BAC Information

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BAC

Clone NameB6Ng01-195G18
Chromosome11 (Build37)
Map Location 50,954,382 - 51,097,830
singlet/doubletdoublet
Overlap geneOlfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4
Upstream geneTbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518
Downstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195G18.bB6Ng01-195G18.g
ACCGA017847GA017848
length1,1301,083
definitionB6Ng01-195G18.b B6Ng01-195G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,954,382 - 50,955,501)(51,096,738 - 51,097,830)
sequence
gaattcaactaaattttaagatacaaatacaacagaaaaataaattatgt
tcctaaagaaaaccatgaggaaaggaaagtattccactgataatagtaat
aaaataaatacaacacataagaagaaccttaactaaggaaatcaaagagc
cctacattgaacatctaaaatcttgtacttttgtttagcttttagcacaa
cagtctgtaaagaaaagcaatttttaatgtttgccatatttccttagctt
atacaaatgctcttggagttcaggattctttgttaaaaaataaattattg
ggtagcaaaggtggttcagcagttttcgtcactcttgcaaaggacccaca
taaagttcccagcacccacatggcagctcacagccgtgagcaactctagt
tccagaagatctgacaccttcttctggcctctgtgggcaccaggtatgtt
ccatggacacacatttaagcaaacactcacatgcatacattaaaaaataa
aaagctaaagtatttgtcacagtttatggaagattaaatgtttcactcaa
gaaaatgcatttaagatccacatgtcatgaaaaagcgacatgagttcatc
acttcttgtgacattaaagaaggcattagtatgcattctcacactgtttc
ctatttccaaagaggttggatctcaaatggaaaaaaaaaaagtttaaaag
cactcttgtgacaaaatacaaaaagaaaaaatgtttagctgcaagagcaa
caaactattgagattcatcaaaaagaatatacatgtttcttcccagatga
aattcatatggtacttagtcttttgggacagatggaagcaagtcaaggct
ccaagaattggttttatttacacatttatcaagcaagagatggaaagtaa
aaacccagaggctgcaaacttcagacagattacttcttttgatccaaaag
tccttgaaaggagattgttcttcagaagactagaaaaaggaagtcataac
caacacagaaactctacactttactacacacacacacacatctcacacgc
actcacccactcccacttagattatgataaaggtctacattactgccttt
gatcctgatgtccatgcaacaagatcacag
gaattcattgtcattacagccacagtaaagagaaatgttaatgcaaggat
aacttggggcagaaatgaagccacactagaaaaatatgaactctaagtct
ctgtatgaatgtaagacttcttgctgggttggtggtaatgctggcctgtg
acaccacacttgggaggtgggtcaggaaggatcaggagttcaaagctaag
tatggttatacagcaagttcgaggccaacctgggctatatgttatcctgt
ctccaaaacaaaaacttaaatatttcttactaaaatctagacatttgctt
tggccccatgatcagtgatcgaggaaggagaatcaccctgaggatgttga
ggtagcctgaactataaagttaagacctcgtctcaaaactctcacaaaaa
catggttcgatggcttaaaaatagtgacatgcagcaggactttatatggc
tatggaggatgctcattctgaactgtcatgaacagtcacttagttaccat
agttacagcaacacatcacccggggtgggtatcaaagcagtcatgaaaac
agccaagaataagttaaaagacatataatggctccttacctagaaaacaa
aacagggagggtaaaggccagtgagatgtcaacctgtcatcctggctggg
ttttatatatatagatctatatacatcaatcccagtataagtttttgaga
taagcttagactatgtaccaaaacaacctcccagcccccccctttttttt
tttgcaaactttttaattatatttacttttgtggaagtatggggtatatc
aagacatgaatgaaaacttcacttgtccaacttggcagcaaatgcttttt
aaccactgggccatcttgccagcccacacatgtgtttgataggatagtgg
tattatacaatatatttaaatttattttaaaaaagattatcgatgaaatt
atagtagctagcatgtgtatttaacagtagcctgataaaatctccagtat
ttgagctgactatataataaggaaactcattcatcctgcattaacatttt
ctttaggtaaaaaatctattaacagctctaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50954382_50955501
seq2: B6Ng01-195G18.b_45_1174

seq1  GAATTCAACTAAATTTTAAGATACAAATACAACAGAAAAATAAATTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAAATTTTAAGATACAAATACAACAGAAAAATAAATTATGT  50

seq1  TCCTAAAGAAAACCATGAGGAAAGGAAAGTATTCCACTGATAATAGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAGAAAACCATGAGGAAAGGAAAGTATTCCACTGATAATAGTAAT  100

seq1  AAAATAAATACAACACATAAGAAGAACCTTAACTAAGGAAATCAAAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATACAACACATAAGAAGAACCTTAACTAAGGAAATCAAAGAGC  150

seq1  CCTACATTGAACATCTAAAATCTTGTACTTTTGTTTAGCTTTTAGCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATTGAACATCTAAAATCTTGTACTTTTGTTTAGCTTTTAGCACAA  200

