BAC Information

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BAC

Clone NameB6Ng01-185G02
Chromosome11 (Build37)
Map Location 68,434,641 - 68,541,347
singlet/doubletdoublet
Overlap geneMyh10
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42
Downstream geneNdel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185G02.bB6Ng01-185G02.g
ACCGA010511GA010512
length1,1181,167
definitionB6Ng01-185G02.b B6Ng01-185G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,540,229 - 68,541,347)(68,434,641 - 68,435,827)
sequence
gaattcctagagctgccgagactagtctgtaccaagcagtggtctaaatt
cactcagaacaggagtcaggtaggccctgaatgtaatagactttgtctct
aaaactgtgatttagacatgaagatggcttttctcgtcccagtcccttca
gtaccctgccccagggcattcctctggctaggcatgacgggtcaagcaga
tctttgtaatgaggccacggcctttatcattcctggtggacctcctgggc
accctggctgagcctctattttaccgtgcactcagagtctgctcacagtt
ttccttagcgttcaacaacaggatgcactttgttccggcgcaggagcctt
tttatatggttcccttggcttaggttcactttactgctatgcttttgaag
aaagctttttattgtaaatgaaacacagaacagctcacttgatagtaccc
aggcccacaaatggtcataaaatatcttctgtctcccttgtgaggtaaaa
tgcctaactcttataaatttttattgactaatgaaattagaactgtgttt
ctaaaagtgacttttgcctcaactcttccatcaaaaaattattttatttt
tcttttatgtaccttggtgttttgtctgtatgtgtatatgtgtgtgtatg
tgtgagtatcagatctcctggaactgtagttatagttatagtttgtgagc
tgtcatgtgggtgttgggaattgaacacaggtcctctggaagagcagtca
gtgctctgaactgctgaaccatctctccagtccatctcttccatatatat
atatatgtgcatgatactttgttgtggtcaagaatctccaatacacttcc
ctgatgtcacttctgccaccaaagcccacacagataaacgattaacactg
agataacgagaactcattatacactctcacaacagcccaagtcaccggga
aacctttcttagaggtgatactttgttctcactacactgtggtcagagat
gtggcctgtcatttcttttttttaggaactgagtttttttaagctgcttt
agattgctccagttccaactgcttctttgcctgacaggcagctggcttca
cacttagtttttaattcc
gaattctctcaaacaccagagaaggaaataacacccatatcagccaaatt
ccttcagagaattgagcaggaggaaacagactccagtttgtttcgcgaga
cgaatagtaactaatatcaaaatataacaaaggacacataaccaaagaaa
cagcctcatcacatttgtcacagtaattcagcgagatctgtttctgccac
atcatgtgttgagaacagatcttttttttttttttttttaaagatttatt
tatttattatatgtaaatacactgtagctgtcttcagacacaccagaaga
gggagtcagatcttgttacggatggttgtgagccaccatgtggttgctgg
gatttgaactctggaccttcggaagagcagtcgggtgctcttacccactg
agccatctcaccagcccgagaacagatcttaagagagaccccaccttaga
tcctttgggtgcagcctaatgaaattcccttctccttgggcttcactctt
agctgggcggagcagggggacctgcgcagcatctttggtacttgtctttt
gtttctcttctttactttttgttgcagaagtttgcgaatatccccaaaca
gagagaatagagccggaacctccgtgcccaccgtgctcacttctgctcat
cgcttccttctacagacagctctagcttgtccaacctccccatttgatgc
tcaactgtcttgtactctctagggaatctcagttttggcttccaaacaag
cagactatgtttgggtcttatgagtctttaaaggtccataagttcttcac
atcaaaggttccccgaggtttggttttagactctggataaagggctgagg
tgaacgttttacataaatcagacctggcatcctggttctctcagcatgtt
tcagtctccctaccccttgcctaccctgccctcaaccctgaactttccag
ccaagggctgggctgccttcctcaaaggctcttcccaatacatccagaac
atttggtctcctgctctcactcctcttctctgctcacacatctttcttct
ctctctccccatccttcttcctctcgctttcttgacttctcctgagccag
acctgcctgctggtgagcagcttcgataaacctgagttaatctaggtcta
tctgaattgtgaattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68540229_68541347
seq2: B6Ng01-185G02.b_44_1161 (reverse)

seq1  GGAATAAAAAACTAAGTGTGAAAGGCAGCTGCCTGTCAAGC-AAGAAGCA  49
      ||||| |||||||||||||| ||| ||||||||||||| || ||||||||
seq2  GGAATTAAAAACTAAGTGTG-AAGCCAGCTGCCTGTCAGGCAAAGAAGCA  49

seq1  GTTTGGAACTTGGAGCAAATTCTAAAGCAGGCCTAAAAAACCTCAGTTCC  99
      | ||||||| ||||||||  ||||||||| || ||||||| |||||||||
seq2  G-TTGGAAC-TGGAGCAA--TCTAAAGCA-GCTTAAAAAAACTCAGTTCC  94

seq1  T-AAAAAAAGAAATGACAGGCCACATCCTCTGACCACAGTGTAGTGAG-A  147
      | |||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  TAAAAAAAAGAAATGACAGGCCACAT-CTCTGACCACAGTGTAGTGAGAA  143

