BAC Information

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BAC

Clone NameB6Ng01-196K07
Chromosome11 (Build37)
Map Location 96,426,965 - 96,587,097
singlet/doubletdoublet
Overlap geneSkap1
Upstream geneNgfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775
Downstream geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196K07.bB6Ng01-196K07.g
ACCGA018730GA018731
length1,150861
definitionB6Ng01-196K07.b B6Ng01-196K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,585,970 - 96,587,097)(96,426,965 - 96,427,825)
sequence
gaattctgttcctctctccctctttggataagatctgggggtaggcttga
aaaatgttagcagttctgtcagagaaagtgcagcatcaagtgacagggtc
tgcgggatagagaagagtcctcagatgtgtcagccatagcactttggtgg
gaaggcagccgggacaggtctttccctcccaaacacatgacacctgagaa
aaactaaaagacacatatgtacatagctcatctgtgacccaagaatttac
tctgtcccagccttttaaatgccttcattcaggctgttagcccttccccc
agatctctatattttgttgttataaaacttagagatgacattgggaaatt
acatatgtgctgcagtttcaatagctcctttggaggaaaggcactatata
aattcaataaataaataagtaaacacaaataataaaaatcactgcctcag
attctgcagagagagcgaaaagacctcctgttttttaatcagcaagtcac
caatcattataactggtggaagtacaagcctcagaaacatatttagagct
agcctgatgttaacgacacctatttgggaagcagaatgtatgaggaacaa
aagacttctttaaaaaaaaaatcctaattgaattatacctgttgggatag
ctaagaaataaatctccttttatctcccagatagagcctgagtggagggg
caggcaggagaaaatgagaggagggaggagtctgggagggaaagccagac
tttgccaggacactggcacttcctgaatagagtttaatacaatgttggcc
acagggaagtttatcccacccaaagggtccgtgtgggagctgtttctccc
tattgctggacacagaagtagatagagaaaagctttattttgggaacatg
ctagtcacaacagatttttctgtatggcaagtagaaagaatagaaattac
gtttcaggtctgggagagttgatttcagccattaaaggctaaagctcaca
acccaaacttcggaagaatgggtattagaggatttaatgtcattggggct
aatcatcaaggagagctaaactttcttcaaagtttaaggtatcctggaac
tgccttcatgaactctggactgctctttgccctctttcccaagagagaag

gaattcatactcctcctgcctccacctctggtgctgagatttcagacata
taccaccacactctttctgtgcactctattgagtataaatacgttataag
agaacacgtagagtgagcaccactttttgaaatatacatctctgtttgca
ttcaaagaacctataatgcatgccactaaagtattttggcatactctcat
ttcacatatgggtgtgatatatttgtattggcttatgattccaagactga
aagctatttcttttgggattcctgcagatgtgcacatctttagaatcaga
agtttgggttctaggggtatcttctaaggaaatcagctaatcaggctcct
cgaggatcaaggaactggccgagcctaactgcttaattacgtgtggattg
gtttaataaattacagtgcagcctcgtgatggaataccctgcagccatta
aaagccaggttgtcagtagaggagccattattgtcataggagaatgttgg
tgatatatgaaaggcaggttgcagaacagcacagagcagggctgtgccag
gatgctcatgggcagggtttttctgggttctaggattatggaattttttt
ttaatgcttttctgcatttttctaagtttgacttttcagtgtattgattt
taaaacaacaagaagtcatgttggccataggtcagggtgggtacaggcct
ttaatccctggatgcaaggaggtggagactggcagatctctttgcgtttg
aagccatcgaggtctaccaagcaagctccaggccaggcaggaatatacag
ggagaccctgtctcaacaaacaacaacaaaatccaggagtgggtgtgtgt
gtgtggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96585970_96587097
seq2: B6Ng01-196K07.b_46_1195 (reverse)

seq1  CTTCTC-CCTGGGA---AGAGCAAAGA-CAGT-CAGAGGTCATGAAAGCA  44
      |||||| | |||||   || ||||||| |||| ||||| ||||||| |||
seq2  CTTCTCTCTTGGGAAAGAGGGCAAAGAGCAGTCCAGAGTTCATGAAGGCA  50

seq1  CT--CAGGATACC-TAAACTTTG-AGAATG-TTAGCT---CCTGATGATT  86
       |  ||||||||| ||||||||| |||| | ||||||   | ||||||||
seq2  GTTCCAGGATACCTTAAACTTTGAAGAAAGTTTAGCTCTCCTTGATGATT  100

