BAC Information

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BAC

Clone NameB6Ng01-195C21
Chromosome11 (Build37)
Map Location 87,475,386 - 87,636,433
singlet/doubletdoublet
Overlap geneRnf43, Supt4h1, Bzrap1, Mpo, Lpo
Upstream geneTmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5
Downstream geneMks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195C21.bB6Ng01-195C21.g
ACCGA017670GA017671
length2561,100
definitionB6Ng01-195C21.b B6Ng01-195C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,636,180 - 87,636,433)(87,475,386 - 87,476,492)
sequence
tttctttctctttttaatgaggagagagagagagagagagagagagagag
agagagagagagagagagagagagagagagagagagagagagagagagag
agtcaaagtaaagaaatgagaagccaggtttcctaatcagatatggcaga
gggaatgggagggttggtgttccatgggtcaagcgccccagttttgaggg
aggggaaagtcctgtgtaatttctattgaacggtgtgctgtgttgcctcc
cctgtg
gaattcactggaaatggagttgtagatggttgtgagccaccatgtaaatg
ttgaaaactagacttcagccctctggatgaacaggcagccagtgctctta
accactgagccactgctccagctccaagcataggtttaatgcttagcttc
tatatgcagactaacttagagtcttacactggaagaataggtttgaccca
aagagtaagagagaaataacagattccagacttctgacagcaacctgatt
cgagagatccatccaggtgcagtttaggcagaactactgaacgtagtaag
aactgaagaaaagctatgcagaagtctttattcacagtggcagacataag
caacaagtactcagtataagatctctcaattctggctttgtgccatttgt
agacactaaaacatgggaagaatagagatctatttgaatttgtaactgca
agactttgcgccgttcttttgtcttttggatgtctttgttttctgttccg
ttcctcataccgccgtcagtgtgctagtgcttacagaatagacacatttg
ggtggccctgatttatctcctgtggggaaaggtaaggactgattgaactg
catgcagttgggctgtcgctcactagggggagtaaaagagcaagagacag
aaagagaccgagagaagacttttggttaaattagtgagtgcgtgcaccaa
gaggaggaggggccggcttgcgtgtagcggctccaccctcactttgtcag
caggtagagagcgtgattgcagtcccaggggaagaagtcagagctggtac
accaattacaaaccacaggtttcctgctgtagggagctgatccagaattg
tcttcttgaaaggaagcacttcaaccctgcctcctcctgaacttccaagt
ccgtccatgattcagggataccgtcttctccctctggatatctgtgattt
gggtagtgactgtctattgctgcttcgtttctcatctcttccagatatcg
gtacagaggcggaggagagacttttgtagattttagagatgattttggct
catctttagcattttccagagttcttgaaggaaggacagtagctcctcgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_87636180_87636433
seq2: B6Ng01-195C21.b_49_304 (reverse)

seq1  CACAGGGGAGGCAACACAGCACACCTTTCCTTAGAAATTCCACAGGACTT  50
      ||||||||||||||||||||||||| |||  |||||||| ||||||||||
seq2  CACAGGGGAGGCAACACAGCACACCGTTCAATAGAAATTACACAGGACTT  50

seq1  TCCCCTCCCTCAAAACTGGGGCGCTTGACCCATGGAACACCAACCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCTCAAAACTGGGGCGCTTGACCCATGGAACACCAACCCTCCC  100

seq1  ATTCCCTCTGCCATATCTGATTAGGAAACCTGGCTTCTCATTTCTTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCTGCCATATCTGATTAGGAAACCTGGCTTCTCATTTCTTTACT  150

seq1  TTGA--CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  198
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCATTAAAAAGAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCATTAAAAAGAGA  250

seq1  AAGAAA  254
      ||||||
seq2  AAGAAA  256

seq1: chr11_87475386_87476492
seq2: B6Ng01-195C21.g_63_1162

seq1  GAATTCACTGGAAATGGAGTTGTAGATGGTTGTGAGCCACCATGTAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAAATGGAGTTGTAGATGGTTGTGAGCCACCATGTAAATG  50

seq1  TTGAAAACTAGACTTCAGCCCTCTGGATGAACAGGCAGCCAGTGCTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACTAGACTTCAGCCCTCTGGATGAACAGGCAGCCAGTGCTCTTA  100

seq1  ACCACTGAGCCACTGCTCCAGCTCCAAGCATAGGTTTAATGCTTAGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGCCACTGCTCCAGCTCCAAGCATAGGTTTAATGCTTAGCTTC  150

seq1  TATATGCAGACTAACTTAGAGTCTTACACTGGAAGAATAGGTTTGACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCAGACTAACTTAGAGTCTTACACTGGAAGAATAGGTTTGACCCA  200

