BAC Information

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BAC

Clone NameB6Ng01-192D12
Chromosome11 (Build37)
Map Location 112,979,120 - 113,165,593
singlet/doubletdoublet
Overlap gene2610035D17Rik, Slc39a11
Upstream geneLOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
Downstream geneSstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192D12.bB6Ng01-192D12.g
ACCGA015512GA015513
length334929
definitionB6Ng01-192D12.b B6Ng01-192D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,165,260 - 113,165,593)(112,979,120 - 112,980,039)
sequence
ccctcgttacccctttaccatctttgcacaagtcctttatacgcaacggg
aggaaccggggccacatctgtcttcgtatctgtatccccagatgcagagg
agccctgtgggttaaacgccctcactatctaacactaagtctatgtatta
ggaagtgtgtttgttccctgaagccccaaccacgcaaggggcactggcag
tctctaggttgaagtgtgtcctggtcttagctccttcctcttggactaag
ccattttcactttcgcatcatggtgagaatgatgccttttgcaaaagtca
aatgagacagtgaatgaaagaagggagggaggga
gaattccaggacagctaggaagaagtcataaagagaccctacctcaaaaa
ccagtctcataggaggataagcctgggtactgtggcatagtcaggatagc
cattgttggggcaggatctggaaaacctgggtagttatgggatcctcaac
agaggctatattgagtgagattaagtgtttaagaattaatgccttcggtg
ttaagattaaactaaagactcagaaggctcttggggtggtgaaggggacc
ccagcctgtacctcgggtgtcccagttacttttctatgttgtaataaaac
accaggacaaaggcaacttatagaagaaagagtttatttgggcttacagt
tccaaagagataagggtccatgtggcaggcaatggttatagcaggcagca
gaaatggcagtagaaaacggccaagagctcacagcatctcaaatcacaaa
caggaaacagatggaatgagattgggaaaggtgtagggttttcgaaccat
caaagtccaaccacagtgacacgcctcctccaacaaggccacacctccta
ctccttcacaaacagttttaccaactggggatcaatcactcaaatatatg
agcctacaggggccatttctcattcaaaccaccatatacaccaagatgtt
ggccattttccctgtttatatttattgtactcatgtttatacttcttctg
cataaacagtggcgggcatcatcacaggcgctttactatgaataaggtgg
tgagccccaaatgccataccacacattcacatttaaatatacatacgcat
acatctacacacagattaatctaacctaagatcaatgtttgtcgaatatc
acttcaattcaattactgtctcgggtggttgagcttgagtacatacctct
aaataatcttcgtcgaaaaagatattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_113165260_113165593
seq2: B6Ng01-192D12.b_51_384 (reverse)

seq1  TCCCTCCCTCCCTTCTTTCATTCACTGTCTCATTTGACTTTTGCAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTTCTTTCATTCACTGTCTCATTTGACTTTTGCAAAAGG  50

seq1  CATCATTCTCACCATGATGCGAAAGTGAAAATGGCTTAGTCCAAGAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCTCACCATGATGCGAAAGTGAAAATGGCTTAGTCCAAGAGGAA  100

seq1  GGAGCTAAGACCAGGACACACTTCAACCTAGAGACTGCCAGTGCCCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAAGACCAGGACACACTTCAACCTAGAGACTGCCAGTGCCCCTTG  150

seq1  CGTGGTTGGGGCTTCAGGGAACAAACACACTTCCTAATACATAGACTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTTGGGGCTTCAGGGAACAAACACACTTCCTAATACATAGACTTAG  200

seq1  TGTTAGATAGTGAGGGCGTTTAACCCACAGGGCTCCTCTGCATCTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGATAGTGAGGGCGTTTAACCCACAGGGCTCCTCTGCATCTGGGGA  250

seq1  TACAGATACGAAGACAGATGTGGCCCCGGTTCCTCCCGTTGCGTATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATACGAAGACAGATGTGGCCCCGGTTCCTCCCGTTGCGTATAAAG  300

seq1  GACTTGTGCAAAGATGGTAAAGGGGTAACGAGGG  334
      ||||||||||||||||||||||||||||||||||
seq2  GACTTGTGCAAAGATGGTAAAGGGGTAACGAGGG  334

