BAC Information

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BAC

Clone NameB6Ng01-198P18
Chromosome19 (Build37)11 (Build37)
Map Location 61,259,751 - 61,260,848121,794,808 - 121,795,960
singlet/doubletsingletsinglet
Overlap geneEG547091
Upstream geneD19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322, BC029127, LOC100043112, LOC433261, EG633057
Downstream geneCsf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198P18.bB6Ng01-198P18.g
ACCGA020435GA020436
length1,1551,161
definitionB6Ng01-198P18.b B6Ng01-198P18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,259,751 - 61,260,848)(121,794,808 - 121,795,960)
sequence
gaattcatactggagagaaaccttacaaatgtaatgaatgtggtaaagtc
tttggatgacagagtcatctcagacttcataaaagaatacatactggaga
gaaaccttacaaatgtgatcaatgtggtaaagcctttccatacagtagta
ctctccaagtacataaaagaacacatactggagagaagccctatgagtgt
gatcaatgtggcaaagcctttgcaaatcaaagttatttacatgtacataa
aagaatacatagtggagagaaaccctatgaatgtaagcaatgtagtaaat
cctttgtttctaatggtcaacttcaaagtcatcaaagaattcatactgga
gagaaaccttacaaatgtaatgaatgtggtaaagcctttgcacactgtcg
taatcttcaaaagcataaaagaatacatattggagagaaaccttacaaat
gtagaaaatatggcaaagtctattcacaatcaagtcacctccagctacac
ggaagaacacatactaaggagtaatcctatgaatataaccaatgtggtaa
agcctttacagtgatcttgaaaggtgtggtggtttaaaaatacttggccc
atgggaagtggtagtattcagaagtatggcctttcaggaatagatgtggc
atttgagaaagtatgtcacagtgggggtggactttgagatcctatgctta
agctccacccagggcagaagagtcttctggctgccttctgataaagaagt
agaactctcgtctcctccagcaccatgtctgcttggacactgccattttt
ttcagccttgatattagactgaaccctctgaatctgtacactacccccca
attaaatgtcctttataagagttgccttggaccaaaattaagacaaactg
cataaaagataacccactagagagaaactgacaagcagatagttctctgc
atgtttgataacagaaatacttgttttagatagtcactttccttctcctt
ttcctctcttttccaatttttcctcatctatatcttcctacatcttcctt
ttcctttcaatttctcaacgccaacgccaatgagatagtgatatatttag
atagatctcaattgtagccaggtagtcttgaatggaaatcctcaaactct
atctc
gaattctaatattaaggtggctttttcattactaatgaatttttggaagg
tagagtgacctttttcttgtattggaaataaagcacacagcatggtattg
gccctggaacttcttgagcctttaaaactcaaactttaccatgtaaatta
actgtggatctgtgaagaagtatataattttggacagagctgaattaagt
atattttgggatttgatatgtttattgattatcaagacaatggaagcaca
ggccttgtttcgatattcttaactgtcacttctgtgacatagtccacact
ctacatagtctgtggaactcagtgactatcaacatgcaactgcctctccc
tgacttggactttgtaatacaatgtcatgagtatccataggatctcagag
tgtacaattactggatgtctcactgtgaatcatctgacacaatccactga
caccatttctcattatgttcacataatcagcttgttgaaatgttccaagg
accaaatttgtaaaaaaggggcttccttccagatgttcacaaacaagagt
gatatcatagagcctgagaatgaattatcctaagtatttacctacccgtg
tttattacatgagctgtggacaccagttgcagagtcccagggaagagagt
gtttaagtttcctcaaggtctcagaaacaatctgaaaaaaaaaatcatga
atatgaaacaaacctctcctttgcccagagaaataagagctggtagaaat
ttgatgtgctgatgtgcatggcacttcacaatccacactgcccaggttta
aggcaggatgaatactttcaatttgatggtagtcttcttcctcctcaaca
ttccacttgcccatggccaatttccttgatcccatgtgattttggagaat
aaatttgcctgaagtcaatgatagaagacttggagggaacttgttccttc
atcccttggaggcaatttcagatgaatatggagaaggattaacttcaacc
agattctgatgtcctgtaagtgcaatttgtatttccatgttaaatggaca
accttgaatgttttctttgagtggatctggcataaagaattaaggccaaa
tacttgatccttctttcctgttacctatctgaccttcagaacaacatact
ctcgtttacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_61259751_61260848
seq2: B6Ng01-198P18.b_104_1202