seq1  AGCCC--ATGACATTAAATCCTCTAA-AACCAATCTTCCGAAGTTTGGGT  133
      |||||  ||||||||||||||||||| | ||| |||||||||||||||||
seq2  AGCCCCAATGACATTAAATCCTCTAATACCCATTCTTCCGAAGTTTGGGT  150

seq1  TGTGAGCTTTAGCCTTTAATGGCTGAAATC-ACTCT-CCAGCCCTGAAAC  181
      |||||||||||||||||||||||||||||| ||||| |||| ||||||||
seq2  TGTGAGCTTTAGCCTTTAATGGCTGAAATCAACTCTCCCAGACCTGAAAC  200

seq1  CTAATTTCTATTCTTTTCTACTTGCCATACAGAAAAATCTGTTGTGACCT  231
       |||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  GTAATTTCTATTC-TTTCTACTTGCCATACAGAAAAATCTGTTGTGA-CT  248

seq1  AGCATGT--CCCAAATAAGGCTTTTCTCTATCTACTTCTGTGTCCAGC-A  278
      |||||||  || |||||| ||||||||||||||||||||||||||||| |
seq2  AGCATGTTCCCAAAATAAAGCTTTTCTCTATCTACTTCTGTGTCCAGCAA  298

seq1  TAGGGAGAAACAGCTCCCACACGGACCCCTTGGGTGGGAT-AACTT-CCT  326
      |||||||||||||||||||||||||||| ||||||||||| ||||| |||
seq2  TAGGGAGAAACAGCTCCCACACGGACCCTTTGGGTGGGATAAACTTCCCT  348

seq1  GTGGCCAACATTGTATTAAACTCTATTCAGGAAGTGCCAGTGTCCTGGCA  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAACATTGTATTAAACTCTATTCAGGAAGTGCCAGTGTCCTGGCA  398

seq1  AAGTCTGGCTTTCCCTCCCAGACTCCTCCCTCCTCTCATTTTCTCCTGCC  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGCTTTCCCTCCCAGACTCCTCCCTCCTCTCATTTTCTCCTGCC  448

seq1  TGCCCCTCCACTCAGGCTCTATCTGGGAGATAAAAGGAGATTTATTTCTT  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTCCACTCAGGCTCTATCTGGGAGATAAAAGGAGATTTATTTCTT  498

seq1  AGCTATCCCAACAGGTATAATTCAATTAGGATTTTTTTTTTAAAGAAGTC  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCCAACAGGTATAATTCAATTAGGATTTTTTTTTTAAAGAAGTC  548

seq1  TTTTGTTCCTCATACATTCTGCTTCCCAAATAGGTGTCGTTAACATCAGG  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCTCATACATTCTGCTTCCCAAATAGGTGTCGTTAACATCAGG  598

seq1  CTAGCTCTAAATATGTTTCTGAGGCTTGTACTTCCACCAGTTATAATGAT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCTAAATATGTTTCTGAGGCTTGTACTTCCACCAGTTATAATGAT  648

seq1  TGGTGACTTGCTGATTAAAAAACAGGAGGTCTTTTCGCTCTCTCTGCAGA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTTGCTGATTAAAAAACAGGAGGTCTTTTCGCTCTCTCTGCAGA  698

seq1  ATCTGAGGCAGTGATTTTTATTATTTGTGTTTACTTATTTATTTATTGAA  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGCAGTGATTTTTATTATTTGTGTTTACTTATTTATTTATTGAA  748

seq1  TTTATATAGTGCCTTTCCTCCAAAGGAGCTATTGAAACTGCAGCACATAT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAGTGCCTTTCCTCCAAAGGAGCTATTGAAACTGCAGCACATAT  798

seq1  GTAATTTCCCAATGTCATCTCTAAGTTTTATAACAACAAAATATAGAGAT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTCCCAATGTCATCTCTAAGTTTTATAACAACAAAATATAGAGAT  848

seq1  CTGGGGGAAGGGCTAACAGCCTGAATGAAGGCATTTAAAAGGCTGGGACA  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGAAGGGCTAACAGCCTGAATGAAGGCATTTAAAAGGCTGGGACA  898

seq1  GAGTAAATTCTTGGGTCACAGATGAGCTATGTACATATGTGTCTTTTAGT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATTCTTGGGTCACAGATGAGCTATGTACATATGTGTCTTTTAGT  948

seq1  TTTTCTCAGGTGTCATGTGTTTGGGAGGGAAAGACCTGTCCCGGCTGCCT  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAGGTGTCATGTGTTTGGGAGGGAAAGACCTGTCCCGGCTGCCT  998

