BAC Information

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BAC

Clone NameB6Ng01-194A03
Chromosome11 (Build37)
Map Location 28,245,500 - 28,246,664
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042377, EG626571
Downstream geneCcdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194A03.bB6Ng01-194A03.g
ACCGA016817GA016818
length1,1761,190
definitionB6Ng01-194A03.b B6Ng01-194A03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctttttatacagtagacttccaattacttggactagatggcat
gctatttcatctatatcagaatgtcagaaaatcaaaagtaaaaacaactc
tttgtcaatatttgaggctgttttcagaacaattttctcttatttcagaa
aattgagttcttgatattcagaaatctctactccaacactaagcaattgt
tagcattaaaagcaaaagaccactgatttccagttgtgagataaaatgaa
aatcaaattgccatgcccaaatctaatactatgacaatcttgataaatgt
tctgccttatctctcaccccaggctataaaggcctattttacaatgtcta
gatctcatcacattcatttttaattgacacattctcattcacaattgtga
tacacactgaaaatgcagtatgtttaaataataggaaatgataatattgg
aataactagaattttcgtgatttcactcaggacgatatcctccatatcca
tccatttgcttaagaatttcatgaattcattatttttaattactgagtag
tactccatagaatttccatcttttaaaacatttatcatgcctatgtactt
gaaatcttcaaattttctggctattctgccatgtctaataaattattata
tactatgtcaactctgtatatttaattttgactgaacaaccttgatcaaa
ctccctggcaaccattttcctttttgacccacatggttgtctgtagtctt
agctttgtgagcatcttgatgcatgcagcaacctgtgaccctattgcttt
cttctattaagggcctcctccccattcttcctgagaacaggccatggttc
ttacagcgtgagtgaaatctaatttgagatttctgtttattgaggtctcc
ttcatgtaatctctgaacatgtgtcaaatggctaggatctatttgtctct
ctgtgtcctctcactagtctcatttatctagctcctctagccataatttg
tgtgtctttgagctacctccccattagatcaggacttcactccaccttag
taatcatccttagctcctgccatgaatatgggaaactatattgctaggta
agaacatcaaaaatccaaatgtaagctgtcctaagattctttatgaaatt
atttaaacggaatcttctccttctga
gaattctggtagaattaccttccctgtcctcaagctgtactactgagcaa
ttatgataaaaactgtatggtactggtacagctacagacaggtagattaa
tgaattagaattgaagaccaagaaatgaacccacacacctatgatcacct
gatctttgacaaaggagctaaaaccatccagtggaaaaaaagacagcatt
ttcaacaaatggtactggcttaacaggcagttagcctgtagaagaatgtg
aattgatccattctcatctccttgtacaaagctcaggtctaaatgaataa
aggacctccatataaaaccaaagacactgaaactgatagagaagaaagtt
gggaagagcctcaaaaatatgggtatagggaaaaattcctgaacagaaca
ccaatggcttgtgctgtaagatcaagaatcgacaaatgggacctcataaa
attccaaatcttctgtaaggcaaaggacactgtcaacaagacataaagtc
cactgaaagatcgggaaaggaattttaccaatcctaaacccgataggtga
ctaatatccaatatatataaagaactcaaaaaggtggactccagaaaatc
aaacaacccgattaaaaatgaggcacagagctaaacgaagagttctcaac
tgaggaatactgaatggctgagaagcacctgaaaaaatgttcaacatctt
taatcatcagggaaatgtaaatcaaaacaatcctgggattccacctcatg
ccagtcagagtggctaagatcaaaaattcagtgacagaagatgctggcaa
ggatgtggagaaagagaaacactcctcttttgttggtgggattgcaagct
ggtacatccactctggaaatcagtttgggtggttcctctgaaaactggac
atagtactactggagacccagcatacctctcctgcgtatatactagagat
gttccaacttttaataaagacacatgcatcactatgtcacagcagcctta
tttatatagccagagatgcaaagacccagaatatccttcagcagagaaat
gatacagaaaatggtgtacatgtgctacaaatgagtactacctcagctat
aaaacattgaattatgattctattgaaatgattgctgaagttacattgag
tgaggtaccaatccaaaagagaccttccagtgataattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_28245500_28246664
seq2: B6Ng01-194A03.b_44_1219 (reverse)

seq1  TCAGAAAGGAGAAGATCCTGTTAAAATA--TTCATAAAGAA-CTTA-GAC  46
      |||| ||||||||||| | ||| |||||  ||||||||||| |||| |||
seq2  TCAG-AAGGAGAAGATTCCGTTTAAATAATTTCATAAAGAATCTTAGGAC  49

seq1  AGCTAACATTTGGA-TTTTGATTGTC-TACCTAGC-ATGTAGTTT-CCAT  92
      |||| ||||||||| |||||||  || |||||||| || |||||| ||||
seq2  AGCTTACATTTGGATTTTTGATGTTCTTACCTAGCAATATAGTTTCCCAT  99