seq1  CAAAGTATCACCTCTAAG-AAGGTTTCCCGGTGGCTT-GGCTGTTGTGAG  195
      |||||||||||||||||| |||||||||||||| ||| ||||||||||||
seq2  CAAAGTATCACCTCTAAGAAAGGTTTCCCGGTGACTTGGGCTGTTGTGAG  193

seq1  AGTGTATAATGAGTTCTCGTTATCTCAGTGTTAATCGTTTATCTGTGTGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATAATGAGTTCTCGTTATCTCAGTGTTAATCGTTTATCTGTGTGG  243

seq1  GCTTTGGTGGCAGAAGTGACATCA-GGAAGTGTATTGGAGATTCTTGACC  294
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTTTGGTGGCAGAAGTGACATCAGGGAAGTGTATTGGAGATTCTTGACC  293

seq1  ACAACAAAGTATCATGCACATATATATATATATGGAAGAGATGGACTGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAGTATCATGCACATATATATATATATGGAAGAGATGGACTGGA  343

seq1  GAGATGGTTCAGCAGTTCAGAGCACTGACTGCTCTTCCAGAGGACCTGTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTTCAGCAGTTCAGAGCACTGACTGCTCTTCCAGAGGACCTGTG  393

seq1  TTCAATTCCCAACACCCACATGACAGCTCACAAACTATAACTATAACTAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCCAACACCCACATGACAGCTCACAAACTATAACTATAACTAC  443

seq1  AGTTCCAGGAGATCTGATACTCACACATACACACACATATACACATACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGAGATCTGATACTCACACATACACACACATATACACATACAG  493

seq1  ACAAAACACCAAGGTACATAAAAGAAAAATAAAATAATTTTTTGATGGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACCAAGGTACATAAAAGAAAAATAAAATAATTTTTTGATGGAA  543

seq1  GAGTTGAGGCAAAAGTCACTTTTAGAAACACAGTTCTAATTTCATTAGTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGGCAAAAGTCACTTTTAGAAACACAGTTCTAATTTCATTAGTC  593

seq1  AATAAAAATTTATAAGAGTTAGGCATTTTACCTCACAAGGGAGACAGAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATTTATAAGAGTTAGGCATTTTACCTCACAAGGGAGACAGAAG  643

seq1  ATATTTTATGACCATTTGTGGGCCTGGGTACTATCAAGTGAGCTGTTCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATGACCATTTGTGGGCCTGGGTACTATCAAGTGAGCTGTTCTG  693

seq1  TGTTTCATTTACAATAAAAAGCTTTCTTCAAAAGCATAGCAGTAAAGTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATTTACAATAAAAAGCTTTCTTCAAAAGCATAGCAGTAAAGTGA  743

seq1  ACCTAAGCCAAGGGAACCATATAAAAAGGCTCCTGCGCCGGAACAAAGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGCCAAGGGAACCATATAAAAAGGCTCCTGCGCCGGAACAAAGTG  793

seq1  CATCCTGTTGTTGAACGCTAAGGAAAACTGTGAGCAGACTCTGAGTGCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTTGTTGAACGCTAAGGAAAACTGTGAGCAGACTCTGAGTGCAC  843

seq1  GGTAAAATAGAGGCTCAGCCAGGGTGCCCAGGAGGTCCACCAGGAATGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAATAGAGGCTCAGCCAGGGTGCCCAGGAGGTCCACCAGGAATGAT  893

seq1  AAAGGCCGTGGCCTCATTACAAAGATCTGCTTGACCCGTCATGCCTAGCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCGTGGCCTCATTACAAAGATCTGCTTGACCCGTCATGCCTAGCC  943

seq1  AGAGGAATGCCCTGGGGCAGGGTACTGAAGGGACTGGGACGAGAAAAGCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATGCCCTGGGGCAGGGTACTGAAGGGACTGGGACGAGAAAAGCC  993

seq1  ATCTTCATGTCTAAATCACAGTTTTAGAGACAAAGTCTATTACATTCAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATGTCTAAATCACAGTTTTAGAGACAAAGTCTATTACATTCAGG  1043

seq1  GCCTACCTGACTCCTGTTCTGAGTGAATTTAGACCACTGCTTGGTACAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCTGACTCCTGTTCTGAGTGAATTTAGACCACTGCTTGGTACAGA  1093

seq1  CTAGTCTCGGCAGCTCTAGGAATTC  1119
      |||||||||||||||||||||||||
seq2  CTAGTCTCGGCAGCTCTAGGAATTC  1118

seq1: chr11_68434641_68435827
seq2: B6Ng01-185G02.g_66_1232

seq1  GAATTCTCTCAAACACCAGAGAAGGAAATAACACCCATATCAGCCAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAACACCAGAGAAGGAAATAACACCCATATCAGCCAAATT  50

seq1  CCTTCAGAGAATTGAGCAGGAGGAAACAGACTCCAGTTTGTTTCGCGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAGAATTGAGCAGGAGGAAACAGACTCCAGTTTGTTTCGCGAGA  100