seq1  TCCCACCAAAGTGCTATGGCTGACACATCTGAGGACTCTTCTCTATCCCG  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCAAAGTGCTATGGCTGACACATCTGAGGACTCTTCTCTATCCCG  1048

seq1  CAGACCCTGTCACTTGATGCTGCACTTTCTCTGACAGAACTGCTAACATT  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCTGTCACTTGATGCTGCACTTTCTCTGACAGAACTGCTAACATT  1098

seq1  TTTCAAGCCTACCCCCAGATCTTATCCAAAGAGGGAGAGAGGAACAGAAT  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCCTACCCCCAGATCTTATCCAAAGAGGGAGAGAGGAACAGAAT  1148

seq1  TC  1128
      ||
seq2  TC  1150

seq1: chr11_96426965_96427825
seq2: B6Ng01-196K07.g_65_925

seq1  GAATTCATACTCCTCCTGCCTCCACCTCTGGTGCTGAGATTTCAGACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTCCTCCTGCCTCCACCTCTGGTGCTGAGATTTCAGACATA  50

seq1  TACCACCACACTCTTTCTGTGCACTCTATTGAGTATAAATACGTTATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCACACTCTTTCTGTGCACTCTATTGAGTATAAATACGTTATAAG  100

seq1  AGAACACGTAGAGTGAGCACCACTTTTTGAAATATACATCTCTGTTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACGTAGAGTGAGCACCACTTTTTGAAATATACATCTCTGTTTGCA  150

seq1  TTCAAAGAACCTATAATGCATGCCACTAAAGTATTTTGGCATACTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAACCTATAATGCATGCCACTAAAGTATTTTGGCATACTCTCAT  200

seq1  TTCACATATGGGTGTGATATATTTGTATTGGCTTATGATTCCAAGACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATATGGGTGTGATATATTTGTATTGGCTTATGATTCCAAGACTGA  250

seq1  AAGCTATTTCTTTTGGGATTCCTGCAGATGTGCACATCTTTAGAATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTTCTTTTGGGATTCCTGCAGATGTGCACATCTTTAGAATCAGA  300

seq1  AGTTTGGGTTCTAGGGGTATCTTCTAAGGAAATCAGCTAATCAGGCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGTTCTAGGGGTATCTTCTAAGGAAATCAGCTAATCAGGCTCCT  350

seq1  CGAGGATCAAGGAACTGGCCGAGCCTAACTGCTTAATTACGTGTGGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGATCAAGGAACTGGCCGAGCCTAACTGCTTAATTACGTGTGGATTG  400

seq1  GTTTAATAAATTACAGTGCAGCCTCGTGATGGAATACCCTGCAGCCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAAATTACAGTGCAGCCTCGTGATGGAATACCCTGCAGCCATTA  450

seq1  AAAGCCAGGTTGTCAGTAGAGGAGCCATTATTGTCATAGGAGAATGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGGTTGTCAGTAGAGGAGCCATTATTGTCATAGGAGAATGTTGG  500

seq1  TGATATATGAAAGGCAGGTTGCAGAACAGCACAGAGCAGGGCTGTGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATGAAAGGCAGGTTGCAGAACAGCACAGAGCAGGGCTGTGCCAG  550

seq1  GATGCTCATGGGCAGGGTTTTTCTGGGTTCTAGGATTATGGAATTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCATGGGCAGGGTTTTTCTGGGTTCTAGGATTATGGAATTTTTTT  600

seq1  TTAATGCTTTTCTGCATTTTTCTAAGTTTGACTTTTCAGTGTATTGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTTTTCTGCATTTTTCTAAGTTTGACTTTTCAGTGTATTGATTT  650

seq1  TAAAACAACAAGAAGTCATGTTGGCCATAGGTCAGGGTGGGTACAGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAACAAGAAGTCATGTTGGCCATAGGTCAGGGTGGGTACAGGCCT  700

seq1  TTAATCCCTGGATGCAAGGAGGTGGAGACTGGCAGATCTCTTTGCGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCTGGATGCAAGGAGGTGGAGACTGGCAGATCTCTTTGCGTTTG  750

seq1  AAGCCATCGAGGTCTACCAAGCAAGCTCCAGGCCAGGCAGGAATATACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCGAGGTCTACCAAGCAAGCTCCAGGCCAGGCAGGAATATACAG  800

seq1  GGAGACCCTGTCTCAACAAACAACAACAAAATCCAGGAGTGGGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCTGTCTCAACAAACAACAACAAAATCCAGGAGTGGGTGTGTGT  850

seq1  GTGTGGGGGGG  861
      |||||||||||
seq2  GTGTGGGGGGG  861