BAC Information

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BAC

Clone NameB6Ng01-194K06
Chromosome11 (Build37)
Map Location 70,599,090 - 70,750,109
singlet/doubletdoublet
Overlap geneA430084P05Rik, Rabep1, LOC668461
Upstream geneChrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3
Downstream geneNup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194K06.bB6Ng01-194K06.g
ACCGA017278GA017279
length1,1071,152
definitionB6Ng01-194K06.b B6Ng01-194K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,749,008 - 70,750,109)(70,599,090 - 70,600,239)
sequence
gaattcaattcccaaaaccaccaaaacaaagtaaaaagtgaagtctgaat
gcagactgacagtaccagtgctgggtagagtatggtgtatctgagcctgg
cattttcttttcagtgctaggaaagcactctttcactgagctacaccttc
caggccgagtgtgggtcatctttgtagtgtgatctaaagagagctctaca
aagtagaggggagacctaggctgcctatggcagaaaagtgcctgggaggt
caggtggaaagcagcactctttcaagaaccttggaaaactaatgatttcc
tagagaagtatagtgcgaggagaaactctgttgttttgatttcatttgga
aaggcagtcttcctatgtgctcaggctggccccagacttgaatactcagc
tccttgagtgctaggattacagatgggtcaccacacccgtctcacttctt
ccctcttaaagggaaagagctgggcaactttttacacagtgaaacaaaag
atcaatcaagaggtgtcaaaagccagagaacactgagatggggccagtca
aggcactgccaatgttacaccatggagagagacagaccattttatctcaa
agacaagactgataataaagcaggagaacatgtgcctggggaacctggga
ctccaagtggcctgtgaaatgactgagcagtgagggtacggagatgacag
tgactgaaagccattgtgaagaatgaaagacaaatcttaggacaaatgaa
agactgtctaggagtactggagcccatgacagcaacggcatgagatgcca
ccaattctggaagcattgggcttcttcaaataacaggcctaatccagaac
tgggcaatagctgagtgagggcagcaagaggagagtacgagctggaaggc
aacagaggagctcagcaagccatagaaggagcagcctgggagagaagaag
gcaaagctgggaagctgtcactccaagttttaggagcgggagaggcacgc
agtgagacagaagacacttgagtcacagatgaactgagaagcatggttag
cccttgtttgaggagcagggcagcactggaggaaggtctttttgggttca
aggacac
gaattccagagagtgatcctgtccaaaacgcatcctagtcactatttaat
taaaacttgcttcaaatttggctcaaaattatggaactggtttttctttt
ttgtcttctaaatctcaggattatcaagagccctgtaagagaaaggctat
ttgcagcattcgggcactgtgcctaaacccagcgctctaacacctctgga
actgtggctgaaacagagcaaatggcaaagagcaggcttgtggcacagtg
acacagccgcttacctgtctgcagctgtaacctctggttcctttggtgac
aaagcccacctccagccagaaagggtggaaatggcactttcaccccatct
ctcctatagcacattgtgacatatgtgatgtatgtgacattgtctgaata
tttgtgttaggtccaaagcagggttccccccaaatggcagtgctggtgac
agtgttcttaacagaagtgctctgagtgggtgaacccgagggttgttgct
gggaaaacagaaaccaaaactttactaggaaagccattactcacttctct
tttccaacccaaggtcaattacctcaggcaaggccatctcattctgggac
agcctctatacataaagcccccatgttagattccaagctcttctgaagcc
tgcaactctcctcccggggtccctgtccccttaagactgacaaggctttt
ctcactggaggatgttctctaaccttgcagtttggtttccaaaataaact
ttcctattcatggggtggtctagttcagtggttctactaactcacagttt
gtatgcccaagattacatgtgttgaaatatcatcccccaaatggcaatgt
ttaaggcatagaacctatgctcttacgaatgggattaatgcccttataat
agaaagccctggaaagctgccttccacacccagcatgtgagggcaaggca
gacatgcagcatctttgaagcagagtgagtactctcaccagaacactgag
tctgacaccaccttgctcttgatcccttgacttctgtgatgttgacaaat
agatttctgttgttctaaagttactggggctatattttgagtgatcccaa
ggtctacgatgtattacaggcttgctccccaagtatggtggctttttggg
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70749008_70750109
seq2: B6Ng01-194K06.b_39_1145 (reverse)

seq1  GTGTCCTTGA--CCCAAAAGACCTTTCCTCCAGTGCTGCCCTGCTCCTC-  47
      ||||||||||  || |||||||| ||||||||||||||||||||||||| 
seq2  GTGTCCTTGAACCCAAAAAGACC-TTCCTCCAGTGCTGCCCTGCTCCTCA  49

seq1  -ACAAGGGCT-ACCATGCTTCTCAGTTCATTCTGTGACTCAAGTGTCTTC  95
       ||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  AACAAGGGCTAACCATGCTTCTCAGTTCA-TCTGTGACTCAAGTGTCTTC  98

seq1  TGTCTCACTGCGTGCCTCTCCCGCTCCT-AAACTTGGAGTGACAGCTTCC  144
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTCTCACTGCGTGCCTCTCCCGCTCCTAAAACTTGGAGTGACAGCTTCC  148

