BAC Information

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BAC

Clone NameB6Ng01-198M13
Chromosome11 (Build37)
Map Location 24,904,167 - 24,905,345
singlet/doubletsinglet
Overlap genenone
Upstream geneA830031A19Rik, LOC100042256, Bcl11a, LOC100042282
Downstream gene5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198M13.bB6Ng01-198M13.g
ACCGA020294GA020295
length1,2081,163
definitionB6Ng01-198M13.b B6Ng01-198M13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaaatgcaaatgtctaagaagcacataaagaaatg
ttcaacattcttactcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacatcagtcagaatggctaagatcaaaaactcaggtgacaga
agattgtggcaaggatgtggagaaggggggaacactcttccattgctggt
gagattgcaagctggtataaccccctctggaaatcagtttggcagttcct
tagaaaattggacctagtaccacttgaggaacaagctataccactcctgg
gcatatacccagaagattctccaacatgtaatatggacacatgctccaca
atattcatatcagctttaattataaaggccagaagttggaaagaaccagg
atgttcctcaatagaggaatggatacagaaattgtgatacatttacacaa
tagaatactacacagctattaaaaacaatgacttcatgaaattctcaggc
aaatggatgaaacttaaaaatttcatcctgagtgaggtaacacagtcaca
aaagaactcacatgatatgcactcactgataagtggatattatcccaaaa
gcttggaatacccaagatacaattcacagaccacatgaagctcaagaagg
aagaccaagtgtagatgtttcagtccttcttagaaggtggaacaaaatac
ccacaggaggagatacagagacaaattgtggagcagagaccgaagaaaag
gccatccagagactgccctacatggggaatctatctcatatacagtttcc
aaaccaggaggctattgtagatgctgggaagtgcttgtcgacagaagcct
gatatcgctgtcctctgagaggctctgccagaacctgacacatacagagg
tgaatgttcacagccacccattggactgaatatggggtccttgatggagg
agttggagaagggaatgaagagctgagagggtttgcagttctatgggggg
agcacagcgtcaaccagccagagctcccaggaactggaccacagctaaga
gtacgcgtggaggaaccaatgctcagcagcatatgtgccagagtattgcc
ttgtttggacattcagtgaagaagtcgtttgggctttagggatttgaatg
catacgttaggctaatgcaggtcagtgaagctagtgacaatgtagctgtg
ttacgtgt
gaattcaactggttgtcaggcaagttctttcagctgctgaaccttaccag
ctctgtgtcaaaattttaattcagttgtttactacccataactcatctgt
tattttaacatgtgaaagcccatgttattcttgacaaagttcctgagagc
tcggtatgatctatttctttcaatacaccatgttctgtgtttcctttaaa
tagcttatcctcagggtttgtctggaaacttttgtttatttcattcagag
gtatcttcagggctcctgaccaaatcactgaaatgtcactcctgaggtaa
tttgggtgatgtaaatcctttttcagtataataagtcctgttttctaccc
acaaattcaaaacatcatgagaaatattcccggctgcatttacttgtcct
ggatggctcattgatgggatttgttgaagtatttcttatgttatttgcat
tttgactcctgtatataattacatttcgttttcctgtggctcttccaaat
ccttttctagaactaaacttagaggttttcctcccagtacctctagaatt
ccttcatcatcagaaatattcttttttatctcccccttccctccctctgg
caaggagacaaagatatagttacccatcagttcagttcttgagaaaagaa
aactaacctggaacgaaacaggatttagaatgtttgcagcagtgcccaca
ctcctgggcatctagaagaacggcgtttcagttctctagtcatttcaatg
acatcataaactgcagaaatttaaataacttcagtatactatttctgcta
ttgtgttttatcattaatcaccattaacctcttgttctccttaattataa
atcaaactagcaaatgaatatagctgtaggaaaaccatattatctataaa
gtttagcgctacctactgctttgggcacccattatgaccttctttcatgt
ccttgtgactaaattaactttcttatgtggcatgttcaaagagtagccta
taatattttttatagaaggcagactacttatcttacatatcatgagaaat
atttattttggggaatagtttcatgttttgtttgttttgtttggtttgga
agtgagccctgaccttggcttatagctcatacatctcatgtctctcagaa
actgtgttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24904167_24905345
seq2: B6Ng01-198M13.g_63_1225 (reverse)

seq1  AAACCA--ACAGTTTCTGAGA-CCATGGGAGATGGTGATGAAGCTTATTT  47
      ||||||  |||||||||||||  |||  ||||||   ||| ||| |||  
seq2  AAACCAACACAGTTTCTGAGAGACAT--GAGATG--TATG-AGC-TAT--  42

seq1  TAAAGACCAGGGTCAGGGGGCTCACTTCAAAACAAAACAAAACAAAACAA  97
        ||| ||| |||||  ||||||||||| |||| ||||||||| ||||||
seq2  --AAG-CCAAGGTCA--GGGCTCACTTCCAAACCAAACAAAAC-AAACAA  86

