BAC Information

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BAC

Clone NameB6Ng01-198O09
Chromosome11 (Build37)
Map Location 72,367,259 - 72,497,204
singlet/doubletdoublet
Overlap geneLOC432577, Ube2g1
Upstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik
Downstream geneAnkfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198O09.bB6Ng01-198O09.g
ACCGA020375GA020376
length1,1011,095
definitionB6Ng01-198O09.b B6Ng01-198O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,367,259 - 72,368,357)(72,496,104 - 72,497,204)
sequence
gaattcaattcccagcaaccacatggtagctcacaaccatttgtaatgtg
atctggtgccctcttctggtgtgtctgaagacagcaacattgtactcata
tacattaaataaactatttttttttaaaaaaggaagattttatgttatac
aaatttcacaaccattcttggagttgttttggtttggttttgttttggac
gcagagacttaatatgtagcccaggctggtcttgaattcacaattggcct
tagccttctacatactgagattacaggcgtgaacaatacctgttcaagca
gaccgggtatggtggcacaggcacaggtgactccagctcctccaggggca
gaagtgtttctggagctcaggagtctggggccacagtgaactctgctaat
caggtgtccacatcgaaatggtgacctctaggaagcagggacaatcagcc
tgcttgtgctgagctgaacagggatgcccgtgagcagacaccacagtcta
gtctgggaacacatgagacttctctttcctttcctgattagaatagttca
ttgaataaacattctttatattttttatcagtcctttgagaattgtatgc
aatatttttgcttttgcttttgagacacagtctcactgtgtagctctggt
tgccctgtaacttgctacaatgtagaccaggctagccttgaattcacggc
aatccacctacctctgcctctcagtgctgggattaaaactgtgacagtca
cactcagctgcctgctccctgctttacgtgctgatttgtgctaataaaat
tctagctgggcagaggtggtgtgtgcctttgatcccagcactcgggaggc
agaggcaggaagatttgaggctagcctggtctacatatgttagcttgcag
gaggagccaaggctaaacaaaaatccttgtttcaaataaccaaaataaaa
taaagtaaacataaataaattaattgttcaccattacctcattttgggag
tcaatcaaattatacgttagttgggtaacatttacttctctgtaggacta
tctatttttctactttgtccttcatggaaggcatgaagctactaatgcct
a
gaattcaaaatgcgtaatcatctttagttggcacttgttaggctcttgtc
agcattaatgactggcatgttttattgcagcccagttccagccagagctt
gccaacttattacaacagaagtccagcaataggtgggtagagtgcaggaa
aaacagtgccatgtttctcaattggagacctacaacaaaacaaacaacat
tatgtaataaagttataaacaacaaatacatttctgaataaaactattat
ttatattaataataaaaaaaaattttaagaaacacatgtttaaaaacaac
aacaacaacaaaaaccctactatcttatgaaatgcttactgtgtgctaag
tagtgttaagtgttttacaaattgtacaaattgagataaatgaaaacatc
acatgaagtccccactgcagagaattaggatatgattacacagctaacaa
tgatttcctagtaaacaaacaaaaacaaaaaacaaaaccccaaaacataa
ggttcaaggatttttaaaatcccatttatgagtggaccctctggtagtca
ggcttaggagcaagttccttatccaatcatggttatcagcttcttcacct
tatttttttcatacagtgtctctgactgaacctggagttcattgatttca
ctaggcaggctggccaataacctccaggatgatctgcttttggtcatctc
ctcagtaccagaataaaaggtgagtgagtgctgccacgttttggatgcta
ggtgttcatgtttgaacacagcaagcactctattaattcagctatctcat
ctccccagttctcattcttatttcttaatctacaatctggagatgttata
ttctaaaatcataagtatcctgcttactttattactaaaactaaaatgtt
cattttctatgggtttatacaacattttgaaaggaacaacaacaaaaaag
cagatcaattcttcatagaaaaagaaatagaaaaagctttgtctaaacac
aataataataggtagcttctcactcacagggatgtccagtaagttctatc
aatcaataaaacaactgaagattagctacctatcaatttctccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72367259_72368357
seq2: B6Ng01-198O09.b_45_1145

seq1  GAATTCAATTCCCAGCAACCACATGGTAGCTCACAACCATTTGTAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAACCACATGGTAGCTCACAACCATTTGTAATGTG  50

seq1  ATCTGGTGCCCTCTTCTGGTGTGTCTGAAGACAGCAACATTGTACTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTGCCCTCTTCTGGTGTGTCTGAAGACAGCAACATTGTACTCATA  100

seq1  TACATTAAATAAACTATTTTTTTTTAAAAAAGGAAGATTTTATGTTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAATAAACTATTTTTTTTTAAAAAAGGAAGATTTTATGTTATAC  150

seq1  AAATTTCACAACCATTCTTGGAGTTGTTTTGGTTTGGTTTTGTTTTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCACAACCATTCTTGGAGTTGTTTTGGTTTGGTTTTGTTTTGGAC  200