seq1  CAGCTTTGCCTTCTTCTCTCCCAGGCTGCTCCTTCTATGGCTTGCTGAGC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGCCTTCTTCTCTCCCAGGCTGCTCCTTCTATGGCTTGCTGAGC  198

seq1  TCCTCTGTTGCCTTCCAGCTCGTACTCTCCTCTTGCTGCCCTCACTCAGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTTGCCTTCCAGCTCGTACTCTCCTCTTGCTGCCCTCACTCAGC  248

seq1  TATTGCCCAGTTCTGGATTAGGCCTGTTATTTGAAGAAG-CCAATGCTTC  293
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATTGCCCAGTTCTGGATTAGGCCTGTTATTTGAAGAAGCCCAATGCTTC  298

seq1  CAGAATTGGTGGCATCTCATGCCGTTGCTGTCATGGGCTCCAGTACTCCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGGTGGCATCTCATGCCGTTGCTGTCATGGGCTCCAGTACTCCT  348

seq1  AGACAGTCTTTCATTTGTCCTAAGATTTGTCTTTCATTCTTCACAATGGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCTTTCATTTGTCCTAAGATTTGTCTTTCATTCTTCACAATGGC  398

seq1  TTTCAGTCACTGTCATCTCCGTACCCTCACTGCTCAGTCATTTCACAGGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCACTGTCATCTCCGTACCCTCACTGCTCAGTCATTTCACAGGC  448

seq1  CACTTGGAGTCCCAGGTTCCCCAGGCACATGTTCTCCTGCTTTATTATCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAGTCCCAGGTTCCCCAGGCACATGTTCTCCTGCTTTATTATCA  498

seq1  GTCTTGTCTTTGAGATAAAATGGTCTGTCTCTCTCCATGGTGTAACATTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTTTGAGATAAAATGGTCTGTCTCTCTCCATGGTGTAACATTG  548

seq1  GCAGTGCCTTGACTGGCCCCATCTCAGTGTTCTCTGGCTTTTGACACCTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCTTGACTGGCCCCATCTCAGTGTTCTCTGGCTTTTGACACCTC  598

seq1  TTGATTGATCTTTTGTTTCACTGTGTAAAAAGTTGCCCAGCTCTTTCCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGATCTTTTGTTTCACTGTGTAAAAAGTTGCCCAGCTCTTTCCCT  648

seq1  TTAAGAGGGAAGAAGTGAGACGGGTGTGGTGACCCATCTGTAATCCTAGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGGAAGAAGTGAGACGGGTGTGGTGACCCATCTGTAATCCTAGC  698

seq1  ACTCAAGGAGCTGAGTATTCAAGTCTGGGGCCAGCCTGAGCACATAGGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGAGCTGAGTATTCAAGTCTGGGGCCAGCCTGAGCACATAGGAA  748

seq1  GACTGCCTTTCCAAATGAAATCAAAACAACAGAGTTTCTCCTCGCACTAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTTTCCAAATGAAATCAAAACAACAGAGTTTCTCCTCGCACTAT  798

seq1  ACTTCTCTAGGAAATCATTAGTTTTCCAAGGTTCTTGAAAGAGTGCTGCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTAGGAAATCATTAGTTTTCCAAGGTTCTTGAAAGAGTGCTGCT  848

seq1  TTCCACCTGACCTCCCAGGCACTTTTCTGCCATAGGCAGCCTAGGTCTCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTGACCTCCCAGGCACTTTTCTGCCATAGGCAGCCTAGGTCTCC  898

seq1  CCTCTACTTTGTAGAGCTCTCTTTAGATCACACTACAAAGATGACCCACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTTTGTAGAGCTCTCTTTAGATCACACTACAAAGATGACCCACA  948

seq1  CTCGGCCTGGAAGGTGTAGCTCAGTGAAAGAGTGCTTTCCTAGCACTGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCCTGGAAGGTGTAGCTCAGTGAAAGAGTGCTTTCCTAGCACTGAA  998

seq1  AAGAAAATGCCAGGCTCAGATACACCATACTCTACCCAGCACTGGTACTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGCCAGGCTCAGATACACCATACTCTACCCAGCACTGGTACTG  1048

seq1  TCAGTCTGCATTCAGACTTCACTTTTTACTTTGTTTTGGTGGTTTTGGGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGCATTCAGACTTCACTTTTTACTTTGTTTTGGTGGTTTTGGGA  1098

seq1  ATTGAATTC  1102
      |||||||||
seq2  ATTGAATTC  1107

seq1: chr11_70599090_70600239
seq2: B6Ng01-194K06.g_66_1217

seq1  GAATTCCAGAGAGTGATCCTGTCCAAAACGCATCCTAGTCACTATTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAGTGATCCTGTCCAAAACGCATCCTAGTCACTATTTAAT  50

seq1  TAAAACTTGCTTCAAATTTGGCTCAAAATTATGGAACTGGTTTTTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTGCTTCAAATTTGGCTCAAAATTATGGAACTGGTTTTTCTTTT  100

