BAC Information

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BAC

Clone NameB6Ng01-202H03
Chromosome11 (Build37)
Map Location 97,046,822 - 97,188,404
singlet/doubletdoublet
Overlap geneKpnb1, Npepps, EG665490, Mrpl45
Upstream geneHoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1
Downstream geneGpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202H03.bB6Ng01-202H03.g
ACCGA022935GA022936
length1,048837
definitionB6Ng01-202H03.b B6Ng01-202H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,046,822 - 97,047,883)(97,187,569 - 97,188,404)
sequence
gaattcttgaaaagtatattaaaaaaaaaaaaatcttgttcaaaaacatc
aggacagccctgtgatctcatgtaaggcatcctttctaacatatgtgtgc
cagtctaacatacatgtaagaccgagtcctccgtgttttagttctgcatg
ttcaacaaaagggatctgtaagccaaagtgttaactagttttcagaaatt
gaaagaatatgacaatgtgaatgatgaattgtcaagagaaattggtttca
tcccagcacttaggaggcagaggcaggtggatttcagagttgggagacca
gtctggtctacagaaagtgagttccaggatagtcagggctatatagagaa
atcctgtcttgactcccccccgcccaaaaaaaaaaaaaaaaaaaagagag
aggggaaaaaaaaaaaaaaactggcttcatttagaagcagaacataccag
ggagcctatggtgttttggacctaatgtgaactaacaatgaatcatccaa
aaatctatgttttgaaatacaggtccaaaagataatcatctataacaccc
cccttcctctttctgagcatacagaggcacacacaggggggtgggcctgt
acgtaatctgtccaatcaggaatgttatagaaggccaaagtagacacttt
ttttagtgttagcaaactcttcaaacacaggagataattctcaatgtaag
caaactctacagtaggctcagaacacaattctccaatttctattctgtgc
cactgaagagttaggagcaggaaaaagggcttcttgcaaagtagcaaaag
caaaaccaagaatatactatgagcagaattctcagtctacactaaaaagg
aaatgcttggaaaaggtgtgagataaaaaaaccttaacacaagtcgctta
cctctccaccaaaagtggtcagtacaaatcagatatgtcgctgtatggat
gtactatttgcaagctctcacaaaggacatgggtacatgtttttttcact
ttaaaactctacttaagagactttcatatcatcacgctctccctcccc
gaattccaacctgggattgcttgttcttgatcacactacccaggaggaag
cctgagatctcactgcttagatctcaccggtgctttctggcatccctgag
gctgtctttactgtacttcacacggagtaaagaaaggccggagcgaacag
tgatcctacctgccgagtgtgtaggcgcacagtgacctggccatacatgt
tgctctggttcaccaggcctgagcaacggacatgaaccacttgggctggc
tctagagattccacaaagccccagcgtacagtcttgtacttgaggtccca
gaccatgtcctgagggagaagagaagagttcactggggttcccctcctgt
gaggcactgcccagacaatgctgcaaccaacaggaagtgcctccattctt
tctccccattttagggtgggaatggggtggagacagggtctcagtctgta
gccagtagaaccactgatttcgtctttcaagcactagaattacagatgaa
agccattaggctcagctctctgcccaagctgctatgaatttatttttaat
tttctattttacatttttatacacatagatgttttgcttacaataaatgt
ctgtgcatcaagtgcatgcctggtatttgtggaagtcagaagagggtgta
agaggccctggaactggaattgcaggcatctgtgagctgccaagtgggtg
ctgggaactgaatctctatcctttggaaattagttagtgcttttaactac
tgagacaattctcaaactactcactgtgtttttaacctttccaatttttt
taaaacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97046822_97047883
seq2: B6Ng01-202H03.b_46_1093

seq1  GAATTCTTGAAAAGTATATTAAAAAAAAAAAAATCTTGTTCAAAAACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAAAGTATATTAAAAAAAAAAAAATCTTGTTCAAAAACATC  50

seq1  AGGACAGCCCTGTGATCTCATGTAAGGCATCCTTTCTAACATATGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCCTGTGATCTCATGTAAGGCATCCTTTCTAACATATGTGTGC  100

