BAC Information

Click to search

BAC

Clone NameB6Ng01-196E18
Chromosome11 (Build37)
Map Location 33,445,993 - 33,587,872
singlet/doubletdoublet
Overlap geneGabrp, D130052B06Rik, Kcnip1
Upstream geneStk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269
Downstream geneKcnmb1, Lcp2, Foxi1, Dock2, EG574403, Dock2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196E18.bB6Ng01-196E18.g
ACCGA018475GA018476
length949449
definitionB6Ng01-196E18.b B6Ng01-196E18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,586,951 - 33,587,872)(33,445,993 - 33,446,446)
sequence
gattcatttcagggtgggaatttttttttaaaagtacaagattaagcagt
gtaatcagctgctgctgaggattggaaacgcaataaataataatagcgtt
gagagctgtttttaataactcaccagtgtaatttagcctctgcttcttgg
agcatatgtaaaatatgtcagaacgggtgtactggcaaatgcctcattgc
caacctctgaagacaaatgtcttcccaggagggagggggatggaggagaa
ctcgggggactctgttgaaaatgagatgcaggaaggcaggcattgttcat
ctggactctgctaattccacactgtgacggtccacgttgcaggtctcact
gggttgtcttataaggtggacgggctgacagcaaaaaccctagaggaggg
tacttctaatccaatggacagggagttgttttgtggactgtagaaaacac
gggtatgcatgtagttgggtgttctgattcatgggtcattctgggcttgt
cccagtacagcaggtccccggggatgggataccatagcagtattggtttt
agtttttgcatgcctggatgcttctgcaacccgctgagaacttgttgttc
cacatgtttggtaaattctacctgctagtagttcctggtggacttgcccc
tgcctcctcgggtccagattgtcaccaatgggaactaggagtccttagaa
tctcagggaagacaacttgaccaccctcagaatgaaaaggatcattactt
gtcagacatacattgttctaataaggacgttgactgcaaaacctgaatac
ttaagtcacctgtcaccttatcctccatccacaccctggtgaaaggcttc
acaggaacttctactcctgatgaaggatgagaaacctggaaccttgaata
tctagtctaaagcagagaatttgaattacctgtctttggggtcggctgg
gaattccagcaactaggagatggtttgcactaagatgctcactagagagt
tggtgccctgacttttaccaggtgccagtcacatagcaccttttgcctat
tgtgctccaacattctagactgatggctttggcagaggactaaggaatct
tagactgtttttattggctagaaaatgatggaacctccctcagacccgga
ttgccccatgttagccgaggaccaaccctacaaatgcattctaaactcca
taattactacactcccttccctataagactgtatagagaagagataaaac
aaatattttcttttttgttttgttttgtttttttggagacagggtttctc
tgtgtagccctggctgcctggaactcactttgtagaccaggctggcctca
aactcaaaatcgcctgctctacctcccgagtgctgggataaaggcgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_33586951_33587872
seq2: B6Ng01-196E18.b_43_990 (reverse)

seq1  CCAGCCGACCCCAAGGACA-GTAATTTACAATCTCTTGCTTTAGACTAGA  49
      |||||||||||||| |||| |||||| | | |||| ||||||||||||||
seq2  CCAGCCGACCCCAAAGACAGGTAATTCAAATTCTC-TGCTTTAGACTAGA  49

seq1  TA-TCTAGGTTCCAGTTTCCTCATCCTTCATCAGGA--TGAAGTCCCTGA  96
      || || ||||||||| || |||||||||||||||||   ||||| |||| 
seq2  TATTCAAGGTTCCAGGTTTCTCATCCTTCATCAGGAGTAGAAGTTCCTG-  98

seq1  TGAGCCATATCA-CAGTGTTGTGATGGA-GATAAAGTGACAGGTGACTTA  144
      |||  | | ||| ||| ||   |||||| ||||| |||||||||||||||
seq2  TGAAGCCTTTCACCAGGGTGTGGATGGAGGATAAGGTGACAGGTGACTTA  148

seq1  AGTA-TCAGGTTTTGCAGTCAACGTCCTTA-TAGAACATTGTATGTCTGA  192
      |||| ||||||||||||||||||||||||| ||||||| |||||||||||
seq2  AGTATTCAGGTTTTGCAGTCAACGTCCTTATTAGAACAATGTATGTCTGA  198

seq1  C-AGTAATGATCC-TTTCATCTTGAGGGT-GTCAAGTTGTC-TCCCTGAG  238
      | ||||||||||| ||||||  ||||||| ||||||||||| ||||||||
seq2  CAAGTAATGATCCTTTTCATTCTGAGGGTGGTCAAGTTGTCTTCCCTGAG  248

seq1  A-TCTAA-GACTCCTAGTT-CCATT-GTGACAATCTGGACCCGAGGA-GC  283
      | ||||| ||||||||||| ||||| ||||||||||||||||||||| ||
seq2  ATTCTAAGGACTCCTAGTTCCCATTGGTGACAATCTGGACCCGAGGAGGC  298

seq1  AGGG--CAGTCCA-CAGGAACTACTAGCAGTTAGAATTTACCAAACATGT  330
      ||||   |||||| |||||||||||||||| |||||||||||||||||||
seq2  AGGGGCAAGTCCACCAGGAACTACTAGCAGGTAGAATTTACCAAACATGT  348