seq1  AACACTGAAAACTAATCCCCAAAATAAATATTTCCTCATTGATTATGTAA  147
      |||| || |||||| |||||||||||||||||| |||| ||| |||||||
seq2  AACA-TG-AAACTATTCCCCAAAATAAATATTT-CTCA-TGA-TATGTAA  131

seq1  GATAAGTAGTCTGCCTTCTAT-AAAAATATTATAGGCTACTCTTTGAACA  196
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATAAGTAGTCTGCCTTCTATAAAAAATATTATAGGCTACTCTTTGAACA  181

seq1  TGCCACATAAGAAAGTTAATTTAGTCCACAAGGACATGAAAGAAGGTCAT  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCCACATAAGAAAGTTAATTTAGT-CACAAGGACATGAAAGAAGGTCAT  230

seq1  AATGGGTGCCCAAAGCAGTAGGTAGCGCTAAACTTTATAGATAATATGGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTGCCCAAAGCAGTAGGTAGCGCTAAACTTTATAGATAATATGGT  280

seq1  TTTCCTACAGCTATATTCATTTGCTAGTTTGATTTATAATTAAGGAGAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACAGCTATATTCATTTGCTAGTTTGATTTATAATTAAGGAGAAC  330

seq1  AAGAGGTTAATGGTGATTAATGATAAAACACAATAGCAGAAATAGTATAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTAATGGTGATTAATGATAAAACACAATAGCAGAAATAGTATAC  380

seq1  TGAAGTTATTTAAATTTCTGCAGTTTATGATGTCATTGAAATGACTAGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTATTTAAATTTCTGCAGTTTATGATGTCATTGAAATGACTAGAG  430

seq1  AACTGAAACGCCGTTCTTCTAGATGCCCAGGAGTGTGGGCACTGCTGCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAACGCCGTTCTTCTAGATGCCCAGGAGTGTGGGCACTGCTGCAA  480

seq1  ACATTCTAAATCCTGTTTCGTTCCAGGTTAGTTTTCTTTTCTCAAGAACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTAAATCCTGTTTCGTTCCAGGTTAGTTTTCTTTTCTCAAGAACT  530

seq1  GAACTGATGGGTAACTATATCTTTGTCTCCTTGCCAGAGGGAGGGAAGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATGGGTAACTATATCTTTGTCTCCTTGCCAGAGGGAGGGAAGGG  580

seq1  GGAGATAAAAAAGAATATTTCTGATGATGAAGGAATTCTAGAGGTACTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATAAAAAAGAATATTTCTGATGATGAAGGAATTCTAGAGGTACTGG  630

seq1  GAGGAAAACCTCTAAGTTTAGTTCTAGAAAAGGATTTGGAAGAGCCACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAACCTCTAAGTTTAGTTCTAGAAAAGGATTTGGAAGAGCCACAG  680

seq1  GAAAACGAAATGTAATTATATACAGGAGTCAAAATGCAAATAACATAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGAAATGTAATTATATACAGGAGTCAAAATGCAAATAACATAAGA  730

seq1  AATACTTCAACAAATCCCATCAATGAGCCATCCAGGACAAGTAAATGCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCAACAAATCCCATCAATGAGCCATCCAGGACAAGTAAATGCAG  780

seq1  CCGGGAATATTTCTCATGATGTTTTGAATTTGTGGGTAGAAAACAGGACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAATATTTCTCATGATGTTTTGAATTTGTGGGTAGAAAACAGGACT  830

seq1  TATTATACTGAAAAAGGATTTACATCACCCAAATTACCTCAGGAGTGACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATACTGAAAAAGGATTTACATCACCCAAATTACCTCAGGAGTGACA  880

seq1  TTTCAGTGATTTGGTCAGGAGCCCTGAAGATACCTCTGAATGAAATAAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGATTTGGTCAGGAGCCCTGAAGATACCTCTGAATGAAATAAAC  930

seq1  AAAAGTTTCCAGACAAACCCTGAGGATAAGCTATTTAAAGGAAACACAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTCCAGACAAACCCTGAGGATAAGCTATTTAAAGGAAACACAGA  980

seq1  ACATGGTGTATTGAAAGAAATAGATCATACCGAGCTCTCAGGAACTTTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGTATTGAAAGAAATAGATCATACCGAGCTCTCAGGAACTTTGT  1030

seq1  CAAGAATAACATGGGCTTTCACATGTTAAAATAACAGATGAGTTATGGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATAACATGGGCTTTCACATGTTAAAATAACAGATGAGTTATGGGT  1080

seq1  AGTAAACAACTGAATTAAAATTTTGACACAGAGCTGGTAAGGTTCAGCAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACAACTGAATTAAAATTTTGACACAGAGCTGGTAAGGTTCAGCAG  1130

seq1  CTGAAAGAACTTGCCTGACAACCAGTTGAATTC  1179
      |||||||||||||||||||||||||||||||||
seq2  CTGAAAGAACTTGCCTGACAACCAGTTGAATTC  1163