BAC Information

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BAC

Clone NameB6Ng01-200H09
Chromosome11 (Build37)
Map Location 4,179,513 - 4,307,266
singlet/doubletdoublet
Overlap geneHormad2
Upstream genePatz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif
Downstream geneMtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200H09.bB6Ng01-200H09.g
ACCGA021514GA021515
length1,0631,058
definitionB6Ng01-200H09.b B6Ng01-200H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,306,215 - 4,307,266)(4,179,513 - 4,180,568)
sequence
gaattcaaagtcagcctagtgagttccatgaaagccaaggatacacagaa
aaaaccctatcttaaaaaaaaacaaagaaaaagaactaaaggaagaagaa
agattttaaagggactggagaaatggctcagtggttaagagctgataccc
tcttgcagaggactcaagtttcattcccagaacctatgtctgatagttca
caactaccaataacttcatcttctagggggatctgtcacctctagactcc
atgggtacccatactcatatgtgcatacccacatatgcacatacccttca
cacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtataaa
tgtaaatactttctatcaagactatacaaagttaaaaaggcaggcatgct
tgtacatgtctccaaccttaggagcaaatgtggggataacagaagtttat
gagcagcctctgttagataatacgtttgaggtcaacttgggctatctgag
accagaaaaccaaaaagaaaaaaaaagcagattgtccttctcttttgcca
aatacatgtaagcagagcagcctgccagggaaagaggagtggcagggtct
ggacttgctgagaggattcattgacgcaagtaccactgacatcctcacta
aaccatcctcgtgtttcctcctagaaagtcctcacgtccacattctgaca
cacagatacaaggaactttcatctttattactttaaaacatttttgagaa
gagttctctttatagctctgacagtccttccttgtagttttgccatcttg
tagagtattagtttgagtaaatatatagatagactctgtcatttctgtct
tttgctggactgtcaagaatgtgatctcattattgtgtatttttcctttc
cactgctgtattctactcagtttttgttgtcagggggtttgttttttttg
ttgttgagaacagttttactatgtagctcttgaactggcccggaaacttg
gtcttttgaacaaggctgggcttagaacctcatgggtaatctgcctgctt
tggccttcctcct
gaattcctcaggctgtcatgggtgcagctagggagcccctcactgctggc
aaaaagccttgttacattcagcacttggaggggaacctcgggggttaggt
tcaatccagatgacaggagcagaggagccttaaggcacaggccccgtggc
ttctactaagttccttgaattctagggtccacagcctcctcctaagtccc
agggcaagcagctgcgacaaggctccatccagccaggtagcacctgcatg
tcagtgccccacctgctacaagcatcatgaattttgggaatccccacacc
cacactgtcatagaaactgtcagaaggctaagcccagctctcctataggg
tagaagaggagcttaggtgtctcccagtctaatgaagaaagctctctgca
gactccgtgccctggtgcagggaggtccagcttcctggaagcatagaagg
ccaggccgagggagacagaggctgttggagggggctgggcatgaggtcag
gcccacgtcagcccttctctctttctcttaacgtggctgggaagaggctg
ctgagccggtgccagccacagaggaggtctgtcccttgctttggggccag
accacaggcagctatgctgggcctcagccaggcccagaggaggggcattc
tcagcccccagctcctctctgtctgggccttgggacccctccccatccca
gatctcagcagcggtccagggctcttccaagcaggtgaggtcattgtctc
caccagaccagcctgacgtaaagaagtcagccacccacatggcagggtgc
atacacccgggtgcccctctccctgtggcagccccgggcccctgactctc
ttccaagggacctgcaggatccactccaacaccttgctggagtagaggtg
ggtgggcttgagaagaagaagaagagatggtctggtagggccttcagagc
ccggctgtgtcctgcaaaacagcccgaagtggaacctggagctaatttga
gcagaacaggttctggaaccttcctcttcagcaggcgtaacatacgtgca
cacgggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4306215_4307266
seq2: B6Ng01-200H09.b_47_1109 (reverse)

seq1  ---AGG-AGGGCAAAGCAGGCAGATT-TCCATGA-GTTCT-AGCCCAGCC  43
         ||| ||| |||||||||||||||  |||||| ||||| |||||||||
seq2  AGGAGGAAGGCCAAAGCAGGCAGATTACCCATGAGGTTCTAAGCCCAGCC  50

seq1  TTG-TCTATAGAACAAG-TTCCAGGCCAGT--CAGAGCTACATAGTGAAA  89
      ||| || | ||| |||| |||| |||||||   ||||||||||||| |||
seq2  TTGTTCAAAAGACCAAGTTTCCGGGCCAGTTCAAGAGCTACATAGTAAAA  100

seq1  CTG-TCTCAACAACAAAACAAAACAAACCCCTGAACAAACAAAACTGAGT  138
      ||| |||||||||||||| ||||||||||||   ||||  ||||||||||
seq2  CTGTTCTCAACAACAAAA-AAAACAAACCCCCTGACAACAAAAACTGAGT  149

