BAC Information

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BAC

Clone NameB6Ng01-198L10
Chromosome11 (Build37)
Map Location 70,928,177 - 71,110,791
singlet/doubletdoublet
Overlap geneNlrp1a, Nlrp1b, Nlrp1c
Upstream geneMgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536
Downstream geneLOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198L10.bB6Ng01-198L10.g
ACCGA020240GA020241
length972957
definitionB6Ng01-198L10.b B6Ng01-198L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,928,177 - 70,929,133)(71,109,855 - 71,110,791)
sequence
gaattcactagacttctacatgttcctttgcttcatattctggatcccct
cctttgtgtggttcctcatctacgtcctttctattagcatgctatgtgct
cattttgtgcatctgtttctgactcagtccaggtgtccgaagggtgtgaa
caaatggcttgcatcttttctttttaagctgtagtgctcagcttaggaac
tgacacaaagtggggccttgggaattcagataggcttcctctctttgatg
tgagaacacctgctttcctttggaccacatttcttgagtctcatgatgga
actggaaaactggaaggaaaagagctcaggagaggcagttgagaatgact
tcatgatggtatgttaagcatgatcacacactctgtatactatagctgtg
ttggttcacatggtccttgaattcttccaaggatacaaggatacaaggag
gaccatagggagaggagagagaagggatagttgacactctccctcccaga
gagagagacagagagagacagagagagacagagagagagacagagagaga
cagagagagagacagagagagagagacagataaagacagagacagaaaga
cagagatagagggacagagacaaacagagagagacacagatacacagaga
cacacagacacacagacacacagagacacagagagagatagagatacaga
taaattcacaacaccaaagaaatattagggaaaccaagtagtaaatttca
aagaatgattattttaaaaagtatttatatctttttaatttgtatgtatg
atagtttgcctgcttgtctgtgccttatatgaatgtaggagctggcagag
cataggagctgggattggtatctttcaggaacttccagtttaatgttagt
gtggggccatctaatgtggggtgctttggaaatggatccaaccttttttt
tgaagaagcagccaaatgtttc
gaattcaagttctctaaaatggagtcagaacttaaaaaaggattttgtct
ctcaggatggcactaagccttccacatggggcttctccaaattctaggtc
tgtcccccagtgtcctgggatattcctggatttgttgtgtagcctaggca
ttggaaccttgttgatgggcacttaggtgttgggcctttctggacatctg
ggaacctggtctctccaaggtatccttagagctccaagacaggtcaggag
gaggaggagaaggagaatgacaaggagaaggacaagaacaaggacaagga
caaggagaaacaacaaaccaaacctgatggctctagctgaactcccaatt
aattagaaataaccagtgggccatggaatgtctccctttgccctggatgg
agtattggtggaacttttgagaccctctacatcctcacactaaaattcta
cttaccagatagaaacgtcttcaaacaaaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaggaaaggaaagaaaagaaagtaa
ggaaaggaaagaaaaatgcttggagctttcaagtgcagctgttcacctca
ggagtttacagagtggaaagcacttcctctggagccttgagtcagctagg
ttagctatcccaaagatgtgcatacccactggggtagcttaccagcctcc
cgagggtaaagatcccagcttcagcagaatttgggtaggctgtctatttc
actgcagattttcaaggagaaaaagacaaagtccacattgttcaattaaa
gcaagctgtgtttttgtgggtgcactgaagactacacagctggctgcctt
cacccttaagtcaggttttttaagagaacagccccctgttggcctcttga
tgtccctcttctaggagaagataaggtgtttcttaggggtgagatgttta
acctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70928177_70929133
seq2: B6Ng01-198L10.b_46_1015

seq1  GAATTCACTAGACTTCTACATGTTCCTTTGCTTCATATTCTGGATCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGACTTCTACATGTTCCTTTGCTTCATATTCTGGATCCCCT  50

seq1  CCTTTGTGTGGTTCCTCATCTACGTCCTTTCTATTAGCATGCTATGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTGTGGTTCCTCATCTACGTCCTTTCTATTAGCATGCTATGTGCT  100

seq1  CATTTTGTGCATCTGTTTCTGACTCAGTCCAGGTGTCCGAAGGGTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTGCATCTGTTTCTGACTCAGTCCAGGTGTCCGAAGGGTGTGAA  150

