaagggccacagcatcccagaggga
cccctgtgctctcaagggaaaagacacctctcactaatttgagatggagg
aaggaaagcaaaactactgtagcgggaagccacatgcgtcattagtttta
gaataatttgttgctaaagtaaaggcatgtaaccacaaacaatctcactt
acgtctgcataattcagccagcaaaacaaaaacactgacctcagcaggcg
tctctcagctcagcacagaactctagggaaagctttcccagcagagtcta
tgcttcctaaggctggatcaggctgccaggggacctggtacagggacctt
cacctccgaggtcttcagccttcctcatttcctcgtggagcgggagcact
ggagctcaccatttaggtctagtttctaaatcccccttgggtttcataaa
atataca
caggctagtaaaagttacctagtgttctctctctctctctctctctctct
ctctctctctctctctctctctccctcctccctttctctctacacacaca
catctacacacacacccccacacacccacacacacacacacagtcttgtt
ggatttatgaacatgtcttcaaggctcaatacaccgtgtgttggtgaccc
aagggacagaaaggagcccctccggagggagaaccatgactcttttgtgc
agttgttatccgtggagtattctgaatcttaagttgcctttagccatggc
catcatctagagtttctagcaccttccctcctaaagaggacagaagcagg
acagcccagcctctgttgttgttcctgggcagtttttactgttaaatgca
aacatggcccatcatctttgggtctgtgtggtgacctcaacacccaccta
ggtcttttccatccccttctgctgggtacactgggaatgtttttgcacgc
ttctgccgggggaagtgatatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_118017346_118018292
seq2: B6Ng01-183J13.b_44_1000

seq1  GAATTCCAAAGGGCACACAATCTCAGAAACTATCTGCAGTTGGCAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGGGCACACAATCTCAGAAACTATCTGCAGTTGGCAAAACC  50

seq1  ATGCCTCTACTAGAGCATGAGGCAAATCACAATCAGCTGCTGTGGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTACTAGAGCATGAGGCAAATCACAATCAGCTGCTGTGGACAGT  100

seq1  TTGAGCAGCCCACATTCCACACCTGGGATTAAATCAACACCACATTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAGCCCACATTCCACACCTGGGATTAAATCAACACCACATTCTTA  150

seq1  TAGTATTGCCAGTATGCTGATGTGGTAGCAGGCACTCTGTAGATGGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTGCCAGTATGCTGATGTGGTAGCAGGCACTCTGTAGATGGGGGG  200

seq1  TGGTGGTGATGAGCCCACTGTGGAAACTACAAGCTGTATCATGCTACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGATGAGCCCACTGTGGAAACTACAAGCTGTATCATGCTACAGT  250

seq1  GAGGATGGGCTTTAGGGTCAAAAGCAAAGTCAAGGTTACAGTGATGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGGGCTTTAGGGTCAAAAGCAAAGTCAAGGTTACAGTGATGGGAC  300

seq1  CAGGAACATGAGGGTGAGAGAAGAGCTTGGCATGAGACAGACAGACAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACATGAGGGTGAGAGAAGAGCTTGGCATGAGACAGACAGACAGAC  350

seq1  AGACTGACAAAGAGGAGAAAGAACCAGTGTTGGCAGGTTGGCAGGGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACAAAGAGGAGAAAGAACCAGTGTTGGCAGGTTGGCAGGGCCCT  400

seq1  GAAGCCCTGGAACACCAACATGAGTAGCACACTGTTGCCCTGCTATACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTGGAACACCAACATGAGTAGCACACTGTTGCCCTGCTATACAT  450

seq1  CCTTGTTTCTAATGTAGCCAATTGTAGCAAACTAAGAGAAGATGGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTCTAATGTAGCCAATTGTAGCAAACTAAGAGAAGATGGTTTCT  500

seq1  GAGAACCCCAGCAGGAGGGGTTAAACAAGGGCCACAGCATCCCAGAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCCCAGCAGGAGGGGTTAAACAAGGGCCACAGCATCCCAGAGGGA  550

seq1  CCCCTGTGCTCTCAAGGGAAAAGACACCTCTCACTAATTTGAGATGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGCTCTCAAGGGAAAAGACACCTCTCACTAATTTGAGATGGAGG  600

seq1  AAGGAAAGCAAAACTACTGTAGCGGGAAGCCACATGCGTCATTAGTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGCAAAACTACTGTAGCGGGAAGCCACATGCGTCATTAGTTTTA  650