seq1  CGAATAGTAACTAATATCAAAATATAACAAAGGACACATAACCAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATAGTAACTAATATCAAAATATAACAAAGGACACATAACCAAAGAAA  150

seq1  CAGCCTCATCACATTTGTCACAGTAATTCAGCGAGATCTGTTTCTGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCATCACATTTGTCACAGTAATTCAGCGAGATCTGTTTCTGCCAC  200

seq1  ATCATGTGTTGAGAACAGATCTTTTTTTTTTTTTTTTTTAAAGATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGTTGAGAACAGATCTTTTTTTTTTTTTTTTTTAAAGATTTATT  250

seq1  TATTTATTATATGTAAATACACTGTAGCTGTCTTCAGACACACCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATATGTAAATACACTGTAGCTGTCTTCAGACACACCAGAAGA  300

seq1  GGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGG  350

seq1  GATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTG  400

seq1  AGCCATCTCACCAGCCCGAGAACAGATCTTAAGAGAGACCCCACCTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCACCAGCCCGAGAACAGATCTTAAGAGAGACCCCACCTTAGA  450

seq1  TCCTTTGGGTGCAGCCTAATGAAATTCCCTTCTCCTTGGGCTTCACTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGGTGCAGCCTAATGAAATTCCCTTCTCCTTGGGCTTCACTCTT  500

seq1  AGCTGGGCGGAGCAGGGGGACCTGCGCAGCATCTTTGGTACTTGTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCGGAGCAGGGGGACCTGCGCAGCATCTTTGGTACTTGTCTTTT  550

seq1  GTTTCTCTTCTTTACTTTTTGTTGCAGAAGTTTGCGAATATCCCCAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTCTTTACTTTTTGTTGCAGAAGTTTGCGAATATCCCCAAACA  600

seq1  GAGAGAATAGAGCCGGAACCTCCGTGCCCACCGTGCTCACTTCTGCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATAGAGCCGGAACCTCCGTGCCCACCGTGCTCACTTCTGCTCAT  650

seq1  CGCTTCCTTCTACAGACAGCTCTAGCTTGTCCAACCTCCCCATTTGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCTTCTACAGACAGCTCTAGCTTGTCCAACCTCCCCATTTGATGC  700

seq1  TCAACTGTCTTGTACTCTCTAGGGAATCTCAGTTTTGGCTTCCAAACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGTCTTGTACTCTCTAGGGAATCTCAGTTTTGGCTTCCAAACAAG  750

seq1  CAGACTATGTTTGGGTCTTATGAGTCTTTAAAGGTCCATAAGTTCTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTATGTTTGGGTCTTATGAGTCTTTAAAGGTCCATAAGTTCTTCAC  800

seq1  ATCAAAGGTTCCCCGAGGTTTGGTTTTAGACTCTGGATAAGGGGCTGAGG  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCAAAGGTTCCCCGAGGTTTGGTTTTAGACTCTGGATAAAGGGCTGAGG  850

seq1  TGAACGTTTTACATAAATCAGACCTGGCATCCTGGTTCTCTCAGCATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACGTTTTACATAAATCAGACCTGGCATCCTGGTTCTCTCAGCATGTT  900

seq1  TCAGTCTCCCTACCCCCTTGCCTACCCTGCCCTCAACCCTGAACTTTCCA  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCCCTA-CCCCTTGCCTACCCTGCCCTCAACCCTGAACTTTCCA  949

seq1  GCCAAGGGGCTGGGCTGCCCTTCCTCAAAGGCTCTTCCCAATACAATCCA  1000
      ||||| ||||||||||| |||||||||||||||||||||||||| |||||
seq2  GCCAA-GGGCTGGGCTG-CCTTCCTCAAAGGCTCTTCCCAATAC-ATCCA  996

seq1  GACATTTTGGTCTCCCTGCTCTCACTCCTC-TCTCTGCTCACACATCCTT  1049
      ||   |||||||| |||||||||||||||| ||||||||||||||| |||
seq2  GAACATTTGGTCT-CCTGCTCTCACTCCTCTTCTCTGCTCACACAT-CTT  1044

seq1  TCTTTCTCTCTCTTCCCCAT-CTTCTTTCTCTCTCCCTTCTTTCCTGGCC  1098
      || ||||||||| ||||||| |||||| |||||      ||||| || | 
seq2  TC-TTCTCTCTC-TCCCCATCCTTCTTCCTCTC-----GCTTTCTTGACT  1087

seq1  TCCTTCCTTTGAAGCCAAAGAACTTGCCTGCTGGTGAGCAGCTTTCCAAT  1148
      ||  ||||    |||||    || ||||||||||||||||||||  | ||
seq2  TC--TCCT---GAGCCA---GACCTGCCTGCTGGTGAGCAGCTT--CGAT  1127

seq1  AAACCTGAGTTTAATCTA-GTCTAATCTGA--TTTGAATTGG  1187
      ||||||||| |||||||| |||| ||||||  | ||||||||
seq2  AAACCTGAG-TTAATCTAGGTCT-ATCTGAATTGTGAATTGG  1167