seq1  CAGTCTGTAAAGAAAAGCAATTTTTAATGTTTGCCATATTTCCTTAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTAAAGAAAAGCAATTTTTAATGTTTGCCATATTTCCTTAGCTT  250

seq1  ATACAAATGCTCTTGGAGTTCAGGATTCTTTGTTAAAAAATAAATTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATGCTCTTGGAGTTCAGGATTCTTTGTTAAAAAATAAATTATTG  300

seq1  GGTAGCAAAGGTGGTTCAGCAGTTTTCGTCACTCTTGCAAAGGACCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAAAGGTGGTTCAGCAGTTTTCGTCACTCTTGCAAAGGACCCACA  350

seq1  TAAAGTTCCCAGCACCCACATGGCAGCTCACAGCCGTGAGCAACTCTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCCCAGCACCCACATGGCAGCTCACAGCCGTGAGCAACTCTAGT  400

seq1  TCCAGAAGATCTGACACCTTCTTCTGGCCTCTGTGGGCACCAGGTATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGATCTGACACCTTCTTCTGGCCTCTGTGGGCACCAGGTATGTT  450

seq1  CCATGGACACACATTTAAGCAAACACTCACATGCATACATTAAAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGACACACATTTAAGCAAACACTCACATGCATACATTAAAAAATAA  500

seq1  AAAGCTAAAGTATTTGTCACAGTTTATGGAAGATTAAATGTTTCACTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAAAGTATTTGTCACAGTTTATGGAAGATTAAATGTTTCACTCAA  550

seq1  GAAAATGCATTTAAGATCCACATGTCATGAAAAAGCGACATGAGTTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCATTTAAGATCCACATGTCATGAAAAAGCGACATGAGTTCATC  600

seq1  ACTTCTTGTGACATTAAAGAAGGCATTAGTATGCATTCTCACACTGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGTGACATTAAAGAAGGCATTAGTATGCATTCTCACACTGTTTC  650

seq1  CTATTTCCAAAGAGGTTGGATCTCAAATGG-AAAAAAAAAAGTTTAAAAG  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTATTTCCAAAGAGGTTGGATCTCAAATGGAAAAAAAAAAAGTTTAAAAG  700

seq1  CACTCTTGTGACAAAATACAAAAAGAAAAAATGTTTAGCTGCAAGAGCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGTGACAAAATACAAAAAGAAAAAATGTTTAGCTGCAAGAGCAA  750

seq1  CAAACTATTGAGATTCATCAAAAAGAATATACATGTTTCTTCCCAGATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATTGAGATTCATCAAAAAGAATATACATGTTTCTTCCCAGATGA  800

seq1  AATTCATATGGTACTTAGTCTTTTGGGACAGATGGAAGCAAGTCAAGGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATATGGTACTTAGTCTTTTGGGACAGATGGAAGCAAGTCAAGGCT  850

seq1  CCAAGAATTGG-TTTATTTACCACATTTATCAAGCAAGAGATGGAAAGTA  898
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  CCAAGAATTGGTTTTATTTA-CACATTTATCAAGCAAGAGATGGAAAGTA  899

seq1  AAAACCCAGAGGCTGCAAAC-TCAGACAGATTACTTC-TTTGATCC-AAA  945
      |||||||||||||||||||| |||||||||||||||| |||||||| |||
seq2  AAAACCCAGAGGCTGCAAACTTCAGACAGATTACTTCTTTTGATCCAAAA  949

seq1  GTCC-TGAAA-GAGATTGT--CTCAG-AGACTAG-AAAAGGAAGTCA-AA  988
      |||| ||||| ||||||||   |||| ||||||| |||||||||||| ||
seq2  GTCCTTGAAAGGAGATTGTTCTTCAGAAGACTAGAAAAAGGAAGTCATAA  999

seq1  ACAACACAG-AACTCTAACAC-TTACAACACACACACACACA-CACACAC  1035
       |||||||| |||||| |||| |||| ||||||||||||||| | |||||
seq2  CCAACACAGAAACTCT-ACACTTTACTACACACACACACACATCTCACAC  1048

seq1  ACACACACACACACACAC-TAGATTATTGATAAAGGTTCTACATTACTGC  1084
       ||| ||| ||| | ||| ||||||| ||||||||| |||||||||||||
seq2  GCACTCACCCACTCCCACTTAGATTA-TGATAAAGG-TCTACATTACTGC  1096

seq1  TTTTGGATCCTGATGTCCATGCCACAAGGATCACAG  1120
       ||| ||||||||||||||||| |||| ||||||||
seq2  CTTT-GATCCTGATGTCCATGCAACAA-GATCACAG  1130

seq1: chr11_51096738_51097830
seq2: B6Ng01-195G18.g_62_1144 (reverse)

seq1  TATTAGAGATTTT------TTTTTAACCTAAAGAAAAATGTTTTTAATGC  44
      |||||||| | ||      ||||| ||||||||||||    | |||||||
seq2  TATTAGAGCTGTTAATAGATTTTTTACCTAAAGAAAA----TGTTAATGC  46