seq1  GAATAATTTGTTGCTAAAGT-AAGGCATGTAACCACAAACAATCTCACTT  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATAATTTGTTGCTAAAGTAAAGGCATGTAACCACAAACAATCTCACTT  700

seq1  ACGTCTGCATAATTCAGCCAGCAAAACAAAAACACTGACCTCAGCAGGCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGCATAATTCAGCCAGCAAAACAAAAACACTGACCTCAGCAGGCG  750

seq1  TCTCTCAGCTCAGCACAGAACTCTAGGGAAAGCTTTCCCAGCAGAGTCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGCTCAGCACAGAACTCTAGGGAAAGCTTTCCCAGCAGAGTCTA  800

seq1  TGCTTCCTAAGGCTGGATCAGGCTGCCAGGGGACCTGGTACAGGGACCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTAAGGCTGGATCAGGCTGCCAGGGGACCTGGTACAGGGACCTT  850

seq1  CACCTCCGAGGTC-TCAGCC-TCCTCA-TTCCTCGT-GAGCGGGAGCACT  895
      ||||||||||||| |||||| |||||| |||||||| |||||||||||||
seq2  CACCTCCGAGGTCTTCAGCCTTCCTCATTTCCTCGTGGAGCGGGAGCACT  900

seq1  -GAGCTCACCATTTA-GTCTAG-TTCTAAATCCCCC-TGGGTTTCAT-AA  940
       |||||||||||||| |||||| ||||||||||||| |||||||||| ||
seq2  GGAGCTCACCATTTAGGTCTAGTTTCTAAATCCCCCTTGGGTTTCATAAA  950

seq1  ATATACA  947
      |||||||
seq2  ATATACA  957

seq1: chr11_118186100_118186633
seq2: B6Ng01-183J13.g_68_596 (reverse)

seq1  TGATGTCACTTCCCCCTCCAGGAGCCTGCAAAAACAATCCCAGTGTACCC  50
      |||| |||||||||||  ||| ||| |||||||||| |||||||||||||
seq2  TGATATCACTTCCCCCGGCAGAAGCGTGCAAAAACATTCCCAGTGTACCC  50

seq1  AGCAGAAGGGGATGGAAAAGACCTAGGTGGGTGTTGAGGTCACTGGTAAT  100
      |||||||||||||||||||||||||||||||||||||||||||    |  
seq2  AGCAGAAGGGGATGGAAAAGACCTAGGTGGGTGTTGAGGTCAC-CACACA  99

seq1  GAGCCAAAGATGATGGGCCATGTTTGCATTTGACAGTAACAACTGCCCAG  150
      || |||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GACCCAAAGATGATGGGCCATGTTTGCATTTAACAGTAAAAACTGCCCAG  149

seq1  GAACAACAACAGAGGCTGGGCTGTCCTGCTTCTGTCCTCTTTAGGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAACAGAGGCTGGGCTGTCCTGCTTCTGTCCTCTTTAGGAGGGA  199

seq1  AGGTGCTAGAAACTCTAGGTGATGGCCATGGCTAAAGGCAACTGGAAGAT  250
      |||||||||||||||||| ||||||||||||||||||||||||  |||||
seq2  AGGTGCTAGAAACTCTAGATGATGGCCATGGCTAAAGGCAACT-TAAGAT  248

seq1  TCAGAATACTCCACGGATAACAACTGTGGCAAAAGAGTCATGGTTCTCCC  300
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  TCAGAATACTCCACGGATAACAACTG-CACAAAAGAGTCATGGTTCTCCC  297

seq1  TCCGGAGGGGCTCCTGTCTGTCCCCTGGGTCACCAACACATGGTCTATTG  350
      ||||||||||||||| |||||||| ||||||||||||||| ||| |||||
seq2  TCCGGAGGGGCTCCTTTCTGTCCCTTGGGTCACCAACACACGGTGTATTG  347

seq1  AGCCCTGAAGACATGTTCATAAATCCAACAAGACTGTGTGTGTGTGTGTG  400
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGAAGACATGTTCATAAATCCAACAAGACTGTGTGTGTGTGTGTG  397

seq1  TGTGTGTGTGGGTGTGTGTGTGGGTGTGTGTGTGTAGAGAGAAAGGGAGG  450
       ||||||| |||||||||||| | ||||||||||||||||||||||||||
seq2  GGTGTGTGGGGGTGTGTGTGTAGATGTGTGTGTGTAGAGAGAAAGGGAGG  447

seq1  AGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  500
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGG--GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  495

seq1  AGAACACTAGGTAACTTTTACTAGCCTGGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  AGAACACTAGGTAACTTTTACTAGCCTGGAATTC  529