seq1  A-TCAT-GCA-GAGCTAAGGATGA-TACTAAGGT-GAGTGAAGTCCTGAT  137
      | |||| ||| ||||||||||||| ||||||||| |||||||||||||||
seq2  ATTCATGGCAGGAGCTAAGGATGATTACTAAGGTGGAGTGAAGTCCTGAT  149

seq1  CTAATGGGGAGGTAGCTCAAAGACACACAAATTATGGCTAGAGGAGCTAA  187
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTAATGGGGAGGTAGCTCAAAGACACACAAATTATGGCTAGAGGAGCT-A  198

seq1  GATAAATGAGACTAGTGAGAGGACACAGAGAGACAAATAGATCCTAGCCA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGAGACTAGTGAGAGGACACAGAGAGACAAATAGATCCTAGCCA  248

seq1  TTTGACACATGTTCAGAGATTACATGAAGGAGACCTCAATAAACAGAAAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACACATGTTCAGAGATTACATGAAGGAGACCTCAATAAACAGAAAT  298

seq1  CTCAAATTAGATTTCACTCACGCTGTAAGAACCATGGCCTGTTCTCAGGA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTAGATTTCACTCACGCTGTAAGAACCATGGCCTGTTCTCAGGA  348

seq1  AGAATGGGGAGGAGGCCCTTAATAGAAGAAAGCAATAGGGTCACAGGTTG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGGAGGAGGCCCTTAATAGAAGAAAGCAATAGGGTCACAGGTTG  398

seq1  CTGCATGCATCAAGATGCTCACAAAGCTAAGACTACAGACAACCATGTGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCATCAAGATGCTCACAAAGCTAAGACTACAGACAACCATGTGG  448

seq1  GTCAAAAAGGAAAATGGTTGCCAGGGAGTTTGATCAAGGTTGTTCAGTCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAAGGAAAATGGTTGCCAGGGAGTTTGATCAAGGTTGTTCAGTCA  498

seq1  AAATTAAATATACAGAGTTGACATAGTATATAATAATTTATTAGACATGG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATATACAGAGTTGACATAGTATATAATAATTTATTAGACATGG  548

seq1  CAGAATAGCCAGAAAATTTGAAGATTTCAAGTACATAGGCATGATAAATG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGCCAGAAAATTTGAAGATTTCAAGTACATAGGCATGATAAATG  598

seq1  TTTTAAAAGATGGAAATTCTATGGAGTACTACTCAGTAATTAAAAATAAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGATGGAAATTCTATGGAGTACTACTCAGTAATTAAAAATAAT  648

seq1  GAATTCATGAAATTCTTAAGCAAATGGATGGATATGGAGGATATCGTCCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAATTCTTAAGCAAATGGATGGATATGGAGGATATCGTCCT  698

seq1  GAGTGAAATCACGAAAATTCTAGTTATTCCAATATTATCATTTCCTATTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAATCACGAAAATTCTAGTTATTCCAATATTATCATTTCCTATTA  748

seq1  TTTAAACATACTGCATTTTCAGTGTGTATCACAATTGTGAATGAGAATGT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACATACTGCATTTTCAGTGTGTATCACAATTGTGAATGAGAATGT  798

seq1  GTCAATTAAAAATGAATGTGATGAGATCTAGACATTGTAAAATAGGCCTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTAAAAATGAATGTGATGAGATCTAGACATTGTAAAATAGGCCTT  848

seq1  TATAGCCTGGGGTGAGAGATAAGGCAGAACATTTATCAAGATTGTCATAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCTGGGGTGAGAGATAAGGCAGAACATTTATCAAGATTGTCATAG  898

seq1  TATTAGATTTGGGCATGGCAATTTGATTTTCATTTTATCTCACAACTGGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGATTTGGGCATGGCAATTTGATTTTCATTTTATCTCACAACTGGA  948

seq1  AATCAGTGGTCTTTTGCTTTTAATGCTAACAATTGCTTAGTGTTGGAGTA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGGTCTTTTGCTTTTAATGCTAACAATTGCTTAGTGTTGGAGTA  998

seq1  GAGATTTCTGAATATCAAGAACTCAATTTTCTGAAATAAGAGAAAATTGT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCTGAATATCAAGAACTCAATTTTCTGAAATAAGAGAAAATTGT  1048

seq1  TCTGAAAACAGCCTCAAATATTGACAAAGAGTTGTTTTTACTTTTGATTT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAACAGCCTCAAATATTGACAAAGAGTTGTTTTTACTTTTGATTT  1098

seq1  TCTGACATTCTGATATAGATGAAATAGCATGCCATCTAGTCCAAGTAATT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATTCTGATATAGATGAAATAGCATGCCATCTAGTCCAAGTAATT  1148

seq1  GGAAGTCTACTGTATAAAAAGGGAATTC  1165
      ||||||||||||||||||||||||||||
seq2  GGAAGTCTACTGTATAAAAAGGGAATTC  1176