seq1  TGACAGAGTCATCTCAGACTTCATAAAAGAATACATACTGGAGAGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGTCATCTCAGACTTCATAAAAGAATACATACTGGAGAGAAACC  50

seq1  TTACAAATGTGATCAATGTGGTAAAGCCTTTCCATACAGTAGTACTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGTGATCAATGTGGTAAAGCCTTTCCATACAGTAGTACTCTCC  100

seq1  AAGTACATAAAAGAACACATACTGGAGAGAAGCCCTATGAGTGTGATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATAAAAGAACACATACTGGAGAGAAGCCCTATGAGTGTGATCAA  150

seq1  TGTGGCAAAGCCTTTGCAAATCAAAGTTATTTACATGTACATAAAAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAAAGCCTTTGCAAATCAAAGTTATTTACATGTACATAAAAGAAT  200

seq1  ACATAGTGGAGAGAAACCCTATGAATGTAAGCAATGTAGTAAATCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGGAGAGAAACCCTATGAATGTAAGCAATGTAGTAAATCCTTTG  250

seq1  TTTCTAATGGTCAACTTCAAAGTCATCAAAGAATTCATACTGGAGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATGGTCAACTTCAAAGTCATCAAAGAATTCATACTGGAGAGAAA  300

seq1  CCTTACAAATGTAATGAATGTGGTAAAGCCTTTGCACACTGTCGTAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAAATGTAATGAATGTGGTAAAGCCTTTGCACACTGTCGTAATCT  350

seq1  TCAAAAGCATAAAAGAATACATATTGGAGAGAAACCTTACAAATGTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCATAAAAGAATACATATTGGAGAGAAACCTTACAAATGTAGAA  400

seq1  AATATGGCAAAGTCTATTCACAATCAAGTCACCTCCAGCTACACGGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCAAAGTCTATTCACAATCAAGTCACCTCCAGCTACACGGAAGA  450

seq1  ACACATACTAAGGAGTAATCCTATGAATATAACCAATGTGGTAAAGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACTAAGGAGTAATCCTATGAATATAACCAATGTGGTAAAGCCTT  500

seq1  TACAGTGATCTTGAAAGGTGTGGTGGTTTAAAAATACTTGGCCCATGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGATCTTGAAAGGTGTGGTGGTTTAAAAATACTTGGCCCATGGGA  550

seq1  AGTGGTAGTATTCAGAAGTATGGCCTTTCAGGAATAGATGTGGCATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAGTATTCAGAAGTATGGCCTTTCAGGAATAGATGTGGCATTTGA  600

seq1  GAAAGTATGTCACAGTGGGGGTGGACTTTGAGATCCTATGCTTAAGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATGTCACAGTGGGGGTGGACTTTGAGATCCTATGCTTAAGCTCC  650

seq1  ACCCAGGGCAGAAGAGTCTTCTGGCTGCCTTCTGATAAAGAAGTAGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGCAGAAGAGTCTTCTGGCTGCCTTCTGATAAAGAAGTAGAACT  700

seq1  CTCGTCTCCTCCAGCACCATGTCTGCTTGGACACTGCCA-TTTTTTCAGC  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCGTCTCCTCCAGCACCATGTCTGCTTGGACACTGCCATTTTTTTCAGC  750

seq1  CTTGATATTAGACTGAA-CCTCTGAATCTGTACACTA-CCCCCAATTAAA  797
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  CTTGATATTAGACTGAACCCTCTGAATCTGTACACTACCCCCCAATTAAA  800

seq1  TGTCCTTTATAAGAGTTGCCTTGGACCAAAATTAAGACAAACTGCATAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTATAAGAGTTGCCTTGGACCAAAATTAAGACAAACTGCATAAA  850