seq1  CAGTCTAACATACATGTAAGACCGAGTCCTCCGTGTTTTAGTTCTGCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTAACATACATGTAAGACCGAGTCCTCCGTGTTTTAGTTCTGCATG  150

seq1  TTCAACAAAAGGGATCTGTAAGCCAAAGTGTTAACTAGTTTTCAGAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAAAGGGATCTGTAAGCCAAAGTGTTAACTAGTTTTCAGAAATT  200

seq1  GAAAGAATATGACAATGTGAATGATGAATTGTCAAGAGAAATTGGTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATATGACAATGTGAATGATGAATTGTCAAGAGAAATTGGTTTCA  250

seq1  TCCCAGCACTTAGGAGGCAGAGGCAGGTGGATTTCAGAGTTGGGAGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTTAGGAGGCAGAGGCAGGTGGATTTCAGAGTTGGGAGACCA  300

seq1  GTCTGGTCTACAGAAAGTGAGTTCCAGGATAGTCAGGGCTATATAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTCTACAGAAAGTGAGTTCCAGGATAGTCAGGGCTATATAGAGAA  350

seq1  ATCCTGTCTTGACTCCCCCCCGCCCAAAAAAAAAAAAAAAAAAAAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCTTGACTCCCCCCCGCCCAAAAAAAAAAAAAAAAAAAAGAGAG  400

seq1  AGGGGAAAAAAAAAAAAAAACTGGCTTCATTTAGAAGCAGAACATACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAAAAAAAAAAAAACTGGCTTCATTTAGAAGCAGAACATACCAG  450

seq1  GGAGCCTATGGTGTTTTGGACCTAATGTGAACTAACAATGAATCATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTATGGTGTTTTGGACCTAATGTGAACTAACAATGAATCATCCAA  500

seq1  AAATCTATGTTTTGAAATACAGGTCCAAAAGATAATCATCTATAACACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATGTTTTGAAATACAGGTCCAAAAGATAATCATCTATAACACCC  550

seq1  CCCTTCCTCTTTCTGAGCATACAGAGGCACACACAGGGGGGTGGGCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTTTCTGAGCATACAGAGGCACACACAGGGGGGTGGGCCTGT  600

seq1  ACGTAATCTGTCCAATCAGGAATGTTATAGAAGGCCAAAGTAGACACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATCTGTCCAATCAGGAATGTTATAGAAGGCCAAAGTAGACACTTT  650

seq1  TTTTAGTGTTAGCAAACTCTTCAAACACAGGAGATAATTCTCAATGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGTTAGCAAACTCTTCAAACACAGGAGATAATTCTCAATGTAAG  700

seq1  CAAACTCTACAGTAGGCTCAGAACACAATTCTCCAATTTCTATTCTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTACAGTAGGCTCAGAACACAATTCTCCAATTTCTATTCTGTGC  750

seq1  CACTGAAGAGTTAGGAGCAGGAAAAAGGGCTTCTTGCAAAGTAGCAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGAGTTAGGAGCAGGAAAAAGGGCTTCTTGCAAAGTAGCAAAAG  800

seq1  CAAAACCAAGAATATACTATGAGCAGAATTCTCAGTCTACACTAAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAAGAATATACTATGAGCAGAATTCTCAGTCTACACTAAAAAGG  850

seq1  AAATGCTTGG-AAAGGTGTGAGATAAAAAAACCTTAACACAAGTCGCTTA  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTGGAAAAGGTGTGAGATAAAAAAACCTTAACACAAGTCGCTTA  900

seq1  CCTCTCCACCAAAAGTGGTCAGTACAAATCAGATATGTCGCTGTATGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCACCAAAAGTGGTCAGTACAAATCAGATATGTCGCTGTATGGAT  950

seq1  GTTACTATTTTGCAAAGCTCTCACAAAGGACATTGGGTTACAATGTTTTT  999
      | ||||| ||||| |||||||||||||||||||  || ||| ||| ||||
seq2  G-TACTA-TTTGC-AAGCTCTCACAAAGGACAT--GGGTAC-ATG-TTTT  993

