BAC Information

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BAC

Clone NameB6Ng01-188J23
Chromosome11 (Build37)2 (Build37)
Map Location 4,803,385 - 4,804,48429,906,141 - 29,906,616
singlet/doubletsingletsinglet
Overlap geneThoc5
Upstream geneSlc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1
Downstream geneNefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188J23.bB6Ng01-188J23.g
ACCGA012877GA012878
length1,117576
definitionB6Ng01-188J23.b B6Ng01-188J23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,803,385 - 4,804,484)(29,906,141 - 29,906,616)
sequence
gaattcttttctctaaataagcaaaatttaaagcctctagattttgctta
cttctagttcggccaaactggctttttcttgtcttacacatgtgcaggga
aaatgttttttttgttgttgttgttttaaagatttatttattattatatg
taagtgcactttagctgtcttcagatgcaccagaagagggcatcagatct
cattacagatggttgtgagccaccatgtggtttctgggatttgaactcag
gaccttcagaagagcagtcaatgctcttaaccgctgagccatctctccag
cccccaagggaaaatgttttaaagttatgtatagactcttaggtttatct
ttcctggtgacgtgtcttggtttcatcatgatggcataagcccaggctgc
agggactctgagtctcttagctgatacttctgttcagctaggaaaggcct
gcaaggtcattgagcatcctcctccagccttcagctgatttgtggataag
tagggtgagcaacatgggcaaatgactctgtggtaagtcactaataacta
tcatcacactgaaatgcctgtcactgagcattgactgagattgaattcca
ggattttcagtagccataggctggggctgcatagacaatggaaccattgc
ccctgctaatccacagcttggggttctgaaaatggctgcctgagaacttc
attttgcttataggtcaaagcatgaagaaattgatctggtcagcttagag
gaattttattcagaggctccaccaagcatcagcaaggccgagatcaccat
gggagaccctcaccaacaaacattggcacgtttgggactgggagctggag
cagcggaaaaggtggtgaccttcctgacctggttaaccacacagtgacag
tccttggtcatgacccaggattagccatttttcttccaggaccaagtctt
cacttttctttattaatttcaccctgggattatttcaaccttgactgacc
tctttcagggtggggctgatgactgcttatgttaccagtagaagctggga
ggtgatgtattgtggcctcagtgggtgtatatggtgtgcccaccatgccc
aaggactcttggactcc
gaattccagttccagcaaatccaacgcctttttctggcctccctgagcac
gcgcagcacacatgcacacaaataaggaagaaagagctgggcgtggtggt
gcacgcctttaaccccagcacttgggagacagaggcaggaggatttctga
gttccaggccagcctggtctaaagagtgagttccaggacagccagggcta
cacagagaaccctgtttcaaatcaaaaaaaaaaaaaaaaaaaaaaagaca
tggaagaggaaagaagttacaaaatgaagagaagtgaagacaaatgaata
gaaagtaaccaacaaccacctaaaagaaataggtaaaaagtataaaaata
gttccagagaagagcagttgcccagaaatactggaatataggcccattta
agatccactactgaagccaggcgtggtagcgcaggcctttaatcccagca
cagagccagaggcaggcggatcgaaaaacaaaaacaaaaaaccaccaaga
tccacttagggaggctggagatgcggaggcgcaggggttaagagcacttg
ctgcttttgcagaggggccaatttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4803385_4804484
seq2: B6Ng01-188J23.b_45_1160

seq1  GAATTCTTTTCTCTAAATAAGCAAAATTTAAAGCCTCTAGATTTTGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTCTAAATAAGCAAAATTTAAAGCCTCTAGATTTTGCTTA  50

seq1  CTTCTAGTTCGGCCAAACTGGCTTTTTCTTGTCTTACACATGTGCAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGTTCGGCCAAACTGGCTTTTTCTTGTCTTACACATGTGCAGGGA  100

seq1  AAATGTTTTTTTTGTTGTTGTTGTTTTAAAGATTTATTTATTATTATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTTTTTGTTGTTGTTGTTTTAAAGATTTATTTATTATTATATG  150