seq1  AAGAGTAAGAGAGAAATAACAGATTCCAGACTTCTGACAGCAACCTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAGAGAGAAATAACAGATTCCAGACTTCTGACAGCAACCTGATT  250

seq1  CGAGAGATCCATCCAGGTGCAGTTTAGGCAGAACTACTGAACGTAGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGATCCATCCAGGTGCAGTTTAGGCAGAACTACTGAACGTAGTAAG  300

seq1  AACTGAAGAAAAGCTATGCAGAAGTCTTTATTCACAGTGGCAGACATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGAAAAGCTATGCAGAAGTCTTTATTCACAGTGGCAGACATAAG  350

seq1  CAACAAGTACTCAGTATAAGATCTCTCAATTCTGGCTTTGTGCCATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTACTCAGTATAAGATCTCTCAATTCTGGCTTTGTGCCATTTGT  400

seq1  AGACACTAAAACATGGGAAGAATAGAGATCTATTTGAATTTGTAACTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTAAAACATGGGAAGAATAGAGATCTATTTGAATTTGTAACTGCA  450

seq1  AGACTTTGCGCCGTTCTTTTGTCTTTTGGATGTCTTTGTTTTCTGTTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGCGCCGTTCTTTTGTCTTTTGGATGTCTTTGTTTTCTGTTCCG  500

seq1  TTCCTCATACCGCCGTCAGTGTGCTAGTGCTTACAGAATAGACACATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATACCGCCGTCAGTGTGCTAGTGCTTACAGAATAGACACATTTG  550

seq1  GGTGGCCCTGATTTATCTCCTGTGGGGAAAGGTAAGGACTGATTGAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCCTGATTTATCTCCTGTGGGGAAAGGTAAGGACTGATTGAACTG  600

seq1  CATGCAGTTGGGCTGTCGCTCACTAGGGGGAGTAAAAGAGCAAGAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGTTGGGCTGTCGCTCACTAGGGGGAGTAAAAGAGCAAGAGACAG  650

seq1  AAAGAGACCGAGAGAAGACTTTTGGTTAAATTAGTGAGTGCGTGCACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACCGAGAGAAGACTTTTGGTTAAATTAGTGAGTGCGTGCACCAA  700

seq1  GAGGAGGAGGGGCCGGCTTGCGTGTAGCGGCTCCACCCTCACTTTGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGGGGCCGGCTTGCGTGTAGCGGCTCCACCCTCACTTTGTCAG  750

seq1  CAGGTAGAGAGCGTGATTGCAGTCCCAGGGGAAGAAGTCAGAGCTGGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGAGAGCGTGATTGCAGTCCCAGGGGAAGAAGTCAGAGCTGGTAC  800

seq1  ACCAATTACAAACCACAGGTTTCCTGCTGTAGGGAGCTGATCCAGAATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTACAAACCACAGGTTTCCTGCTGTAGGGAGCTGATCCAGAATTG  850

seq1  TCTTTCTTGAAAGGAAGCACTTCAACCCTGCCTCCTCCTGAACTTCCAAG  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TTCTTGAAAGGAAGCACTTCAACCCTGCCTCCTCCTGAACTTCCAAG  899

seq1  TCCGTCCATGATTCAGGGATACCGTCTTCTCCCTCTGGGATATTCTGTGA  950
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  TCCGTCCATGATTCAGGGATACCGTCTTCTCCCTCT-GGATA-TCTGTGA  947

seq1  TTTGGGTAGTGACTGTTCTATTTGCTGCTTCGTTTCTCATCTCTTCCAAG  1000
      ||||||||||||||| |||| |||||||||||||||||||||||||| ||
seq2  TTTGGGTAGTGACTG-TCTA-TTGCTGCTTCGTTTCTCATCTCTTCC-AG  994

seq1  ATATTCCGTACAGAGGCGGAGGGAGAAGACTTTTGTTAGATTTTAGAGAT  1050
      ||| || ||||||||||||| |||| ||||||||| ||||||||||||||
seq2  ATA-TCGGTACAGAGGCGGA-GGAG-AGACTTTTG-TAGATTTTAGAGAT  1040

seq1  GATTTTGGCTCATCTTTAAGCA-TTTCCAGAGTTCTTGA--GGAGGACAG  1097
      ||||||||||||||||| |||| ||||||||||||||||  | |||||||
seq2  GATTTTGGCTCATCTTT-AGCATTTTCCAGAGTTCTTGAAGGAAGGACAG  1089

seq1  TAGCT-CTCGT  1107
      ||||| |||||
seq2  TAGCTCCTCGT  1100