BAC Information

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BAC

Clone NameB6Ng01-188D07
Chromosome11 (Build37)
Map Location 119,913,840 - 120,049,491
singlet/doubletdoublet
Overlap geneAzi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384
Upstream geneCbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk
Downstream geneLOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188D07.bB6Ng01-188D07.g
ACCGA012572GA012573
length5491,122
definitionB6Ng01-188D07.b B6Ng01-188D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,913,840 - 119,914,394)(120,048,349 - 120,049,491)
sequence
ccaaggctctttcacatggcagcatgttgcagactgactccttccaactg
caaaagaaattccacagttgggcggggctgtattggtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtacgtggtgtgcgtgctcatgtgtgtgc
atgtgtctgttcatgaaagtatgcatgaaagcatatgtctgtgtgcacat
gtgtgtgtttttgagtgtgtgtgcacttggatatgcatgctcatacatat
gtgtgtgtgtgtgtatgtgtgtgtgtgcgtgcatgtgtgtgcatgtgtat
gtgcatgaaagtgtgcacgaaagtgtgtgtgtgtgcacatgtgtgtgtgt
gtgagctgctggtgcctggggttggaataaaaccttgtgaatatgaccga
ggcaattcaggtgcttctgagacagaatgaatatttatttccatgcacaa
ggtgactcagtagaggtggatggtcagggaaacttctggaatgtctttag
ccatctgacatgataagaagaggtgttgccttaaaactatgcagagagc
ctacgcgcgtctgcccgggcggcgcttggtgggtagtcccgcttccacca
aaactctgtgtttcctttctctcaaaataaaactcaacaagccataaagc
ttccgacgccggtggagaaggcgccgcggatttatggcccctgaattccc
tactctctaattatccttgtttttacttgacttatgggtagtgaccaata
aaatcattttccattttggattttttttttctctctggctaacatgaaaa
attcaagttgcgcccttctctcacccgcttggacaaaccttttttctgaa
cggggttggggataaaagaaccctgcctccatctttcgcctctactgagg
gctgtcctgtctcccaattccccgattaattgcatttaggggagagctgc
ctccaccccttctccctccactctagggcctttctgcggatctttcccta
gaaaccccgctgggctccggctctgaacagcaccggaggactgcaacgcc
cacccaggccctgctgcgggtctccggtggcctcagctcctgtcgggtaa
cctccctaggcctcccggaacgctcaccggagctcgagcctttggacgtt
cagggggctccaactttatgtggggatccccggaccgccagtgcctgcct
ccccaccccccaccctcatccctttgttcgcctctccggacaccgagttg
aaggcaggaaaaaaaaataattagatggaaatcaaagattagacggggtg
cgctggccgccagggcgaagccagcccaacactccgccggcgcctcataa
atctttttcgcagcctgacaaaagccacgtcctccagttccctgggaatc
tagaaacttatcgatctcctcgacgtcccccagacacccctctttgggat
cgaggacggagagtccttggtgaccccccccccacttatgtccagcccag
ggacgtcccagcccaatccggagttaattaattttcagagtggagaggtg
ttcagagggagagataccgactggggcccacccctcccaggaggcagcaa
tatcaaaaccgttgtaacaagaaattgttaggtgccacggtcttgctcag
ctgctggaaggatgcattctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_119913840_119914394
seq2: B6Ng01-188D07.b_49_603

seq1  GAATTCCCAAGGCTCTTTCACATGGCAGCATGTTGCAGACTGACTCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGGCTCTTTCACATGGCAGCATGTTGCAGACTGACTCCTTC  50

seq1  CAACTGCAAAAGAAATTCCACAGTTGGGCGGGGCTGTATTGGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCAAAAGAAATTCCACAGTTGGGCGGGGCTGTATTGGTGTGTGTG  100

