BAC Information

Click to search

BAC

Clone NameB6Ng01-186B14
Chromosome11 (Build37)
Map Location 71,949,952 - 71,950,997
singlet/doubletsinglet
Overlap genenone
Upstream geneNlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3
Downstream gene4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186B14.bB6Ng01-186B14.g
ACCGA011034GA011035
length1,060570
definitionB6Ng01-186B14.b B6Ng01-186B14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtaggacagtgaattgtcttagcctgtttcctctgcataaagt
ggggtgacacagtacaccccagagggtacatccagacttaacaaaagttc
acacagaaagccacacagactgcagttccaatatgggggagcactccaga
gttagaggtagaaaggtggtatccgtgccctccctgctagtagccagtgg
cctgagatggtgaacagctttggatccaggactttggggcttctgaactt
ccatgtctacaagatgtgttgctgtcccactctggagtccttgggactaa
agggttttttgagaggtgagacagtcatagctaaaactaagatggagaat
ctttgtcaaagcatgctagctagctgtcgtgagtgaaggcacgttgttcg
gtctgcacagaggaccctaggaaagcctggtttggtagatgaggcatcag
aaagcagggagaggtccatgagtaggcgatacagacttcctttcgctgag
gtgaagaactttgttgctgctagctctgtgcaaaagtttcgggaagactc
ttgcctgaggctgagcctttgatagactaaagagggagtgtaaggctgat
taacctggataggctgaaggagtcaaagcccagaaatgggtgtgtcccgt
agaggccccttgtgtgctttgtttctatggggcagtggatggggcactta
aagtcctggctggcctaggggtggaactgtctagtgcccagtgtgggtgc
ttggctgcagactgtgggagaaaaacaggcttcagggaaaggcccaacag
tcctctaaggagcctagccctcaccctaaccgttcagcagggaggaagtg
ggcctcgcctggaactgagctagggagccgactgctcttctccaggaccc
taccttctaggccccatctaaaacgactgactatcttcttgtggattccc
ctgactgcagtggggcagaaacaccatttaaattgttctcagggagcccg
ctaattagaactgtcagcaccttcttgtaagaaagttgtaagggggacta
tcttgctttc
cttttaatggtccgttttacccatcaagttgaccagactatgtggtgccc
agatatttggccaaatgttcttctaggtatttttgtcagagtgtgtttaa
aggaggtttcatgagtccaggctctccatagtcacagaacttatagaata
tatatatatatatatatatatatatatatatatatatatatatgagtggg
aagcctaagaaaccagtagttattcatcggtccacaaggctggatggctc
acctggtcttctgtatatgctggagtcatgaaaaagtaagatgtaatgcc
agttaaggaatggacttgccatgagaatgagggcaagcaggcagagagca
agagcttccttctcccctgtccttatacaggctcccggcagaagatgggg
cccggattaaagattgagttcccacctcgaggtttggatcagaggtgtgt
cttcctacctcaaaggtccagactagaagtggattcaaccacttccaacc
aagaaaaaaaaatctcacacaggtgtgtcctccatttctggattgtgttg
ttcatttcagaagtaatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71949952_71950997
seq2: B6Ng01-186B14.b_49_1108 (reverse)

seq1  GAAAGC-AGTGTGTCCCCCTAAC-ACTTTCTCAC-AGAA-GTGCTGACA-  45
      |||||| ||   |||||||| || ||||||| || |||| ||||||||| 
seq2  GAAAGCAAGATAGTCCCCCTTACAACTTTCTTACAAGAAGGTGCTGACAG  50

seq1  TTCTAATTAGCGGGCCTCCTGAGA--CATTTAAATTGTGGTTTCTG-CCC  92
      |||||||||||||||  |||||||   |||||||| || ||||||| |||
seq2  TTCTAATTAGCGGGCTCCCTGAGAACAATTTAAATGGT-GTTTCTGCCCC  99

seq1  ACTGCAGTCAGGGG-ATCCAC-AGGAGATGGTCAGTCGTTTTAGATGGGG  140
      |||||||||||||| |||||| || |||| ||||||||||||||||||||
seq2  ACTGCAGTCAGGGGAATCCACAAGAAGATAGTCAGTCGTTTTAGATGGGG  149