seq1  AGATAACCCACTAGAGAGAAACTGACAAGCAGATAGTTCTCTGCATGTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACCCACTAGAGAGAAACTGACAAGCAGATAGTTCTCTGCATGTTT  900

seq1  GATAACAGAAATAACTTGTTTTAGATAGTCAC-TTCCTTCTCCTTTT-CT  945
      |||||||||||| ||||||||||||||||||| |||||||||||||| ||
seq2  GATAACAGAAAT-ACTTGTTTTAGATAGTCACTTTCCTTCTCCTTTTCCT  949

seq1  CTCTTT--CCATTTTTCCTCATCTATATCTTCCTACATC-TCCTTTTCCT  992
      ||||||  | ||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTTTTCCAATTTTTCCTCATCTATATCTTCCTACATCTTCCTTTTCCT  999

seq1  TTTCATTTCTCACCCCCCACCCCCATGAGGATAGTGATATATTAAGATAG  1042
      ||  |||||||| | || || || |||| |||||||||||||| ||||||
seq2  TTCAATTTCTCAACGCCAACGCCAATGA-GATAGTGATATATTTAGATAG  1048

seq1  AATCTCAAATGTAGCCCAGGGTAGTCTTGAATTGAAAATCCTCCAACCTC  1092
       ||||||| |||||||   |||||||||||| || ||||||| ||| |||
seq2  -ATCTCAATTGTAGCC--AGGTAGTCTTGAA-TGGAAATCCT-CAAACTC  1093

seq1  TATCTC  1098
      ||||||
seq2  TATCTC  1099

seq1: chr11_121794808_121795960
seq2: B6Ng01-198P18.g_67_1227 (reverse)

seq1  CTGTAAAGGAGTTAATGTTGTTTCTGGTGTTCAGATTTAGTAACAGGAAA  50
      ||||||| |||   |||||| |||||  | ||||| |  |||||||||||
seq2  CTGTAAACGAGAGTATGTTG-TTCTGAAGGTCAGA-TAGGTAACAGGAAA  48

seq1  GAAGATTCAAGTATTT-GCCT--AATCTTTATCCCCAGA-CCACTCAA--  94
      ||||  |||||||||| ||||  | |||||||  ||||| ||||||||  
seq2  GAAGGATCAAGTATTTGGCCTTAATTCTTTAT-GCCAGATCCACTCAAAG  97

seq1  GAAACATTCAA-GTTGT-CATTT-GCATGGAAAATACAAA-TGCACTTAC  140
       |||||||||| ||||| |||||  ||||| ||||||||| |||||||||
seq2  AAAACATTCAAGGTTGTCCATTTAACATGG-AAATACAAATTGCACTTAC  146

seq1  AGGACACTCAGAATCTGGTCGAAG-TGACCCTTCTCCATATTCATC-GGA  188
      |||||| |||||||||||| |||| | | ||||||||||||||||| | |
seq2  AGGACA-TCAGAATCTGGTTGAAGTTAATCCTTCTCCATATTCATCTGAA  195

seq1  ATTG-CTCCAA-GGATGAAGGAACAAGTT-CCTCCAAGTC-TCTGTCATT  234
      |||| |||||| ||||||||||||||||| |||||||||| ||| |||||
seq2  ATTGCCTCCAAGGGATGAAGGAACAAGTTCCCTCCAAGTCTTCTATCATT  245

seq1  GACTTCAGGCAAATTTATTCTCCAAAATCACATGGGATCAAGGAAATTGG  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGGCAAATTTATTCTCCAAAATCACATGGGATCAAGGAAATTGG  295

seq1  CCAT-GGCAAGTGGAATGTTGAGGAG---GAAGACTACCATCAAATTGAA  330
      |||| |||||||||||||||||||||   |||||||||||||||||||||
seq2  CCATGGGCAAGTGGAATGTTGAGGAGGAAGAAGACTACCATCAAATTGAA  345

seq1  CGTATTCATCCTGCCTTAAACCTGGGCAGTGTGGATTGTGAAGTGCCATG  380
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCATCCTGCCTTAAACCTGGGCAGTGTGGATTGTGAAGTGCCATG  395