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGGTGTGCGTGCTCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTGGTGTGCGTGCTCATGT  150

seq1  GTGTGCATGTGTCTGTTCATGAAAGTATGCATGAAAGCATATGTCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATGTGTCTGTTCATGAAAGTATGCATGAAAGCATATGTCTGTGT  200

seq1  GCACATGTGTGTGTTTTTGAGTGTGTGTGCACTTGGATATGCATGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGTGTGTGTTTTTGAGTGTGTGTGCACTTGGATATGCATGCTCAT  250

seq1  ACATATGTGTGTGTGTGTGTATGTGTGTGTGTGCGTGCATGTGTGTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGTGTGTGTGTGTGTATGTGTGTGTGTGCGTGCATGTGTGTGCAT  300

seq1  GTGTATGTGCATGAAAGTGTGCACGAAAGTGTGTGTGTGTGCACATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGCATGAAAGTGTGCACGAAAGTGTGTGTGTGTGCACATGTGT  350

seq1  GTGTGTGTGAGCTGCTGGTGCCTGGGGTTGGAATAAAACCCTGTGAATAT  400
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGTGTGTGAGCTGCTGGTGCCTGGGGTTGGAATAAAACCTTGTGAATAT  400

seq1  GACCGAGGCAATTCAGGTGCTTCTGAGACAGAAGGAAGAGTTACGTCCAT  450
      ||||||||||||||||||||||||||||||||| ||| | |||  |||||
seq2  GACCGAGGCAATTCAGGTGCTTCTGAGACAGAATGAATATTTATTTCCAT  450

seq1  GCACAAGGTGACACAGTAGAGGTGGATGGTCAGGGAAACTTCTGGAATGT  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCACAAGGTGACTCAGTAGAGGTGGATGGTCAGGGAAACTTCTGGAATGT  500

seq1  CTTTAGCCATCTGACATGATAAGAAGAGGTGTTGCCTCAAAACTATGCAG  550
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTTAGCCATCTGACATGATAAGAAGAGGTGTTGCCTTAAAACTATGCAG  550

seq1  AGAGC  555
      |||||
seq2  AGAGC  555

seq1: chr11_120048349_120049491
seq2: B6Ng01-188D07.g_71_1192 (reverse)

seq1  TCAGAATACATCCTTCCAGGCAGCTGGAGCAAGGGAAACGTGGCACCCTA  50
      ||||||| |||||||||| |||||| |||||||   | ||||||| ||||
seq2  TCAGAATGCATCCTTCCA-GCAGCT-GAGCAAG---ACCGTGGCA-CCTA  44

seq1  ACATTTCTTTGGTTTTACAAACGGGTTTTGGATATTTGCTGCCCTTCCTG  100
      ||| ||  |||   |||| |||||  ||| |||| ||||||||  |||||
seq2  ACAATTTCTTG---TTAC-AACGG--TTTTGATA-TTGCTGCC--TCCTG  85

seq1  GGAGGGGGTTGGGCCCAGGTCGGTATCTCTCCCTCTG-ACACCTTCTTCC  149
      |||||||  |||||||  ||||||||||||||||||| ||||||   |||
seq2  GGAGGGG--TGGGCCCCAGTCGGTATCTCTCCCTCTGAACACCT--CTCC  131

seq1  ACTTCTGAAAATTAATTAACTCCGGGATTGGGCTGGGACGT-CCTGGGCT  198
      || |||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  AC-TCTGAAAATTAATTAACTCC-GGATTGGGCTGGGACGTCCCTGGGCT  179

seq1  GGACATAAGTGGGGGGGGGGGTCACCAAGGACTCTCCGTCCTCGATCCCA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGACATAAGT-GGGGGGGGGGTCACCAAGGACTCTCCGTCCTCGATCCCA  228

seq1  AAGAGGGGTGTCTGGGGGACGTCGAGGAGATCGATAAGTTTCTAGATTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGGTGTCTGGGGGACGTCGAGGAGATCGATAAGTTTCTAGATTCC  278

