BAC Information

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BAC

Clone NameB6Ng01-195G22
Chromosome11 (Build37)
Map Location 61,435,448 - 61,561,815
singlet/doubletdoublet
Overlap geneGrap, Slc5a10, 2310040C09Rik, Prpsap2
Upstream geneLOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2
Downstream geneUlk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195G22.bB6Ng01-195G22.g
ACCGA017853GA017854
length1,061955
definitionB6Ng01-195G22.b B6Ng01-195G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,435,448 - 61,436,494)(61,561,216 - 61,561,815)
sequence
gaattcagggccagcctggtctacagagtgagttccaggacagccagggc
tacacagagaaaccctgtctcgaaaaaaaaaaaaaaaaaaccttaaaaac
aaaaacaaaaacaaaaactatgcctccatagacattcctacaggccagtc
tgatggaggcattttctcagttgctgttccctcttctcagatgactctag
cttgtcgcagaaaaactcaccagcatagtgtatgtggttgtgtgtctgca
actgatcttttaaaataaatttgtttttgttgttggttctgttttaagac
aggggctggagatatggctaagggattaagcaggcctggattctcacgca
cacactgtggctcctaaccacctgtaactccagtttcaaggggcccaata
ccctcttctggcttttgtaggcaccaggtatgtttgtggtacacatatat
atgtgcaggcaaacactcatacacacaaaaccatctagaatctttaaaaa
aaaacccaaaaacaaaaacaaaaaaaataatgcaaagtggttcctgcgga
catgtgaggacgagagtgtgaatccaagcagctgtgtaagagctggaggg
tgctggagagatggcgcagcactcaagtgcactttctgttcttacagagg
acccaaggtcagttcccagcatccacatggcaactcccacccagtaactc
catttctaggagatccattgcttcttctgatctgcatgggttcctgcatg
cacacggtggacatacacatataacaaatgaactacctacctaactaaat
atttttaaaagtccaaagtggtggtttgtgtctgtaacctcagagctggg
agatgcaaagaaccccagtaacttgctagacagctggtctagcagaaacc
gagaactttagggttcaatgggaaaactttatctcaaaaagtaaggtggg
ggagttacaagaggaagacactggactttgaactgcttggctttcaggtg
gtgccacatacatgttactaccttattatattcacacacatacattgcac
ccattacgggg
gaattctgcttccaattcactaagatacaaataataacaacttttgttat
gttttttcctgaattacttgtaacattcatgttgatatgtcatatttttt
cagtaatattcaagtttcaagaggagaaaaataattttcagtcttttaga
ctttaatacaggaaccattttgattttacaaatagttatatttttataaa
ccacatgttcttttctgttaaacatttttaggtaacagcctaagtattgt
aaaaaccatttttatgttttttaattcgtgtacaggttattatgtgtgtg
ggtcaaggggcaaatttgggcattgttctcaggtgacatccacctttttt
ttgagacaggatctctcattggcctggagctctccgtgtgggcaaggcag
ctttacttctgcttcctgtttctcagtacctctttccttttccctggtac
cgtttctagtctcacagcccatacctccatattaatacatgcaagtatta
aagggtaggatccacatatgaaagaagacgtgcatatttgtctttctgag
cctaaattattgttcaatataattttaagattaatttttttacaaacgta
atttttctttatagctggataaaattccattgtgtacatgtgctacaata
tcattatctgttcatctgttgatggacatcaggttgattccgttttcttg
tgtttgtgagtacagcagcagtatatgtggatatgcaagtgtttgtgtgg
cagagcgtagagacctcttcatgtctgccaagcagtggttcaactgggat
aggtggtagttctttttttattgtatatctctattttggctgaattattt
ctgtgtaccacatgtttgtagtaccctcagccagaagagggcattagatc
ctctgggaactagagttccagctgtcagttgcccgatgggttgctggaac
tgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61435448_61436494
seq2: B6Ng01-195G22.b_45_1105

seq1  GAATTCAGGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  50

seq1  TACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAACCTTAAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAAAAACCTTAAAAAC  100

seq1  AAAAACAAAAACAAAAACTATGCCTCCATAGACATTCCTACAGGCCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAACAAAAACTATGCCTCCATAGACATTCCTACAGGCCAGTC  150

seq1  TGATGGAGGCATTTTCTCAGTTGCTGTTCCCTCTTCTCAGATGACTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGGCATTTTCTCAGTTGCTGTTCCCTCTTCTCAGATGACTCTAG  200

seq1  CTTGTCGCAGAAAAACTCACCAGCATAGTGTATGTGGTTGTGTGTCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCGCAGAAAAACTCACCAGCATAGTGTATGTGGTTGTGTGTCTGCA  250

seq1  ACTGATCTTTTAAAATAAATTTGTTTTTGTTGTTGGTTCTGTTTTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCTTTTAAAATAAATTTGTTTTTGTTGTTGGTTCTGTTTTAAGAC  300

seq1  AGGGGCTGGAGATATGGCTAAGGGATTAAGCAGGCCTGGATTCTCACGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGAGATATGGCTAAGGGATTAAGCAGGCCTGGATTCTCACGCA  350

seq1  CACACTGTGGCTCCTAACCACCTGTAACTCCAGTTTCAAGGGGCCCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTGGCTCCTAACCACCTGTAACTCCAGTTTCAAGGGGCCCAATA  400

seq1  CCCTCTTCTGGCTTTTGTAGGCACCAGGTATGTTTGTGGTACACATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGGCTTTTGTAGGCACCAGGTATGTTTGTGGTACACATATAT  450