seq1  TTGTCTTCTAAATCTCAGGATTATCAAGAGCCCTGTAAGAGAAAGGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCTAAATCTCAGGATTATCAAGAGCCCTGTAAGAGAAAGGCTAT  150

seq1  TTGCAGCATTCGGGCACTGTGCCTAAACCCAGCGCTCTAACACCTCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCATTCGGGCACTGTGCCTAAACCCAGCGCTCTAACACCTCTGGA  200

seq1  ACTGTGGCTGAAACAGAGCAAATGGCAAAGAGCAGGCTTGTGGCACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCTGAAACAGAGCAAATGGCAAAGAGCAGGCTTGTGGCACAGTG  250

seq1  ACACAGCCGCTTACCTGTCTGCAGCTGTAACCTCTGGTTCCTTTGGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCGCTTACCTGTCTGCAGCTGTAACCTCTGGTTCCTTTGGTGAC  300

seq1  AAAGCCCACCTCCAGCCAGAAAGGGTGGAAATGGCACTTTCACCCCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCACCTCCAGCCAGAAAGGGTGGAAATGGCACTTTCACCCCATCT  350

seq1  CTCCTATAGCACATTGTGACATATGTGATGTATGTGACATTGTCTGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATAGCACATTGTGACATATGTGATGTATGTGACATTGTCTGAATA  400

seq1  TTTGTGTTAGGTCCAAAGCAGGGTTCCCCCCAAATGGCAGTGCTGGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTAGGTCCAAAGCAGGGTTCCCCCCAAATGGCAGTGCTGGTGAC  450

seq1  AGTGTTCTTAACAGAAGTGCTCTGAGTGGGTGAACCCGAGGGTTGTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTTAACAGAAGTGCTCTGAGTGGGTGAACCCGAGGGTTGTTGCT  500

seq1  GGGAAAACAGAAACCAAAACTTTACTAGGAAAGCCATTACTCACTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACAGAAACCAAAACTTTACTAGGAAAGCCATTACTCACTTCTCT  550

seq1  TTTCCAACCCAAGGTCAATTACCTCAGGCAAGGCCATCTCATTCTGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACCCAAGGTCAATTACCTCAGGCAAGGCCATCTCATTCTGGGAC  600

seq1  AGCCTCTATACATAAAGCCCCCATGTTAGATTCCAAGCTCTTCTGAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTATACATAAAGCCCCCATGTTAGATTCCAAGCTCTTCTGAAGCC  650

seq1  TGCAACTCTCCTCCCGGGGTCCCTGTCCCCTTAAGACTGACAAGGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTCTCCTCCCGGGGTCCCTGTCCCCTTAAGACTGACAAGGCTTTT  700

seq1  CTCACTGGAGGATGTTCTCTAACCTTGCAGTTTGGTTTCCAAAATAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGAGGATGTTCTCTAACCTTGCAGTTTGGTTTCCAAAATAAACT  750

seq1  TTCCTATTCATGGGGTGGTCTAGTTCAGTGGTTCTACTAACTCACAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTCATGGGGTGGTCTAGTTCAGTGGTTCTACTAACTCACAGTTT  800

seq1  GTATGCCCAAGATTACATGTGTTGAAATATCATCCCCCAAATGGCAATG-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTATGCCCAAGATTACATGTGTTGAAATATCATCCCCCAAATGGCAATGT  850

seq1  TTAAGGCATAGAACCTATGCTCTTACGAATGGGATTAATGCCCTTATAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCATAGAACCTATGCTCTTACGAATGGGATTAATGCCCTTATAAT  900

seq1  AG-AAGCCCTGGAAAGCTGCCTTCCACACCCAGCATGTGAGGGCAAGGCA  948
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCCTGGAAAGCTGCCTTCCACACCCAGCATGTGAGGGCAAGGCA  950

seq1  GACAGGCAGCATCTTTGAAGCAGAGTGAGTACTCTCACCAG-ACACTGAG  997
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACATGCAGCATCTTTGAAGCAGAGTGAGTACTCTCACCAGAACACTGAG  1000

seq1  TCTGACA-CACCTTGCTCTTGGATTCCCTGACTTCTGTGATGTTGAACAA  1046
      ||||||| |||||||||||| ||| || ||||||||||||||||||  ||
seq2  TCTGACACCACCTTGCTCTT-GATCCCTTGACTTCTGTGATGTTGACAAA  1049

seq1  TAGATTTCTGTTGTTCCTAAAGTAACTGGGGCTATATTTTGAGTGTACCC  1096
      ||||||||||||||| ||||||| |||||||||||||||||||||  |||
seq2  TAGATTTCTGTTGTT-CTAAAGTTACTGGGGCTATATTTTGAGTGATCCC  1098

seq1  CAAAGGTCTACGTATGTATTACAGGCTTGCTCCCC-AGGATGGTG--CTT  1143
        |||||||||| |||||||||||||||||||||| || ||||||   ||
seq2  --AAGGTCTACG-ATGTATTACAGGCTTGCTCCCCAAGTATGGTGGCTTT  1145

seq1  TTGGGAG  1150
      |||||||
seq2  TTGGGAG  1152