seq1  CAGGGAACTGGAGGACGTGGCTTTTGTCAGGCCTGCGAAAAAGATTTATG  348
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGGGAACTGGAGGACGTGGCTTTTGTCAGG-CTGCGAAAAAGATTTATG  327

seq1  AGGCGCCGGCGGAGTGTTGGGCTGGCTTCGCCCTGGCGGCCAGCGCACCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCCGGCGGAGTGTTGGGCTGGCTTCGCCCTGGCGGCCAGCGCACCC  377

seq1  CGTCTAATCTTTGATTTCCATCTAATTATTTTTTTTTCCTGCCTTCAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAATCTTTGATTTCCATCTAATTATTTTTTTTTCCTGCCTTCAACT  427

seq1  CGGTGTCCGGAGAGGCGAACAAAGGGATGAGGGTGGGGGGTGGGGAGGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTCCGGAGAGGCGAACAAAGGGATGAGGGTGGGGGGTGGGGAGGCA  477

seq1  GGCACTGGCGGTCCGGGGATCCCCACATAAAGTTGGAGCCCCCTGAACGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGGCGGTCCGGGGATCCCCACATAAAGTTGGAGCCCCCTGAACGT  527

seq1  CCAAAGGCTCGAGCTCCGGTGAGCGTTCCGGGAGGCCTAGGGAGGTTACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGCTCGAGCTCCGGTGAGCGTTCCGGGAGGCCTAGGGAGGTTACC  577

seq1  CGACAGGAGCTGAGGCCACCGGAGACCCGCAGCAGGGCCTGGGTGGGCGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGGAGCTGAGGCCACCGGAGACCCGCAGCAGGGCCTGGGTGGGCGT  627

seq1  TGCAGTCCTCCGGTGCTGTTCAGAGCCGGAGCCCAGCGGGGTTTCTAGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCTCCGGTGCTGTTCAGAGCCGGAGCCCAGCGGGGTTTCTAGGG  677

seq1  AAAGATCCGCAGAAAGGCCCTAGAGTGGAGGGAGAAGGGGTGGAGGCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCGCAGAAAGGCCCTAGAGTGGAGGGAGAAGGGGTGGAGGCAGC  727

seq1  TCTCCCCTAAATGCAATTAATCGGGGAATTGGGAGACAGGACAGCCCTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTAAATGCAATTAATCGGGGAATTGGGAGACAGGACAGCCCTCA  777

seq1  GTAGAGGCGAAAGATGGAGGCAGGGTTCTTTTATCCCCAACCCCGTTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCGAAAGATGGAGGCAGGGTTCTTTTATCCCCAACCCCGTTCAG  827

seq1  AAAAAAGGTTTGTCCAAGCGGGTGAGAGAAGGGCGCAACTTGAATTTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTTTGTCCAAGCGGGTGAGAGAAGGGCGCAACTTGAATTTTTC  877

seq1  ATGTTAGCCAGAGAGAAAAAAAAAATCCAAAATGGAAAATGATTTTATTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCCAGAGAGAAAAAAAAAATCCAAAATGGAAAATGATTTTATTG  927

seq1  GTCACTACCCATAAGTCAAGTAAAAACAAGGATAATTAGAGAGTAGGGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTACCCATAAGTCAAGTAAAAACAAGGATAATTAGAGAGTAGGGAA  977

seq1  TTCAGGGGCCATAAATCCGCGGCGCCTTCTCCACCGGCGTCGGAAGCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGCCATAAATCCGCGGCGCCTTCTCCACCGGCGTCGGAAGCTTT  1027

seq1  ATGGCTTGTTGAGTTTTATTTTGAGAGAAAGGAAACACAGAGTTTTGGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGTTGAGTTTTATTTTGAGAGAAAGGAAACACAGAGTTTTGGTG  1077

seq1  GAAGCGGGACTACCCACCAAGCGCCGCCCGGGCAGACGCGCGTAG  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGGGACTACCCACCAAGCGCCGCCCGGGCAGACGCGCGTAG  1122