seq1  GGAACAACAAG-TCTCAGC-GGTTGCAGAAGCATCCAGGCATGCAAAAAC  378
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GGAACAACAAGTTCTCAGCGGGTTGCAGAAGCATCCAGGCATGCAAAAAC  398

seq1  TAAAACCAATACTGCTATGGTATCCCATCCCCGGGGACCTGCTGTACT-G  427
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAAAACCAATACTGCTATGGTATCCCATCCCCGGGGACCTGCTGTACTGG  448

seq1  GACAAG-CCAGAATGA-CCATGAATCAGAACA-CCAACTACATGCATA-C  473
      |||||| ||||||||| ||||||||||||||| ||||||||||||||| |
seq2  GACAAGCCCAGAATGACCCATGAATCAGAACACCCAACTACATGCATACC  498

seq1  CGTG-TCTCTACAGTCCAC-AAACAACTCCCTGTCCATTGGATTAGAAGT  521
      |||| | |||||||||||| ||||||||||||||||||||||||||||||
seq2  CGTGTTTTCTACAGTCCACAAAACAACTCCCTGTCCATTGGATTAGAAGT  548

seq1  ACCCTCCTCTAGGGTTTTTGCTGTCAGCCCGTCCACCTTATAAGACAACC  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCTCTAGGGTTTTTGCTGTCAGCCCGTCCACCTTATAAGACAACC  598

seq1  CAGTGAGACCTGCAACGTGGACCGTCACAGTGTGGAATTAGCAGAGTCCA  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGACCTGCAACGTGGACCGTCACAGTGTGGAATTAGCAGAGTCCA  648

seq1  GATGAACAATGCCTGCCTTCCTGCATCTCATTTTCAACAGAGTCCCCCGA  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACAATGCCTGCCTTCCTGCATCTCATTTTCAACAGAGTCCCCCGA  698

seq1  GTTCTCCTCCATCCCCCTCCCTCCTGGGAAGACATTTGTCTTCAGAGGTT  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTCCATCCCCCTCCCTCCTGGGAAGACATTTGTCTTCAGAGGTT  748

seq1  GGCAATGAGGCATTTGCCAGTACACCCGTTCTGACATATTTTACATATGC  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGAGGCATTTGCCAGTACACCCGTTCTGACATATTTTACATATGC  798

seq1  TCCAAGAAGCAGAGGCTAAATTACACTGGTGAGTTATTAAAAACAGCTCT  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAGCAGAGGCTAAATTACACTGGTGAGTTATTAAAAACAGCTCT  848

seq1  CAACGCTATTATTATTTATTGCGTTTCCAATCCTCAGCAGCAGCTGATTA  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCTATTATTATTTATTGCGTTTCCAATCCTCAGCAGCAGCTGATTA  898

seq1  CACTGCTTAATCTTGTACTTTTAAAAAAAAATTTCCCACCCTGAAATGAA  921
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACTGCTTAATCTTGTACTTTTAAAAAAAAA-TTCCCACCCTGAAATGAA  947

seq1  T  922
      |
seq2  T  948

seq1: chr11_33445993_33446446
seq2: B6Ng01-196E18.g_62_510

seq1  GAATTCCAGCAACTAGGAGATGGTTTGCACTAAGATGCTCACTAGAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAACTAGGAGATGGTTTGCACTAAGATGCTCACTAGAGAGT  50

seq1  TGGTGCCCTGACTTTTACCAGGTGCCAGTCACATAGCACCTTTTGCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCTGACTTTTACCAGGTGCCAGTCACATAGCACCTTTTGCCTAT  100

seq1  TGTGCTCCAACATTCTAGACTGATGGCTTTGGCAGAGGACTAAGGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCAACATTCTAGACTGATGGCTTTGGCAGAGGACTAAGGAATCT  150

seq1  TAGACTGTTTTTATTGGCTAGAAAATGATGGAACCTCCCTCAGACCCGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGTTTTTATTGGCTAGAAAATGATGGAACCTCCCTCAGACCCGGA  200

seq1  TTGCCCCATGTTAGCCGAGGACCAACCCTACAAATGCATTCTAAACTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCATGTTAGCCGAGGACCAACCCTACAAATGCATTCTAAACTCCA  250

seq1  TAATTACTACACTCCCTTCCCTATAAGACTGTATAGAGAAGAGATAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTACACTCCCTTCCCTATAAGACTGTATAGAGAAGAGATAAAAC  300

seq1  AAATATTTTCTTTTTTGTTTTGTTTTGTTTTTTTGGAGACAGGGTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTCTTTTTTGTTTTGTTTTGTTTTTTTGGAGACAGGGTTTCTC  350

seq1  TGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  400
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTG-CCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  399

seq1  AAACTCAGAAATCCGCCTGCCTCTACCTCCCGAGTGCTGGGATTAAAGGC  450
      ||||||| |||| |||||| |||||||||||||||||||||| |||||||
seq2  AAACTCA-AAAT-CGCCTG-CTCTACCTCCCGAGTGCTGGGA-TAAAGGC  445

seq1  GTGC  454
      ||||
seq2  GTGC  449