BAC Information

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BAC

Clone NameB6Ng01-192J04
Chromosome11 (Build37)
Map Location 120,084,934 - 120,225,765
singlet/doubletdoublet
Overlap geneLOC100043389, Bahcc1, Actg1, Fscn2
Upstream geneTbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384
Downstream gene2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192J04.bB6Ng01-192J04.g
ACCGA015780GA015781
length1,113447
definitionB6Ng01-192J04.b B6Ng01-192J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,084,934 - 120,086,032)(120,225,313 - 120,225,765)
sequence
gaattctcaggaggcatgcctgctccacactctaggcagaccagactagg
tttctgttgccagcacagaaacctgaagggatgcggagtagctcggctga
gccttaggcagaccccttactaagtgcttttcacctccgctggcttcagt
cactttaacagaaaacctgactttagcaacattgtttcagaccttggact
tcaagctggattttcatctcccctgcctgccccaggcacatggctgggga
aactgtacaaccaatatctgtttaagagtaaaccaaagccaaaaagccaa
aaagccggcagttcttgttctgaggcccactgattctctggtcccgtggt
caccacggggtgtgggtttggacaaagccgtgttcatcgaagccctgggc
ctgatgacagtggcacaaggaccccattctctactgtccccagctgtgtc
ccctcccccagtgggcctgacttcagaagcgctgggccagacatcctggg
agcccccacccttggggccaggctcagctgcatgcactcagggaaattca
caagggagcttgctgggaataggcctgtgtgtgtgtgtgtgtgtgcgtgc
gtgtgtgtctgtgaataggtgtgtgtgtctgtgtgtacgcgcaagtgtgt
cctgcatgaacggtacagcagctgcagtaggctccttctgtccacagcgg
gaagtcgcctgcatttttacaactgatttttgaacctaagagtcgaggtt
tccttctagcctgttaaacgtaaaccttgttggtttcaggccaaccctga
ccctttggaatctggcttccagatttcccactgtacattagctatgccct
ccagattcagacagggaagaccagccctgctgggctttatcccagtgact
gagtgcctgagtgcagccttcagaaggggctaacccaggggggagtggac
tttctggctcattcttcctttgggttgtgttggtcctaaaacaactaatg
ctgggtctcaagggcccccacattttctggtcttgctcctcgaggcaaaa
aggtggaattccattgaatgtcatatccaaagaacccttgtcttgttttg
gtggaagaccagg
attatggctggcctcagagatccacctgtccttgccttgctgggactaaa
ggtgtgtaccactgtttccagctagttattattattttgtttgtttggtt
ttttttgtttttgtttttcgagacagggtttctctgtatagccctggctg
tcctggaactcactttgtagaccaggctggcctcgaactcagaaatccgt
ctgcctctgcttcctgagttctgggattaaaggcatgcgccaccaccacc
cagcccagctagttattattgttttttattgtttaagagaccgaaagggg
ctgcagagatggctagggtttaagagcacttactgttcttgcagaggacc
tgagttttgttcccagcacccttaccaggcaggctccagaggagccaatg
tcctcttctagcttctgcaggcacctgtactcatgtgcctgtaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120084934_120086032
seq2: B6Ng01-192J04.b_46_1158

seq1  GAATTCTCAGGAGGCATGCCTGCTCCACACTCTAGGCAGACCAGACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGAGGCATGCCTGCTCCACACTCTAGGCAGACCAGACTAGG  50

seq1  TTTCTGTTGCCAGCACAGAAACCTGAAGGGATGCGGAGTAGCTCGGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTGCCAGCACAGAAACCTGAAGGGATGCGGAGTAGCTCGGCTGA  100

seq1  GCCTTAGGCAGACCCCTTACTAAGTGCTTTTCACCTCCGCTGGCTTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGGCAGACCCCTTACTAAGTGCTTTTCACCTCCGCTGGCTTCAGT  150

seq1  CACTTTAACAGAAAACCTGACTTTAGCAACATTGTTTCAGACCTTGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAACAGAAAACCTGACTTTAGCAACATTGTTTCAGACCTTGGACT  200

seq1  TCAAGCTGGATTTTCATCTCCCCTGCCTGCCCCAGGCACATGGCTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGGATTTTCATCTCCCCTGCCTGCCCCAGGCACATGGCTGGGGA  250

seq1  AACTGTACAACCAATATCTGTTTAAGAGTAAACCAAAGCCAAAAAGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACAACCAATATCTGTTTAAGAGTAAACCAAAGCCAAAAAGCCAA  300

seq1  AAAGCCGGCAGTTCTTGTTCTGAGGCCCACTGATTCTCTGGTCCCGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCGGCAGTTCTTGTTCTGAGGCCCACTGATTCTCTGGTCCCGTGGT  350

seq1  CACCACGGGGTGTGGGTTTGGACAAAGCCGTGTTCATCGAAGCCCTGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGGGGTGTGGGTTTGGACAAAGCCGTGTTCATCGAAGCCCTGGGC  400

seq1  CTGATGACAGTGGCACAAGGACCCCATTCTCTACTGTCCCCAGCTGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACAGTGGCACAAGGACCCCATTCTCTACTGTCCCCAGCTGTGTC  450