seq1  CAAATGGCTTGCATCTTTTCTTTTTAAGCTGTAGTGCTCAGCTTAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCTTGCATCTTTTCTTTTTAAGCTGTAGTGCTCAGCTTAGGAAC  200

seq1  TGACACAAAGTGGGGCCTTGGGAATTCAGATAGGCTTCCTCTCTTTGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAAAGTGGGGCCTTGGGAATTCAGATAGGCTTCCTCTCTTTGATG  250

seq1  TGAGAACACCTGCTTTCCTTTGGACCACATTTCTTGAGTCTCATGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACACCTGCTTTCCTTTGGACCACATTTCTTGAGTCTCATGATGGA  300

seq1  ACTGGAAAACTGGAAGGAAAAGAGCTCAGGAGAGGCAGTTGAGAATGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAACTGGAAGGAAAAGAGCTCAGGAGAGGCAGTTGAGAATGACT  350

seq1  TCATGATGGTATGTTAAGCATGATCACACACTCTGTATACTATAGCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGGTATGTTAAGCATGATCACACACTCTGTATACTATAGCTGTG  400

seq1  TTGGTTCACATGGTCCTTGAATTCTTCCAAGGATACAAGGATACAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCACATGGTCCTTGAATTCTTCCAAGGATACAAGGATACAAGGAG  450

seq1  GACCATAGGGAGAGGAGAGAGAAGGGATAGTTGACACTCTCCCTCCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAGGGAGAGGAGAGAGAAGGGATAGTTGACACTCTCCCTCCCAGA  500

seq1  GAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGACAGAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACAGAGAGAGACAGAGAGAGACAGAGAGAGAGACAGAGAGAGA  550

seq1  CAGAGAGAGAGACAGAGAGAGAGAGACAGATAAAGACAGAGACAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGAGACAGAGAGAGAGAGACAGATAAAGACAGAGACAGAAAGA  600

seq1  CAGAGATAGAGGGACAGAGACAAACAGAGAGAGACACAGATACACAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAGAGGGACAGAGACAAACAGAGAGAGACACAGATACACAGAGA  650

seq1  CACACAGACACACAGACACACAGAGACACAGAGAGAGATAGAGATACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACACACAGACACACAGAGACACAGAGAGAGATAGAGATACAGA  700

seq1  TAAATTCACAACACCAAAGAAATATTAGGGAAACCAAGTAGTAAATTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCACAACACCAAAGAAATATTAGGGAAACCAAGTAGTAAATTTCA  750

seq1  AAGAATGATTATTTTAAAAAGTATTTATATCTTTTTAATTTGTATGTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGATTATTTTAAAAAGTATTTATATCTTTTTAATTTGTATGTATG  800

seq1  ATAGTTTGCCTGCTTGTCTGTGCCTTATATGAATGTAGGAGCTGGCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGCCTGCTTGTCTGTGCCTTATATGAATGTAGGAGCTGGCAGAG  850

seq1  CATAGGAGCTGGGATTGGTATC-TTCAGGAAC-TCCAGTT--AAGGTAGT  896
      |||||||||||||||||||||| ||||||||| |||||||  | | ||||
seq2  CATAGGAGCTGGGATTGGTATCTTTCAGGAACTTCCAGTTTAATGTTAGT  900

seq1  GT-GGGCCATCTAATGT-GGGTGCTT--GGAATGGATCCA---CATTTTT  939
      || |||||||||||||| ||||||||  | ||||||||||     |||||
seq2  GTGGGGCCATCTAATGTGGGGTGCTTTGGAAATGGATCCAACCTTTTTTT  950

seq1  TGAAG-AGCAG-CAAATGTT  957
      ||||| ||||| ||||||||
seq2  TGAAGAAGCAGCCAAATGTT  970

seq1: chr11_71109855_71110791
seq2: B6Ng01-198L10.g_65_1012 (reverse)

seq1  AACATCTCACCCCTATG-AACACCTTATC-TCTCCTAGAAGAGGGACATC  48
      ||||||||||||||| | ||||||||||| ||||||||||||||||||||
seq2  AACATCTCACCCCTAAGAAACACCTTATCTTCTCCTAGAAGAGGGACATC  50