seq1  CACATCAGCAACTCAAATTTCTACCAGCTTTTATTTCTCTGGGCAAAGGA  430
      ||||||||||  ||||||||||||||||| ||||||||||||||||||||
seq2  CACATCAGCACATCAAATTTCTACCAGCTCTTATTTCTCTGGGCAAAGGA  445

seq1  GAGGTTTGTTTCATGTTCATGATTTTTTATTTTCAGATTGTTTCTGAGAC  480
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  GAGGTTTGTTTCATATTCATGATTTTTT-TTTTCAGATTGTTTCTGAGAC  494

seq1  CTTGAGGAAACTTAAACACTCTCTTCCCTGGGACTCTGCAACTGGTGTCC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGAAACTTAAACACTCTCTTCCCTGGGACTCTGCAACTGGTGTCC  544

seq1  ACAGCTCATGTAATAAACACGGGTAGGTAAATACTTAGGATAATTCATTC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCATGTAATAAACACGGGTAGGTAAATACTTAGGATAATTCATTC  594

seq1  TCAGGCTCTATGATATCACTCTTGCTTGTGAACGTCTGGAAGGAGGCCCC  630
      |||||||||||||||||||||||| |||||||| |||||||||| |||||
seq2  TCAGGCTCTATGATATCACTCTTGTTTGTGAACATCTGGAAGGAAGCCCC  644

seq1  CCTTTTTTTTTTTACAAATTTGGTCCTTGGAACATTTCAACAAGCTGATT  680
             |||||||||||||||||||||||||||||||||||||||||||
seq2  -------TTTTTTACAAATTTGGTCCTTGGAACATTTCAACAAGCTGATT  687

seq1  ATGTGAACATAATGAGAAATGGTGTCAGTGGATTGTGTCAGATGATTCAC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACATAATGAGAAATGGTGTCAGTGGATTGTGTCAGATGATTCAC  737

seq1  AGTGAGACATCCAGTAATTGTACATTCTGAGATCCTGTGGATACTCATGA  780
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AGTGAGACATCCAGTAATTGTACACTCTGAGATCCTATGGATACTCATGA  787

seq1  CATTGTATTACAAAGTCCAAGTCAGGGAGAGGCAGTTTCATGTTGATGGT  830
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  CATTGTATTACAAAGTCCAAGTCAGGGAGAGGCAGTTGCATGTTGATAGT  837

seq1  CACCGAGTTCCACAGACCATGTAGAGTGTGGACTATGTCACAGAAGTGAC  880
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACTGAGTTCCACAGACTATGTAGAGTGTGGACTATGTCACAGAAGTGAC  887

seq1  AGTTAAGAATATCTAAACAAGGCCTGTGCTTCCATTGTCTTGATAATCAA  930
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGAATATCGAAACAAGGCCTGTGCTTCCATTGTCTTGATAATCAA  937

seq1  TAAACATATCAAATCCCAAAAT-TACTTAATTCGGCTCTGTCCAAAATTA  979
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  TAAACATATCAAATCCCAAAATATACTTAATTCAGCTCTGTCCAAAATTA  987

seq1  TATACTTCTTCACAGATCCACAGTTAATTTACATGGTAAAGTTTGAGTTT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCTTCACAGATCCACAGTTAATTTACATGGTAAAGTTTGAGTTT  1037

seq1  TAAAGGCTCAAGAAGTTCCAGGGCCAATGCCATGCTGTGTGCTTTATTTC  1079
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAAGGCTCAAGAAGTTCCAGGGCCAATACCATGCTGTGTGCTTTATTTC  1087

seq1  CAATACAAGAAAAAGGTCACTCTACCTTCCAAAAATTCATTAGTAATGAA  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAGAAAAAGGTCACTCTACCTTCCAAAAATTCATTAGTAATGAA  1137

seq1  AAAGCCACCTTAATATTAGAATTC  1153
      ||||||||||||||||||||||||
seq2  AAAGCCACCTTAATATTAGAATTC  1161