seq1  AGAATACAGCAGTGGAAAGGAAAAATACACAATAATGAGATCACATTCTT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAGCAGTGGAAAGGAAAAATACACAATAATGAGATCACATTCTT  199

seq1  GACAGTCCAGCAAAAGACAGAAATGACAGAGTCTATCTATATATTTACTC  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCCAGCAAAAGACAGAAATGACAGAGTCTATCTATATATTTACTC  249

seq1  AAACTAATACTCTACAAGATGGCAAAACTACAAGGAAGGACTGTCAGAGC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATACTCTACAAGATGGCAAAACTACAAGGAAGGACTGTCAGAGC  299

seq1  TATAAAGAGAACTCTTCTCAAAAATGTTTTAAAGTAATAAAGATGAAAGT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAGAACTCTTCTCAAAAATGTTTTAAAGTAATAAAGATGAAAGT  349

seq1  TCCTTGTATCTGTGTGTCAGAATGTGGACGTGAGGACTTTCTAGGAGGAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTATCTGTGTGTCAGAATGTGGACGTGAGGACTTTCTAGGAGGAA  399

seq1  ACACGAGGATGGTTTAGTGAGGATGTCAGTGGTACTTGCGTCAATGAATC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAGGATGGTTTAGTGAGGATGTCAGTGGTACTTGCGTCAATGAATC  449

seq1  CTCTCAGCAAGTCCAGACCCTGCCACTCCTCTTTCCCTGGCAGGCTGCTC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCAAGTCCAGACCCTGCCACTCCTCTTTCCCTGGCAGGCTGCTC  499

seq1  TGCTTACATGTATTTGGCAAAAGAGAAGGACAATCTGCTTTTTTTTTCTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACATGTATTTGGCAAAAGAGAAGGACAATCTGCTTTTTTTTTCTT  549

seq1  TTTGGTTTTCTGGTCTCAGATAGCCCAAGTTGACCTCAAACGTATTATCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTCTGGTCTCAGATAGCCCAAGTTGACCTCAAACGTATTATCT  599

seq1  AACAGAGGCTGCTCATAAACTTCTGTTATCCCCACATTTGCTCCTAAGGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGCTGCTCATAAACTTCTGTTATCCCCACATTTGCTCCTAAGGT  649

seq1  TGGAGACATGTACAAGCATGCCTGCCTTTTTAACTTTGTATAGTCTTGAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACATGTACAAGCATGCCTGCCTTTTTAACTTTGTATAGTCTTGAT  699

seq1  AGAAAGTATTTACATTTATACACACACGCACGCACACACACACACACACA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTATTTACATTTATACACACACGCACGCACACACACACACACACA  749

seq1  CACACACACACGTGTGAAGGGTATGTGCATATGTGGGTATGCACATATGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACGTGTGAAGGGTATGTGCATATGTGGGTATGCACATATGA  799

seq1  GTATGGGTACCCATGGAGTCTAGAGGTGACAGATCCCCCTAGAAGATGAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGTACCCATGGAGTCTAGAGGTGACAGATCCCCCTAGAAGATGAA  849

seq1  GTTATTGGTAGTTGTGAACTATCAGACATAGGTTCTGGGAATGAAACTTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGGTAGTTGTGAACTATCAGACATAGGTTCTGGGAATGAAACTTG  899

seq1  AGTCCTCTGCAAGAGGGTATCAGCTCTTAACCACTGAGCCATTTCTCCAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTGCAAGAGGGTATCAGCTCTTAACCACTGAGCCATTTCTCCAG  949

seq1  TCCCTTTAAAATCTTTCTTCTTCCTTTAGTTCTTTTTCTTTGTTTTTTTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAAAATCTTTCTTCTTCCTTTAGTTCTTTTTCTTTGTTTTTTTT  999

seq1  TAAGATAGGGTTTTTTCTGTGTATCCTTGGCTTTCATGGAACTCACTAGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGGGTTTTTTCTGTGTATCCTTGGCTTTCATGGAACTCACTAGG  1049

seq1  CTGACTTTGAATTC  1052
      ||||||||||||||
seq2  CTGACTTTGAATTC  1063

seq1: chr11_4179513_4180568
seq2: B6Ng01-200H09.g_70_1127

seq1  GAATTCCTCAGGCTGTCATGGGTGCAGCTAGGGAGCCCCTCACTGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGGCTGTCATGGGTGCAGCTAGGGAGCCCCTCACTGCTGGC  50

seq1  AAAAAGCCTTGTTACATTCAGCACTTGGAGGGGAACCTCGGGGGTTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCTTGTTACATTCAGCACTTGGAGGGGAACCTCGGGGGTTAGGT  100

seq1  TCAATCCAGATGACAGGAGCAGAGGAGCCTTAAGGCACAGGCCCCGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCAGATGACAGGAGCAGAGGAGCCTTAAGGCACAGGCCCCGTGGC  150