seq1  TTTCACTTTTTAAAACTTCCTACCTTTAAAGAGACTTTCCATATCATCCA  1049
      ||||||  |||||||||  ||||   | |||||||||| |||||||| ||
seq2  TTTCAC--TTTAAAACT--CTAC---TTAAGAGACTTT-CATATCAT-CA  1034

seq1  CGCT-TCCCTCCCC  1062
      |||| |||||||||
seq2  CGCTCTCCCTCCCC  1048

seq1: chr11_97187569_97188404
seq2: B6Ng01-202H03.g_66_902 (reverse)

seq1  CACACACACACACACACACACACACACACATGTTTT-AAAAAATTGGAAA  49
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACACACACACACACACACACACACACACATGTTTTAAAAAAATTGGAAA  50

seq1  GGTTAAAAACACAGTGAGTAGTTTGAGAATTGTCTCAGTAGTTAAAAGCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAAACACAGTGAGTAGTTTGAGAATTGTCTCAGTAGTTAAAAGCA  100

seq1  CTAACTAATTTCCAAAGGATAGAGATTCAGTTCCCAGCACCCACTTGGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAATTTCCAAAGGATAGAGATTCAGTTCCCAGCACCCACTTGGCA  150

seq1  GCTCACAGATGCCTGCAATTCCAGTTCCAGGGCCTCTTACACCCTCTTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGATGCCTGCAATTCCAGTTCCAGGGCCTCTTACACCCTCTTCT  200

seq1  GACTTCCACAAATACCAGGCATGCACTTGATGCACAGACATTTATTGTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCACAAATACCAGGCATGCACTTGATGCACAGACATTTATTGTAA  250

seq1  GCAAAACATCTATGTGTATAAAAATGTAAAATAGAAAATTAAAAATAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACATCTATGTGTATAAAAATGTAAAATAGAAAATTAAAAATAAAT  300

seq1  TCATAGCAGCTTGGGCAGAGAGCTGAGCCTAATGGCTTTCATCTGTAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCAGCTTGGGCAGAGAGCTGAGCCTAATGGCTTTCATCTGTAATT  350

seq1  CTAGTGCTTGAAAGACGAAATCAGTGGTTCTACTGGCTACAGACTGAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTTGAAAGACGAAATCAGTGGTTCTACTGGCTACAGACTGAGAC  400

seq1  CCTGTCTCCACCCCATTCCCACCCTAAAATGGGGAGAAAGAATGGAGGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCCACCCCATTCCCACCCTAAAATGGGGAGAAAGAATGGAGGCA  450

seq1  CTTCCTGTTGGTTGCAGCATTGTCTGGGCAGTGCCTCACAGGAGGGGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTTGGTTGCAGCATTGTCTGGGCAGTGCCTCACAGGAGGGGAAC  500

seq1  CCCAGTGAACTCTTCTCTTCTCCCTCAGGACATGGTCTGGGACCTCAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGAACTCTTCTCTTCTCCCTCAGGACATGGTCTGGGACCTCAAGT  550

seq1  ACAAGACTGTACGCTGGGGCTTTGTGGAATCTCTAGAGCCAGCCCAAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACTGTACGCTGGGGCTTTGTGGAATCTCTAGAGCCAGCCCAAGTG  600

seq1  GTTCATGTCCGTTGCTCAGGCCTGGTGAACCAGAGCAACATGTATGGCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGTCCGTTGCTCAGGCCTGGTGAACCAGAGCAACATGTATGGCCA  650

seq1  GGTCACTGTGCGCCTACACACTCGGCAGGTAGGATCACTGTTCGCTCCGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGTGCGCCTACACACTCGGCAGGTAGGATCACTGTTCGCTCCGG  700

seq1  CCTTTCTTTACTCCGTGTGAAGTACAGTAAAGACAGCCTCAGGGATGCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTACTCCGTGTGAAGTACAGTAAAGACAGCCTCAGGGATGCCA  750

seq1  GAAAGCACCGGTGAGATCTAAGCAGTGAGATCTCAGGCTTCCTCCTGGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACCGGTGAGATCTAAGCAGTGAGATCTCAGGCTTCCTCCTGGGT  800

seq1  AGTGTGATCAAGAACAAGCAATCCCAGGTTGGAATTC  836
      |||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATCAAGAACAAGCAATCCCAGGTTGGAATTC  837