seq1: chr11_112979120_112980039
seq2: B6Ng01-192D12.g_64_992

seq1  GAATTCCAGGACAGCTAGGAAGAAGTCATAAAGAGACCCTACCTCAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCTAGGAAGAAGTCATAAAGAGACCCTACCTCAAAAA  50

seq1  CCAGTCTCATAGGAGGATAAGCCTGGGTACTGTGGCATAGTCAGGATAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCATAGGAGGATAAGCCTGGGTACTGTGGCATAGTCAGGATAGC  100

seq1  CATTGTTGGGGCAGGATCTGGAAAACCTGGGTAGTTATGGGATCCTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTGGGGCAGGATCTGGAAAACCTGGGTAGTTATGGGATCCTCAAC  150

seq1  AGAGGCTATATTGAGTGAGATTAAGTGTTTAAGAATTAATGCCTTCGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTATATTGAGTGAGATTAAGTGTTTAAGAATTAATGCCTTCGGTG  200

seq1  TTAAGATTAAACTAAAGACTCAGAAGGCTCTTGGGGTGGTGAAGGGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTAAACTAAAGACTCAGAAGGCTCTTGGGGTGGTGAAGGGGACC  250

seq1  CCAGCCTGTACCTCGGGTGTCCCAGTTACTTTTCTATGTTGTAATAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGTACCTCGGGTGTCCCAGTTACTTTTCTATGTTGTAATAAAAC  300

seq1  ACCAGGACAAAGGCAACTTATAGAAGAAAGAGTTTATTTGGGCTTACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGACAAAGGCAACTTATAGAAGAAAGAGTTTATTTGGGCTTACAGT  350

seq1  TCCAAAGAGATAAGGGTCCATGTGGCAGGCAATGGTTATAGCAGGCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAGATAAGGGTCCATGTGGCAGGCAATGGTTATAGCAGGCAGCA  400

seq1  GAAATGGCAGTAGAAAACGGCCAAGAGCTCACAGCATCTCAAATCACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCAGTAGAAAACGGCCAAGAGCTCACAGCATCTCAAATCACAAA  450

seq1  CAGGAAACAGATGGAATGAGATTGGGAAAGGTGTAGGGTTTTCGAACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACAGATGGAATGAGATTGGGAAAGGTGTAGGGTTTTCGAACCAT  500

seq1  CAAAGTCCAACCACAGTGACACGCCTCCTCCAACAAGGCCACACCTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCCAACCACAGTGACACGCCTCCTCCAACAAGGCCACACCTCCTA  550

seq1  CTCCTTCACAAACAGTTTTACCAACTGGGGATCAATCACTCAAATATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCACAAACAGTTTTACCAACTGGGGATCAATCACTCAAATATATG  600

seq1  AGCCTACAGGGGCCATTTCTCATTCAAACCACCATATACACCAAGATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACAGGGGCCATTTCTCATTCAAACCACCATATACACCAAGATGTT  650

seq1  GGCCATTTTCCCTGTTTATATTTATTGTACTCATGTTTATACTTCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTTTCCCTGTTTATATTTATTGTACTCATGTTTATACTTCTTCTG  700

seq1  CATAAACAGTGGCGGGCATCATCACAGGCGCTTTACTATGAATAAGGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACAGTGGCGGGCATCATCACAGGCGCTTTACTATGAATAAGGTGG  750

seq1  TGAGCCCCAAATGCCATACCACACATTCACATTTAAATATACATACGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCAAATGCCATACCACACATTCACATTTAAATATACATACGCAT  800

seq1  ACATCTACACACAGA-TAATCTAACCTAAGATC-ATGTTTGTCG-ATATC  847
      ||||||||||||||| ||||||||||||||||| |||||||||| |||||
seq2  ACATCTACACACAGATTAATCTAACCTAAGATCAATGTTTGTCGAATATC  850

seq1  ACTTCAATTCAATTACTGTCTC-GGTGGTTGA-CTTGAGTACATAC--CT  893
      |||||||||||||||||||||| ||||||||| |||||||||||||  ||
seq2  ACTTCAATTCAATTACTGTCTCGGGTGGTTGAGCTTGAGTACATACCTCT  900

seq1  TAATATTC-TCGT-GAAAAAGATATTTTT  920
       |||| || |||| |||||||||||||||
seq2  AAATAATCTTCGTCGAAAAAGATATTTTT  929