seq1  TTCTACTAAGTTCCTTGAATTCTAGGGTCCACAGCCTCCTCCTAAGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTAAGTTCCTTGAATTCTAGGGTCCACAGCCTCCTCCTAAGTCCC  200

seq1  AGGGCAAGCAGCTGCGACAAGGCTCCATCCAGCCAGGTAGCACCTGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAAGCAGCTGCGACAAGGCTCCATCCAGCCAGGTAGCACCTGCATG  250

seq1  TCAGTGCCCCACCTGCTACAAGCATCATGAATTTTGGGAATCCCCACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCCCACCTGCTACAAGCATCATGAATTTTGGGAATCCCCACACC  300

seq1  CACACTGTCATAGAAACTGTCAGAAGGCTAAGCCCAGCTCTCCTATAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTCATAGAAACTGTCAGAAGGCTAAGCCCAGCTCTCCTATAGGG  350

seq1  TAGAAGAGGAGCTTAGGTGTCTCCCAGTCTAATGAAGAAAGCTCTCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGGAGCTTAGGTGTCTCCCAGTCTAATGAAGAAAGCTCTCTGCA  400

seq1  GACTCCGTGCCCTGGTGCAGGGAGGTCCAGCTTCCTGGAAGCATAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGTGCCCTGGTGCAGGGAGGTCCAGCTTCCTGGAAGCATAGAAGG  450

seq1  CCAGGCCGAGGGAGACAGAGGCTGTTGGAGGGGGCTGGGCATGAGGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCGAGGGAGACAGAGGCTGTTGGAGGGGGCTGGGCATGAGGTCAG  500

seq1  GCCCACGTCAGCCCTTCTCTCTTTCTCTTAACGTGGCTGGGAAGAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACGTCAGCCCTTCTCTCTTTCTCTTAACGTGGCTGGGAAGAGGCTG  550

seq1  CTGAGCCGGTGCCAGCCACAGAGGAGGTCTGTCCCTTGCTTTGGGGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCGGTGCCAGCCACAGAGGAGGTCTGTCCCTTGCTTTGGGGCCAG  600

seq1  ACCACAGGCAGCTATGCTGGGCCTCAGCCAGGCCCAGAGGAGGGGCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGGCAGCTATGCTGGGCCTCAGCCAGGCCCAGAGGAGGGGCATTC  650

seq1  TCAGCCCCCAGCTCCTCTCTGTCTGGGCCTTGGGACCCCTCCCCATCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCCAGCTCCTCTCTGTCTGGGCCTTGGGACCCCTCCCCATCCCA  700

seq1  GATCTCAGCAGCGGTCCAGGGCTCTTCCAAGCAGGTGAGGTCATTGTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGCAGCGGTCCAGGGCTCTTCCAAGCAGGTGAGGTCATTGTCTC  750

seq1  CACCAGACCAGCCTGACGTAAAGAAGTCAGCCACCCACATGGCAGGGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGACCAGCCTGACGTAAAGAAGTCAGCCACCCACATGGCAGGGTGC  800

seq1  ATACACCCGGGTGCCCCTCTCCCTGTGGCAGCCCCGGGCCCCTGACTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCCGGGTGCCCCTCTCCCTGTGGCAGCCCCGGGCCCCTGACTCTC  850

seq1  -TCCAAGGGACCTGCAGGAATCCACTCCAACACC-TGCTGGAGGTAGAGG  898
       ||||||||||||||||| ||||||||||||||| ||||||| |||||||
seq2  TTCCAAGGGACCTGCAGG-ATCCACTCCAACACCTTGCTGGA-GTAGAGG  898

seq1  TGGGTGGGC-TGAGAAAGAAAGAAAGAAGAGATGGTCT-GTAGGGCCTTC  946
      ||||||||| |||| |||||   ||||||||||||||| |||||||||||
seq2  TGGGTGGGCTTGAG-AAGAA--GAAGAAGAGATGGTCTGGTAGGGCCTTC  945

seq1  AGAGCCGGCCTGTGTCCTGCAGAACAAGCCCG-AGT-GAACCTGGAGTCA  994
      |||||| | |||||||||||| ||| |||||| ||| ||||||||||  |
seq2  AGAGCCCGGCTGTGTCCTGCAAAAC-AGCCCGAAGTGGAACCTGGAGCTA  994

seq1  ATTTGAAGCAG-ACAGGTTCTGGAACCTTCC-CTTCAGCA-GCGTTACAT  1041
      ||||| ||||| ||||||||||||||||||| |||||||| |||| ||||
seq2  ATTTG-AGCAGAACAGGTTCTGGAACCTTCCTCTTCAGCAGGCGTAACAT  1043

seq1  ACGTGCCCACGGGAC  1056
      |||||| ||||||||
seq2  ACGTGCACACGGGAC  1058