seq1  TAAGTGCACTTTAGCTGTCTTCAGATGCACCAGAAGAGGGCATCAGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCACTTTAGCTGTCTTCAGATGCACCAGAAGAGGGCATCAGATCT  200

seq1  CATTACAGATGGTTGTGAGCCACCATGTGGTTTCTGGGATTTGAACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGATGGTTGTGAGCCACCATGTGGTTTCTGGGATTTGAACTCAG  250

seq1  GACCTTCAGAAGAGCAGTCAATGCTCTTAACCGCTGAGCCATCTCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCAGAAGAGCAGTCAATGCTCTTAACCGCTGAGCCATCTCTCCAG  300

seq1  CCCCCAAGGGAAAATGTTTTAAAGTTATGTATAGACTCTTAGGTTTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAGGGAAAATGTTTTAAAGTTATGTATAGACTCTTAGGTTTATCT  350

seq1  TTCCTGGTGACGTGTCTTGGTTTCATCATGATGGCATAAGCCCAGGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTGACGTGTCTTGGTTTCATCATGATGGCATAAGCCCAGGCTGC  400

seq1  AGGGACTCTGAGTCTCTTAGCTGATACTTCTGTTCAGCTAGGAAAGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCTGAGTCTCTTAGCTGATACTTCTGTTCAGCTAGGAAAGGCCT  450

seq1  GCAAGGTCATTGAGCATCCTCCTCCAGCCTTCAGCTGATTTGTGGATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCATTGAGCATCCTCCTCCAGCCTTCAGCTGATTTGTGGATAAG  500

seq1  TAGGGTGAGCAACATGGGCAAATGACTCTGTGGTAAGTCACTAATAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGAGCAACATGGGCAAATGACTCTGTGGTAAGTCACTAATAACTA  550

seq1  TCATCACACTGAAATGCCTGTCACTGAGCATTGACTGAGATTGAATTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACACTGAAATGCCTGTCACTGAGCATTGACTGAGATTGAATTCCA  600

seq1  GGATTTTCAGTAGCCATAGGCTGGGGCTGCATAGACAATGGAACCATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCAGTAGCCATAGGCTGGGGCTGCATAGACAATGGAACCATTGC  650

seq1  CCCTGCTAATCCACAGCTTGGGGTTCTGAAAATGGCTGCCTGAGAACTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTAATCCACAGCTTGGGGTTCTGAAAATGGCTGCCTGAGAACTTC  700

seq1  ATTTTGCTTATAGGTCAAAGCATGAAGAAATTGATCTGGTCAGCTTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTATAGGTCAAAGCATGAAGAAATTGATCTGGTCAGCTTAGAG  750

seq1  GAATTTTATTCAGAGGCTCCACCAAGCATCAGCAAGGCCGAGATCACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTATTCAGAGGCTCCACCAAGCATCAGCAAGGCCGAGATCACCAT  800

seq1  GGGAGACCCTCACCAACAAACATTGGCACGTTT-GGACTGGGAGCTGGAG  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGAGACCCTCACCAACAAACATTGGCACGTTTGGGACTGGGAGCTGGAG  850

seq1  CAGCGGAAAAGGTGGTGACCTTCCTGACCTGGTTAACCACACAGTGACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGAAAAGGTGGTGACCTTCCTGACCTGGTTAACCACACAGTGACAG  900

seq1  TCCTTGGTCATGACCCAGGATTAGCCATTTT--CTCCAGGACCAAGTC-T  946
      |||||||||||||||||||||||||||||||   |||||||||||||| |
seq2  TCCTTGGTCATGACCCAGGATTAGCCATTTTTCTTCCAGGACCAAGTCTT  950

seq1  CACTTT--CTTATTAA-TTCACCCT-GGATTA-TTCAAACCTGACTGACC  991
      ||||||   ||||||| |||||||| |||||| ||||| | |||||||||
seq2  CACTTTTCTTTATTAATTTCACCCTGGGATTATTTCAACCTTGACTGACC  1000