seq1  CCTAGAAGGTAGGGTCCTGGAG-AGAGCAGTCGGCTCCCTAGCTCAGTTC  189
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTAGAAGGTAGGGTCCTGGAGAAGAGCAGTCGGCTCCCTAGCTCAGTTC  199

seq1  CAGGCGAGG-CCACTTCCTCCCTGCTG-ACGGTTAGGGTGAGGGCTAGGC  237
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  CAGGCGAGGCCCACTTCCTCCCTGCTGAACGGTTAGGGTGAGGGCTAGGC  249

seq1  TCCTTAGAGGACTGTTGGGCC-TTCCCTGAAGCCTGTTTTTCTCCCACAG  286
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCTTAGAGGACTGTTGGGCCTTTCCCTGAAGCCTGTTTTTCTCCCACAG  299

seq1  TCTGCAGCCAAGCACCCACACTGGGCACTAGACAGTTCCACCCCTAGGCC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCCAAGCACCCACACTGGGCACTAGACAGTTCCACCCCTAGGCC  349

seq1  AGCCAGGAC-TTAAGTGCCCCATCCACTGCCCCATAGAAACAAAGCACAC  385
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGACTTTAAGTGCCCCATCCACTGCCCCATAGAAACAAAGCACAC  399

seq1  AAGGGGCCTCTACGGGACACACCCATTTCTGGGCTTTGACTCCTTCAGCC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCCTCTACGGGACACACCCATTTCTGGGCTTTGACTCCTTCAGCC  449

seq1  TATCCAGGTTAATCAGCCTTACACTCCCTCTTTAGTCTATCAAAGGCTCA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGGTTAATCAGCCTTACACTCCCTCTTTAGTCTATCAAAGGCTCA  499

seq1  GCCTCAGGCAAGAGTCTTCCCGAAACTTTTGCACAGAGCTAGCAGCAACA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGCAAGAGTCTTCCCGAAACTTTTGCACAGAGCTAGCAGCAACA  549

seq1  AAGTTCTTCACCTCAGCGAAAGGAAGTCTGTATCGCCTACTCATGGACCT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTCACCTCAGCGAAAGGAAGTCTGTATCGCCTACTCATGGACCT  599

seq1  CTCCCTGCTTTCTGATGCCTCATCTACCAAACCAGGCTTTCCTAGGGTCC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCTTTCTGATGCCTCATCTACCAAACCAGGCTTTCCTAGGGTCC  649

seq1  TCTGTGCAGACCGAACAACGTGCCTTCACTCACGACAGCTAGCTAGCATG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAGACCGAACAACGTGCCTTCACTCACGACAGCTAGCTAGCATG  699

seq1  CTTTGACAAAGATTCTCCATCTTAGTTTTAGCTATGACTGTCTCACCTCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAAAGATTCTCCATCTTAGTTTTAGCTATGACTGTCTCACCTCT  749

seq1  CAAAAAACCCTTTAGTCCCAAGGACTCCAGAGTGGGACAGCAACACATCT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCCTTTAGTCCCAAGGACTCCAGAGTGGGACAGCAACACATCT  799

seq1  TGTAGACATGGAAGTTCAGAAGCCCCAAAGTCCTGGATCCAAAGCTGTTC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACATGGAAGTTCAGAAGCCCCAAAGTCCTGGATCCAAAGCTGTTC  849

seq1  ACCATCTCAGGCCACTGGCTACTAGCAGGGAGGGCACGGATACCACCTTT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCAGGCCACTGGCTACTAGCAGGGAGGGCACGGATACCACCTTT  899

seq1  CTACCTCTAACTCTGGAGTGCTCCCCCATATTGGAACTGCAGTCTGTGTG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCTAACTCTGGAGTGCTCCCCCATATTGGAACTGCAGTCTGTGTG  949

seq1  GCTTTCTGTGTGAACTTTTGTTAAGTCTGGATGTACCCTCTGGGGTGTAC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGTGTGAACTTTTGTTAAGTCTGGATGTACCCTCTGGGGTGTAC  999

seq1  TGTGTCACCCCACTTTATGCAGAGGAAACAGGCTAAGACAATTCACTGTC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCACCCCACTTTATGCAGAGGAAACAGGCTAAGACAATTCACTGTC  1049

seq1  CTACAGAATTC  1046
      |||||||||||
seq2  CTACAGAATTC  1060