BAC Information

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BAC

Clone NameB6Ng01-204P20
Chromosome11 (Build37)
Map Location 15,556,979 - 15,712,671
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042542, LOC100041673, LOC432537
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204P20.bB6Ng01-204P20.g
ACCGA024788GA024789
length8081,123
definitionB6Ng01-204P20.b B6Ng01-204P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,711,870 - 15,712,671)(15,556,979 - 15,558,081)
sequence
gaattccatttgtttcccttgcctactgatggaaccaattgtgccattgt
cctggacaagcaggagaaatgagttgaaaattatccttctgctcatgtct
aatgggtaaagatagttcaatttacacacgttttcaacgatttccttcat
ggagttccattctctaatgtgtttacaatgtcctttggctattgggttat
ttgtagtttccccatttctagaagttctttatgtcaaatagactgctttc
tttgataggcgttgtcagagtatgctcagttctggggctgaccttcctca
caggaaacaaaaagctttctgttatgaaactcaaataatctatttcttat
ctttgataattttaagattgattttaacaaaatatacaataacacaataa
aaattcagttccctgtgtatttttttaaataaatgttcagtgtatagtta
gacatctatctccacgaccacatgaccaatatttgaatatttcatgacct
gaaatggttaatacatatatggtaatgcaactcatgatccattacttaat
ttaaaaaatgaccttcatgctgttttacaaagttaatcatgctgtaaatt
ttctttctatgtcctttgttgctacgctgtgttgccatgtcctttatatg
tgtgtacatttgtgcgtatgtttagtttgtgaggatttaaatggtttata
tatgggtttagatgaagctttaatttttatattttggatgtgtgcatttt
gcataagagaattttgtatgtgtatgttttatacatgtggtatggtgttt
ggttgtgt

gaattcagcatataaaccagtcccaaggatgacaaggtgaagtaatgagt
ggcttcaagataatttcagtaatgactggaaaacacatggcctacagttt
gtcatgtttatgactgacaaaaagaaaatgagaatgtggtttctacaatt
actctcaagtaggaagagaatgaacaacgaacgtcagtaagattctgaag
cttggcgtcattgaggaaaattttagttacaaacatacttatttcaaatg
tctactaaatcagattgcttccaaatcaatcaatattttatagctaccca
aggatacttggaaattagcaagtcactcaggaattctccaaatgagttca
tgaataaatttttgaggctatttaaagaaatttaaaaaaaagaaaactga
agttctgtgaggtttttgaagtttgacaagtaattattagacttgtaagt
gtaagaagaatgctgtactgatgtgtagcacaacagaggctggcttgctt
agcagcacctcattaaagctgaaagatggctccttagaggtggatgtgag
aatagactcacaaagacaaatcagtctgacaaggcatccatggacaagtt
tcagaaaagaataagaccgaaatgatggattgatgcctgattaaacaaac
tattctaaaaaactgattaatgagcagatttccatatatagagatggttt
ctggtagaggcctaccaactttaaccttcactatactcttttcaacatct
catcaaacttcttgagcaatcatacaaaaagcatgattatctaattgatt
gtgactagtaggtaagtggtacagcaaatatattaagtcaatttcttaga
gtattcaggagaactccttaaaattaagttggcaaattgacacaaaacag
agacccaatgggagaaacaacctgaaagcacaatcagcagaaaagaaaga
atggatgttcaccaagcagaagaatacgcaggtcttgttcaacttttatt
catgaccaggaggatactatgatttatggattccaatgcctgtaagaaag
ttgaaaaattgaacctgactctgaaaatcagagagagaaattggggaaat
tatatatatggaaccactttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_15711870_15712671
seq2: B6Ng01-204P20.b_43_850 (reverse)

seq1  ACACACACCAAACA-CATA-CACATGTAT-AAACATACACATAC-AAATT  46
      ||||| |||||||| |||| ||||||||| |||||||||||||| |||||
seq2  ACACA-ACCAAACACCATACCACATGTATAAAACATACACATACAAAATT  49

seq1  CTCTTATGC-AAATGCACACATCC-AAATAT-AAAATTAAAGCTTCATCT  93
      ||||||||| |||||||||||||| |||||| ||||||||||||||||||
seq2  CTCTTATGCAAAATGCACACATCCAAAATATAAAAATTAAAGCTTCATCT  99

seq1  AAACCCATATATAAACCATTTAAATCCTCACAAACTAAACATACGCACAA  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATATATAAACCATTTAAATCCTCACAAACTAAACATACGCACAA  149