seq1  TCTTTCAGGGT-GGGCTGATGACTGCTAAGGTTACCAGTAGGAAGCT-GG  1039
      ||||||||||| ||||||||||||||| | |||||||||| |||||| ||
seq2  TCTTTCAGGGTGGGGCTGATGACTGCTTATGTTACCAGTA-GAAGCTGGG  1049

seq1  AGGTGATGGTATGTGG-CTCAGTGGTGGTAT---GTGTGCCCACCATGCC  1085
      ||||||||   ||||| ||||||||  ||||   ||||||||||||||||
seq2  AGGTGATGTATTGTGGCCTCAGTGGGTGTATATGGTGTGCCCACCATGCC  1099

seq1  CAAGG-CTCTT-GACTC  1100
      ||||| ||||| |||||
seq2  CAAGGACTCTTGGACTC  1116

seq1: chr2_29906141_29906616
seq2: B6Ng01-188J23.g_162_560

seq1  GGTGGTGGCACATGCCTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGCA  50
      |||||||   || ||||||||  |||||||||||||| ||||||||||  
seq2  GGTGGTG---CACGCCTTTAACCCCAGCACTTGGGAGACAGAGGCAGGAG  47

seq1  GATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  100
      ||||||||||||| |||||||||||||||| | |||||||||||||||||
seq2  GATTTCTGAGTTCCAGGCCAGCCTGGTCTAAAGAGTGAGTTCCAGGACAG  97

seq1  CCAAGGCTACACAGAGAAACCCTGTCT----TGAAAAAAAAAAAAAAAAA  146
      ||| |||||||||||| |||||||| |    | |||||||||||||||||
seq2  CCAGGGCTACACAGAG-AACCCTGTTTCAAATCAAAAAAAAAAAAAAAAA  146

seq1  AAAAAA----------AGCAAAAAA---ACAAAAAAAAGA------AAG-  176
      ||||||          || ||| ||   ||||||  ||||      ||| 
seq2  AAAAAAGACATGGAAGAGGAAAGAAGTTACAAAATGAAGAGAAGTGAAGA  196

seq1  --AAAGAA-AGAAAGAA---AACCAGCTCAATAAAGATAAGGCTAGCCCT  220
        || ||| |||||| |   ||| | | |   ||||| |  | ||     
seq2  CAAATGAATAGAAAGTAACCAACAACCACCTAAAAGAAATAGGTA-----  241

seq1  GAGAATATAAATCAGCCTAGTGTCTGGGGGACTGGATTCTACCCTAGCAG  270
       | | ||||||      |||| ||  | | |  | | | | ||    |||
seq2  AAAAGTATAAA----AATAGT-TCCAGAGAAGAGCAGT-TGCC----CAG  281

seq1  AAGTGAGATGTTTGTATAT------ATTGAAGATAGCTTGAAAATGGAAG  314
      ||     ||  | | ||||      ||| ||||    |  |  |  ||||
seq2  AA-----ATACTGGAATATAGGCCCATTTAAGA----TCCACTACTGAAG  322

seq1  GAATGGCTGGGAAGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGGAGG  364
        | |||      ||||| ||||| |||||||||||||||||    ||| 
seq2  CCA-GGC------GTGGTAGCGCAGGCCTTTAATCCCAGCAC---AGAGC  362

seq1  CAGAGGCAGGCGAATTTCTGAGTTCGAGGCCAGCCTGGTCAACAGAGTGA  414
      ||||||||||||         | |||                        
seq2  CAGAGGCAGGCG---------GATCG------------------------  379

seq1  GTTCCAGGACAGCTAGGGCTATGCAGAGAAAAAAACAAAAAAAAAACAAA  464
                                               |||||| ||
seq2  -----------------------------------------AAAAAC-AA  387

seq1  AAACAAAAAACC  476
      ||||||||||||
seq2  AAACAAAAAACC  399