seq1  GCAGAGACTTAATATGTAGCCCAGGCTGGTCTTGAATTCACAATTGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACTTAATATGTAGCCCAGGCTGGTCTTGAATTCACAATTGGCCT  250

seq1  TAGCCTTCTACATACTGAGATTACAGGCGTGAACAATACCTGTTCAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCTACATACTGAGATTACAGGCGTGAACAATACCTGTTCAAGCA  300

seq1  GACCGGGTATGGTGGCACAGGCACAGGTGACTCCAGCTCCTCCAGGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGGTATGGTGGCACAGGCACAGGTGACTCCAGCTCCTCCAGGGGCA  350

seq1  GAAGTGTTTCTGGAGCTCAGGAGTCTGGGGCCACAGTGAACTCTGCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTTCTGGAGCTCAGGAGTCTGGGGCCACAGTGAACTCTGCTAAT  400

seq1  CAGGTGTCCACATCGAAATGGTGACCTCTAGGAAGCAGGGACAATCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTCCACATCGAAATGGTGACCTCTAGGAAGCAGGGACAATCAGCC  450

seq1  TGCTTGTGCTGAGCTGAACAGGGATGCCCGTGAGCAGACACCACAGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGCTGAGCTGAACAGGGATGCCCGTGAGCAGACACCACAGTCTA  500

seq1  GTCTGGGAACACATGAGACTTCTCTTTCCTTTCCTGATTAGAATAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGAACACATGAGACTTCTCTTTCCTTTCCTGATTAGAATAGTTCA  550

seq1  TTGAATAAACATTCTTTATATTTTTTATCAGTCCTTTGAGAATTGTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAACATTCTTTATATTTTTTATCAGTCCTTTGAGAATTGTATGC  600

seq1  AATATTTTTGCTTTTGCTTTTGAGACACAGTCTCACTGTGTAGCTCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTGCTTTTGCTTTTGAGACACAGTCTCACTGTGTAGCTCTGGT  650

seq1  TGCCCTGTAACTTGCTACAATGTAGACCAGGCTAGCCTTGAATTCACGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGTAACTTGCTACAATGTAGACCAGGCTAGCCTTGAATTCACGGC  700

seq1  AATCCACCTACCTCTGCCTCTCAGTGCTGGGATTAAAACTGTGACAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACCTACCTCTGCCTCTCAGTGCTGGGATTAAAACTGTGACAGTCA  750

seq1  CACTCAGCTGCCTGCTCCCTGCTTTACGTGCTGATTTGTGCTAATAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGCTGCCTGCTCCCTGCTTTACGTGCTGATTTGTGCTAATAAAAT  800

seq1  TCTAGCTGGGCAGAGGTGGTGTGTGCCTTTGATCCCAGCACTCGGGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGGGCAGAGGTGGTGTGTGCCTTTGATCCCAGCACTCGGGAGGC  850

seq1  AGAGGCAGGAAGATTTGAGGCTAGCCTGGTCTACA-AAGTTAG-TTCCAG  898
      ||||||||||||||||||||||||||||||||||| | ||||| || |||
seq2  AGAGGCAGGAAGATTTGAGGCTAGCCTGGTCTACATATGTTAGCTTGCAG  900

seq1  GA-CAGCCAAGGCTAAACAAAAAT-CTTGTTTCAAATAACCAAAAATAAA  946
      ||  |||||||||||||||||||| |||||||||||||||| ||||||||
seq2  GAGGAGCCAAGGCTAAACAAAAATCCTTGTTTCAAATAACC-AAAATAAA  949

seq1  ATAAAGTAAACATAAATAAA-TAAATGTTCACCATTACCTCAATTTTGGG  995
      |||||||||||||||||||| ||| |||||||||||||||| ||||||||
seq2  ATAAAGTAAACATAAATAAATTAATTGTTCACCATTACCTC-ATTTTGGG  998

seq1  AGTCCAATCAGAATATACGTTAGTTGGG-AACATTTACTTCTCTGTAGGA  1044
      ||| |||||| | ||||||||||||||| |||||||||||||||||||||
seq2  AGT-CAATCAAATTATACGTTAGTTGGGTAACATTTACTTCTCTGTAGGA  1047

seq1  CTATCTATTTTTTCTTCTTTGGTCCTTCATGG-AGGCATGAAGCTATAAA  1093
      ||||||| ||||||| |||| ||||||||||| |||||||||||||  ||
seq2  CTATCTA-TTTTTCTACTTT-GTCCTTCATGGAAGGCATGAAGCTACTAA  1095

seq1  TGCCTA  1099
      ||||||
seq2  TGCCTA  1101

seq1: chr11_72496104_72497204
seq2: B6Ng01-198O09.g_68_1162 (reverse)

seq1  AGGGAGAAATGGATA-GTAGCTATTCCTCAGTTTGTTTTATTTGAATGAT  49
      |||||||||| |||| ||||||| || |||| |||||||| |||| ||||
seq2  AGGGAGAAATTGATAGGTAGCTAATCTTCAG-TTGTTTTA-TTGATTGAT  48