seq1  CCCTCCCCCAGTGGGCCTGACTTCAGAAGCGCTGGGCCAGACATCCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCAGTGGGCCTGACTTCAGAAGCGCTGGGCCAGACATCCTGGG  500

seq1  AGCCCCCACCCTTGGGGCCAGGCTCAGCTGCATGCACTCAGGGAAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCACCCTTGGGGCCAGGCTCAGCTGCATGCACTCAGGGAAATTCA  550

seq1  CAAGGGAGCTTGCTGGGAATAGGCCTGTGTGTGTGTGTGTGTGTGCGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGCTTGCTGGGAATAGGCCTGTGTGTGTGTGTGTGTGTGCGTGC  600

seq1  GTGTGTGTCTGTGAATAGGTGTGTGTGTCTGTGTGTACGCGCAAGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCTGTGAATAGGTGTGTGTGTCTGTGTGTACGCGCAAGTGTGT  650

seq1  CCTGCATGAACGGTACAGCAGCTGCAGTAGGCTCCTTCTGTCCACAGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATGAACGGTACAGCAGCTGCAGTAGGCTCCTTCTGTCCACAGCGG  700

seq1  GAAGTCGCCTGCATTTTTACAACTGATTTTTGAACCTAAGAGTCGAGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGCCTGCATTTTTACAACTGATTTTTGAACCTAAGAGTCGAGGTT  750

seq1  TCCTTCTAGCCTGTTAAACGT-AACCTTGTTGGTTTCAGGCCAA-CCTGA  798
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  TCCTTCTAGCCTGTTAAACGTAAACCTTGTTGGTTTCAGGCCAACCCTGA  800

seq1  CCCTTTGGAATCTGGCTTCCAGA-TTCCCACTGTACATTAGCTATG-CCT  846
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  CCCTTTGGAATCTGGCTTCCAGATTTCCCACTGTACATTAGCTATGCCCT  850

seq1  CCAGATTCAGACAGGG-AGACCAGCCCTGCTGGGCTTTATCCCAGTGACT  895
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAGATTCAGACAGGGAAGACCAGCCCTGCTGGGCTTTATCCCAGTGACT  900

seq1  GAGTGCCTGAGTGCAGCCTTCAG-AGGGGCTAACCCAGGGGGGAGTGGAC  944
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGTGCCTGAGTGCAGCCTTCAGAAGGGGCTAACCCAGGGGGGAGTGGAC  950

seq1  -TTCTGGCTCATTCTTCCTT--GGGTGTGGTGGT-CTAAAACAACTAATG  990
       |||||||||||||||||||  || |||| |||| |||||||||||||||
seq2  TTTCTGGCTCATTCTTCCTTTGGGTTGTGTTGGTCCTAAAACAACTAATG  1000

seq1  CT-GGTCTCAAGGGCCCCCACA-TTTCTGGTCCTGGCTCTCGAGGC-AAA  1037
      || ||||||||||||||||||| ||||||||| ||   |||||||| |||
seq2  CTGGGTCTCAAGGGCCCCCACATTTTCTGGTCTTGCTCCTCGAGGCAAAA  1050

seq1  AGGTGGAAATCCA-TGAGTGTCAGGATCCAAAGA--CCTTGTCCTGTTTT  1084
      |||||||| |||| ||| |||||  |||||||||  ||||||| ||||||
seq2  AGGTGGAATTCCATTGAATGTCA-TATCCAAAGAACCCTTGTCTTGTTTT  1099

seq1  -GTGGAAGAACCCAGG  1099
       ||||||||  |||||
seq2  GGTGGAAGA--CCAGG  1113

seq1: chr11_120225313_120225765
seq2: B6Ng01-192J04.g_67_519 (reverse)

seq1  AGGGTACAGGCACATGAGTACAGGTGCCTGCAGAAGCTAGAAGAGGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACAGGCACATGAGTACAGGTGCCTGCAGAAGCTAGAAGAGGACAT  50

seq1  TGGCTCCTCTGGAGCCTGCCTGGTAAGGGTGCTGGGAACAAAACTCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTCTGGAGCCTGCCTGGTAAGGGTGCTGGGAACAAAACTCAGGT  100

seq1  CCTCTGCAAGAACAGTAAGTGCTCTTAAACCCTAGCCATCTCTGCAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAAGAACAGTAAGTGCTCTTAAACCCTAGCCATCTCTGCAGCCC  150

seq1  CTTTCGGTCTCTTAAACAATAAAAAACAATAATAACTAGCTGGGCTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGGTCTCTTAAACAATAAAAAACAATAATAACTAGCTGGGCTGGGT  200

seq1  GGTGGTGGCGCATGCCTTTAATCCCAGAACTCAGGAAGCAGAGGCAGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGCGCATGCCTTTAATCCCAGAACTCAGGAAGCAGAGGCAGACG  250

seq1  GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAG  300

seq1  CCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAAACAAAAAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAAACAAAAAAAAC  350

seq1  CAAACAAACAAAATAATAATAACTAGCTGGAAACAGTGGTACACACCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAATAATAATAACTAGCTGGAAACAGTGGTACACACCTTT  400

seq1  AGTCCCAGCAAGGCAAGGACAGGTGGATCTCTGAGGCCAGCCATAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGCAAGGCAAGGACAGGTGGATCTCTGAGGCCAGCCATAATGAA  450

seq1  TTC  453
      |||
seq2  TTC  453