seq1  AAGAATAGAATGAGTTTCCCTAAATATATATAGCCCAGCTTCAAAATACT  94
      | ||   |||||||||||| ||    |||||||  |||||   |||||||
seq2  AGGA--TGAATGAGTTTCCTTA---TTATATAG-TCAGCT--CAAATACT  88

seq1  TGGAAGATTTTTAAATCAGACTACTGTTTAAATACACATGCTAGCTACCT  144
        | |||||||   ||||| |||||| |||||||||||||||||||| ||
seq2  --GGAGATTTT---ATCAGGCTACTG-TTAAATACACATGCTAGCTA-CT  131

seq1  ATAATTTCATCCATAATTCTTTTTTAAATAAATTTAAATATATTTGTATA  194
      ||||||||||| |||||  ||||| ||||||||||||||||| |||||||
seq2  ATAATTTCATCGATAATCTTTTTTAAAATAAATTTAAATATA-TTGTATA  180

seq1  ATACCACTATCCTATCAAACACATTGTTGTGGGCTGGCAAGATGGCCCAG  244
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  ATACCACTATCCTATCAAACACAT--GTGTGGGCTGGCAAGATGGCCCAG  228

seq1  TGGTT-AAAAGCATTTGCTGCCAAGTTGGACAAGTG-AGTTTTCATTCAT  292
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGTTAAAAAGCATTTGCTGCCAAGTTGGACAAGTGAAGTTTTCATTCAT  278

seq1  GTCTTGATATA-CCCATACTTCCACAAAAGTAAATATAATT-AAAAGTTT  340
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  GTCTTGATATACCCCATACTTCCACAAAAGTAAATATAATTAAAAAGTTT  328

seq1  GC-AAAAAAAAAAGGGGGGGGCTGGGAGGTTGTTTTGGTACATAGTCTAA  389
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAAAAAAAGGGGGGGGCTGGGAGGTTGTTTTGGTACATAGTCTAA  378

seq1  GCTTATCTC-AAAACTTATACTGGGATTGATGTATATAGATCTATATATA  438
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCTCAAAAACTTATACTGGGATTGATGTATATAGATCTATATATA  428

seq1  TAAAACCCAGCCAGGATGACAGGTTGACATCTCACTGGCCTTTACCCTCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCAGCCAGGATGACAGGTTGACATCTCACTGGCCTTTACCCTCC  478

seq1  CTGTTTTGTTTTCTAGGTAAGGAGCCATTATATGTCTTTTAACTTATTCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTTTTCTAGGTAAGGAGCCATTATATGTCTTTTAACTTATTCT  528

seq1  TGGCTGTTTTCATGACTGCTTTGATACCCACCCCGGGTGATGTGTTGCTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTTTCATGACTGCTTTGATACCCACCCCGGGTGATGTGTTGCTG  578

seq1  TAACTATGGTAACTAAGTGACTGTTCATGACAGTTCAGAATGAGCATCCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATGGTAACTAAGTGACTGTTCATGACAGTTCAGAATGAGCATCCT  628

seq1  CCATAGCCATATAAAGTCCTGCTGCATGTCACTATTTTTAAGCCATCGAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCCATATAAAGTCCTGCTGCATGTCACTATTTTTAAGCCATCGAA  678

seq1  CCATGTTTTTGTGAGAGTTTTGAGACGAGGTCTTAACTTTATAGTTCAGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTTTGTGAGAGTTTTGAGACGAGGTCTTAACTTTATAGTTCAGG  728

seq1  CTACCTCAACATCCTCAGGGTGATTCTCCTTCCTCGATCACTGATCATGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCAACATCCTCAGGGTGATTCTCCTTCCTCGATCACTGATCATGG  778

seq1  GGCCAAAGCAAATGTCTAGATTTTAGTAAGAAATATTTAAGTTTTTGTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAGCAAATGTCTAGATTTTAGTAAGAAATATTTAAGTTTTTGTTT  828

seq1  TGGAGACAGGATAACATATAGCCCAGGTTGGCCTCGAACTTGCTGTATAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGGATAACATATAGCCCAGGTTGGCCTCGAACTTGCTGTATAA  878

seq1  CCATACTTAGCTTTGAACTCCTGATCCTTCCTGACCCACCTCCCAAGTGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTTAGCTTTGAACTCCTGATCCTTCCTGACCCACCTCCCAAGTGT  928

seq1  GGTGTCACAGGCCAGCATTACCACCAACCCAGCAAGAAGTCTTACATTCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCACAGGCCAGCATTACCACCAACCCAGCAAGAAGTCTTACATTCA  978

seq1  TACAGAGACTTAGAGTTCATATTTTTCTAGTGTGGCTTCATTTCTGCCCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGACTTAGAGTTCATATTTTTCTAGTGTGGCTTCATTTCTGCCCC  1028

seq1  AAGTTATCCTTGCATTAACATTTCTCTTTACTGTGGCTGTAATGACAATG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCCTTGCATTAACATTTCTCTTTACTGTGGCTGTAATGACAATG  1078

seq1  AATTC  1093
      |||||
seq2  AATTC  1083