seq1  AGAACTTACTGGAACAATTCCTGTGAGTGAGAAGCTACCTA-TATTATTG  98
      |||||||||||||   || |||||||||||||||||||||| ||||||||
seq2  AGAACTTACTGGA--CATCCCTGTGAGTGAGAAGCTACCTATTATTATTG  96

seq1  TGTTTAAGAACAAAGCTTTTTCTATTTCTTTTTCTATTGAAGAAATTGAT  148
      ||||||   ||||||||||||||||||||||||||| ||||| |||||||
seq2  TGTTTA--GACAAAGCTTTTTCTATTTCTTTTTCTA-TGAAG-AATTGAT  142

seq1  CTGCTTTTTTGTTGTTGTTCCTTTCAAAATGTTGTATAAACCCATAGAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTTGTTGTTGTTCCTTTCAAAATGTTGTATAAACCCATAGAAA  192

seq1  ATGAACATTTTAGTTTTAGTAATAAAGTAAGCAGGATACTTATGATTTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATTTTAGTTTTAGTAATAAAGTAAGCAGGATACTTATGATTTTA  242

seq1  GAATATAACATCTCCAGATTGTAGATTAAGAAATAAGAATGAGAACTGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAACATCTCCAGATTGTAGATTAAGAAATAAGAATGAGAACTGGG  292

seq1  GAGATGAGATAGCTGAATTAATAGAGTGCTTGCTGTGTTCAAACATGAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGATAGCTGAATTAATAGAGTGCTTGCTGTGTTCAAACATGAAC  342

seq1  ACCTAGCATCCAAAACGTGGCAGCACTCACTCACCTTTTATTCTGGTACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCATCCAAAACGTGGCAGCACTCACTCACCTTTTATTCTGGTACT  392

seq1  GAGGAGATGACCAAAAGCAGATCATCCTGGAGGTTATTGGCCAGCCTGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGACCAAAAGCAGATCATCCTGGAGGTTATTGGCCAGCCTGCC  442

seq1  TAGTGAAATCAATGAACTCCAGGTTCAGTCAGAGACACTGTATGAAAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAATCAATGAACTCCAGGTTCAGTCAGAGACACTGTATGAAAAAA  492

seq1  ATAAGGTGAAGAAGCTGATAACCATGATTGGATAAGGAACTTGCTCCTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTGAAGAAGCTGATAACCATGATTGGATAAGGAACTTGCTCCTAA  542

seq1  GCCTGACTACCAGAGGGTCCACTCATAAATGGGATTTTAAAAATCCTTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACTACCAGAGGGTCCACTCATAAATGGGATTTTAAAAATCCTTGA  592

seq1  ACCTTATGTTTTGGGGTTTTGTTTTTTGTTTTTGTTTGTTTACTAGGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATGTTTTGGGGTTTTGTTTTTTGTTTTTGTTTGTTTACTAGGAAA  642

seq1  TCATTGTTAGCTGTGTAATCATATCCTAATTCTCTGCAGTGGGGACTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTAGCTGTGTAATCATATCCTAATTCTCTGCAGTGGGGACTTCA  692

seq1  TGTGATGTTTTCATTTATCTCAATTTGTACAATTTGTAAAACACTTAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTTTTCATTTATCTCAATTTGTACAATTTGTAAAACACTTAACA  742

seq1  CTACTTAGCACACAGTAAGCATTTCATAAGATAGTAGGGTTTTTGTTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGCACACAGTAAGCATTTCATAAGATAGTAGGGTTTTTGTTGTT  792

seq1  GTTGTTGTTTTTAAACATGTGTTTCTTAAAATTTTTTTTTATTATTAATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTTTAAACATGTGTTTCTTAAAATTTTTTTTTATTATTAATA  842

seq1  TAAATAATAGTTTTATTCAGAAATGTATTTGTTGTTTATAACTTTATTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATAGTTTTATTCAGAAATGTATTTGTTGTTTATAACTTTATTAC  892

seq1  ATAATGTTGTTTGTTTTGTTGTAGGTCTCCAATTGAGAAACATGGCACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTGTTTGTTTTGTTGTAGGTCTCCAATTGAGAAACATGGCACTG  942

seq1  TTTTTCCTGCACTCTACCCACCTATTGCTGGACTTCTGTTGTAATAAGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTGCACTCTACCCACCTATTGCTGGACTTCTGTTGTAATAAGTT  992

seq1  GGCAAGCTCTGGCTGGAACTGGGCTGCAATAAAACATGCCAGTCATTAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTCTGGCTGGAACTGGGCTGCAATAAAACATGCCAGTCATTAAT  1042

seq1  GCTGACAAGAGCCTAACAAGTGCCAACTAAAGATGATTACGCATTTTGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAAGAGCCTAACAAGTGCCAACTAAAGATGATTACGCATTTTGAA  1092

seq1  TTC  1101
      |||
seq2  TTC  1095