seq1  ATGTGCAGGCAAACACTCATACACACAAAACCATCTAGAATCTTTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGGCAAACACTCATACACACAAAACCATCTAGAATCTTTAAAAA  500

seq1  AAAACCCAAAAACAAAAACAAAAAAAATAATGCAAAGTGGTTCCTGCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAAAACAAAAACAAAAAAAATAATGCAAAGTGGTTCCTGCGGA  550

seq1  CATGTGAGGACGAGAGTGTGAATCCAAGCAGCTGTGTAAGAGCTGGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGGACGAGAGTGTGAATCCAAGCAGCTGTGTAAGAGCTGGAGGG  600

seq1  TGCTGGAGAGATGGCGCAGCACTCAAGTGCACTTTCTGTTCTTACAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGAGATGGCGCAGCACTCAAGTGCACTTTCTGTTCTTACAGAGG  650

seq1  ACCCAAGGTCAGTTCCCAGCATCCACATGGCAACTCCCACCCAGTAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGGTCAGTTCCCAGCATCCACATGGCAACTCCCACCCAGTAACTC  700

seq1  CATTTCTAGGAGATCCATTGCTTCTTCTGATCTGCATGGGTTCCTGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAGGAGATCCATTGCTTCTTCTGATCTGCATGGGTTCCTGCATG  750

seq1  CACACGGTGGACATACACATATAACAAATGAACTACCTACCTAACTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGTGGACATACACATATAACAAATGAACTACCTACCTAACTAAAT  800

seq1  ATTTTTAAAAGTCCAAAGTGGTGGTTTGTGTCTGTAACCTCAGAGCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAAGTCCAAAGTGGTGGTTTGTGTCTGTAACCTCAGAGCTGGG  850

seq1  AGATGCAAAGAACCCCAGT-ACTTGCTAGACAGCTGGTCTAGCAGAAACC  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGATGCAAAGAACCCCAGTAACTTGCTAGACAGCTGGTCTAGCAGAAACC  900

seq1  GAGAAC-TTAGGGTTCAATGGGAAAAC-TTATCTCAAAAAGTAAGGT-GG  946
      |||||| |||||||||||||||||||| ||||||||||||||||||| ||
seq2  GAGAACTTTAGGGTTCAATGGGAAAACTTTATCTCAAAAAGTAAGGTGGG  950

seq1  GGAGTTAC-AGAGGAAGACACTGGAC-TTGAACTGC-TGGCTTCCAGGT-  992
      |||||||| ||||||||||||||||| ||||||||| |||||| ||||| 
seq2  GGAGTTACAAGAGGAAGACACTGGACTTTGAACTGCTTGGCTTTCAGGTG  1000

seq1  GTG-CACATACATG----TACATACTTATATATCACACACATACA-TGCA  1036
      ||| ||||||||||    ||| |  |||||| ||||||||||||| ||||
seq2  GTGCCACATACATGTTACTACCTTATTATAT-TCACACACATACATTGCA  1049

seq1  CACA-TACGGGG  1047
      | || |||||||
seq2  CCCATTACGGGG  1061

seq1: chr11_61561216_61561815
seq2: B6Ng01-195G22.g_66_665 (reverse)

seq1  TACGTTTGTAAAAAAATTAATCTTAAAATTATATTGAACAATAATTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTGTAAAAAAATTAATCTTAAAATTATATTGAACAATAATTTAGG  50

seq1  CTCAGAAAGACAAATATGCACGTCTTCTTTCATATGTGGATCCTACCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGACAAATATGCACGTCTTCTTTCATATGTGGATCCTACCCTT  100

seq1  TAATACTTGCATGTATTAATATGGAGGTATGGGCTGTGAGACTAGAAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTGCATGTATTAATATGGAGGTATGGGCTGTGAGACTAGAAACG  150

seq1  GTACCAGGGAAAAGGAAAGAGGTACTGAGAAACAGGAAGCAGAAGTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGGGAAAAGGAAAGAGGTACTGAGAAACAGGAAGCAGAAGTAAAG  200

seq1  CTGCCTTGCCCACACGGAGAGCTCCAGGCCAATGAGAGATCCTGTCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGCCCACACGGAGAGCTCCAGGCCAATGAGAGATCCTGTCTCAA  250

seq1  AAAAAAGGTGGATGTCACCTGAGAACAATGCCCAAATTTGCCCCTTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGTGGATGTCACCTGAGAACAATGCCCAAATTTGCCCCTTGACC  300

seq1  CACACACATAATAACCTGTACACGAATTAAAAAACATAAAAATGGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATAATAACCTGTACACGAATTAAAAAACATAAAAATGGTTTTT  350

seq1  ACAATACTTAGGCTGTTACCTAAAAATGTTTAACAGAAAAGAACATGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTTAGGCTGTTACCTAAAAATGTTTAACAGAAAAGAACATGTGG  400

seq1  TTTATAAAAATATAACTATTTGTAAAATCAAAATGGTTCCTGTATTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAAATATAACTATTTGTAAAATCAAAATGGTTCCTGTATTAAAG  450

seq1  TCTAAAAGACTGAAAATTATTTTTCTCCTCTTGAAACTTGAATATTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGACTGAAAATTATTTTTCTCCTCTTGAAACTTGAATATTACTG  500

seq1  AAAAAATATGACATATCAACATGAATGTTACAAGTAATTCAGGAAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATGACATATCAACATGAATGTTACAAGTAATTCAGGAAAAAAC  550

seq1  ATAACAAAAGTTGTTATTATTTGTATCTTAGTGAATTGGAAGCAGAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAAGTTGTTATTATTTGTATCTTAGTGAATTGGAAGCAGAATTC  600