seq1  AAGAGGCCAACA-GGGGCTGTTCTCTT--AAAACCTGACTT-AGGGTGAA  94
      |||||||||||| ||||||||||||||  |||||||||||| ||||||||
seq2  AAGAGGCCAACAGGGGGCTGTTCTCTTAAAAAACCTGACTTAAGGGTGAA  100

seq1  -GCAGCCAGCTGTGTAGTCTTCAGTGCA-CCAC-AAAACACAGCTTGCTT  141
       ||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  GGCAGCCAGCTGTGTAGTCTTCAGTGCACCCACAAAAACACAGCTTGCTT  150

seq1  TAATTGAACAATGTGGACTTTGTC-TTTTCTCCTTGAAAATCTGCAGTGA  190
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAATTGAACAATGTGGACTTTGTCTTTTTCTCCTTGAAAATCTGCAGTGA  200

seq1  AATAGACAGCCTACCCAAATTCTGCTGAAGCTGGGATCTTTACCCTCGGG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACAGCCTACCCAAATTCTGCTGAAGCTGGGATCTTTACCCTCGGG  250

seq1  AGGCTGGTAAGCTACCCCAGTGGGTATGCACATC-TTGGGATAGCTAACC  289
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGCTGGTAAGCTACCCCAGTGGGTATGCACATCTTTGGGATAGCTAACC  300

seq1  TAGCTGACTCAAGGCTCCAGAGGAAGTGCTTTCCACTCTGTAAACTCCTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACTCAAGGCTCCAGAGGAAGTGCTTTCCACTCTGTAAACTCCTG  350

seq1  AGGTGAACAGCTGCACTTGAAAGCTCCAAGCATTTTTCTTTCCTTTCCTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACAGCTGCACTTGAAAGCTCCAAGCATTTTTCTTTCCTTTCCTT  400

seq1  ACTTTCTTTTCTTTCCTTTCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTTCTTTCCTTTCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  450

seq1  CTTTCTTTCTTTCTTTCTTTTTGTTTGAAGACGTTTCTATCTGGTAAGTA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTTTGTTTGAAGACGTTTCTATCTGGTAAGTA  500

seq1  GAATTTTAGTGTGAGGATGTAGAGGGTCTCAAAAGTTCCACCAATACTCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAGTGTGAGGATGTAGAGGGTCTCAAAAGTTCCACCAATACTCC  550

seq1  ATCCAGGGCAAAGGGAGACATTCCATGGCCCACTGGTTATTTCTAATTAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGCAAAGGGAGACATTCCATGGCCCACTGGTTATTTCTAATTAA  600

seq1  TTGGGAGTTCAGCTAGAGCCATCAGGTTTGGTTTGTTGTTTCTCCTTGTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTTCAGCTAGAGCCATCAGGTTTGGTTTGTTGTTTCTCCTTGTC  650

seq1  CTTGTCCTTGTTCTTGTCCTTCTCCTTGTCATTCTCCTTCTCCTCCTCCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTTGTTCTTGTCCTTCTCCTTGTCATTCTCCTTCTCCTCCTCCT  700

seq1  CCTGACCTGTCTTGGAGCTCTAAGGATACCTTGGAGAGACCAGGTTCCCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTGTCTTGGAGCTCTAAGGATACCTTGGAGAGACCAGGTTCCCA  750

seq1  GATGTCCAGAAAGGCCCAACACCTAAGTGCCCATCAACAAGGTTCCAATG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCAGAAAGGCCCAACACCTAAGTGCCCATCAACAAGGTTCCAATG  800

seq1  CCTAGGCTACACAACAAATCCAGGAATATCCCAGGACACTGGGGGACAGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTACACAACAAATCCAGGAATATCCCAGGACACTGGGGGACAGA  850

seq1  CCTAGAATTTGGAGAAGCCCCATGTGGAAGGCTTAGTGCCATCCTGAGAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATTTGGAGAAGCCCCATGTGGAAGGCTTAGTGCCATCCTGAGAG  900

seq1  ACAAAATCCTTTTTTAAGTTCTGACTCCATTTTAGAGAACTTGAATTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCCTTTTTTAAGTTCTGACTCCATTTTAGAGAACTTGAATTC  948