seq1  ATGTACACACATATAAAGGACATGGCAACACAGCGTAGCAACAAAGGACA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACACATATAAAGGACATGGCAACACAGCGTAGCAACAAAGGACA  199

seq1  TAGAAAGAAAATTTACAGCATGATTAACTTTGTAAAACAGCATGAAGGTC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAAAATTTACAGCATGATTAACTTTGTAAAACAGCATGAAGGTC  249

seq1  ATTTTTTAAATTAAGTAATGGATCATGAGTTGCATTACCATATATGTATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAATTAAGTAATGGATCATGAGTTGCATTACCATATATGTATT  299

seq1  AACCATTTCAGGTCATGAAATATTCAAATATTGGTCATGTGGTCGTGGAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTCAGGTCATGAAATATTCAAATATTGGTCATGTGGTCGTGGAG  349

seq1  ATAGATGTCTAACTATACACTGAACATTTATTTAAAAAAATACACAGGGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTCTAACTATACACTGAACATTTATTTAAAAAAATACACAGGGA  399

seq1  ACTGAATTTTTATTGTGTTATTGTATATTTTGTTAAAATCAATCTTAAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTTTTATTGTGTTATTGTATATTTTGTTAAAATCAATCTTAAAA  449

seq1  TTATCAAAGATAAGAAATAGATTATTTGAGTTTCATAACAGAAAGCTTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAGATAAGAAATAGATTATTTGAGTTTCATAACAGAAAGCTTTT  499

seq1  TGTTTCCTGTGAGGAAGGTCAGCCCCAGAACTGAGCATACTCTGACAACG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTGTGAGGAAGGTCAGCCCCAGAACTGAGCATACTCTGACAACG  549

seq1  CCTATCAAAGAAAGCAGTCTATTTGACATAAAGAACTTCTAGAAATGGGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAAAGAAAGCAGTCTATTTGACATAAAGAACTTCTAGAAATGGGG  599

seq1  AAACTACAAATAACCCAATAGCCAAAGGACATTGTAAACACATTAGAGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACAAATAACCCAATAGCCAAAGGACATTGTAAACACATTAGAGAA  649

seq1  TGGAACTCCATGAAGGAAATCGTTGAAAACGTGTGTAAATTGAACTATCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCCATGAAGGAAATCGTTGAAAACGTGTGTAAATTGAACTATCT  699

seq1  TTACCCATTAGACATGAGCAGAAGGATAATTTTCAACTCATTTCTCCTGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCATTAGACATGAGCAGAAGGATAATTTTCAACTCATTTCTCCTGC  749

seq1  TTGTCCAGGACAATGGCACAATTGGTTCCATCAGTAGGCAAGGGAAACAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAGGACAATGGCACAATTGGTTCCATCAGTAGGCAAGGGAAACAA  799

seq1  ATGGAATTC  802
      |||||||||
seq2  ATGGAATTC  808


seq1: chr11_15556979_15558081
seq2: B6Ng01-204P20.g_66_1188

seq1  GAATTCAGCATATAAACCAGTCCCAAGGATGACAAGGTGAAGTAATGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATATAAACCAGTCCCAAGGATGACAAGGTGAAGTAATGAGT  50

seq1  GGCTTCAAGATAATTTCAGTAATGACTGGAAAACACATGGCCTACAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAGATAATTTCAGTAATGACTGGAAAACACATGGCCTACAGTTT  100

seq1  GTCATGTTTATGACTGACAAAAAGAAAATGAGAATGTGGTTTCTACAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTTATGACTGACAAAAAGAAAATGAGAATGTGGTTTCTACAATT  150

seq1  ACTCTCAAGTAGGAAGAGAATGAACAACGAACGTCAGTAAGATTCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAAGTAGGAAGAGAATGAACAACGAACGTCAGTAAGATTCTGAAG  200

seq1  CTTGGCGTCATTGAGGAAAATTTTAGTTACAAACATACTTATTTCAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCGTCATTGAGGAAAATTTTAGTTACAAACATACTTATTTCAAATG  250

seq1  TCTACTAAATCAGATTGCTTCCAAATCAATCAATATTTTATAGCTACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTAAATCAGATTGCTTCCAAATCAATCAATATTTTATAGCTACCCA  300

seq1  AGGATACTTGGAAATTAGCAAGTCACTCAGGAATTCTCCAAATGAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTTGGAAATTAGCAAGTCACTCAGGAATTCTCCAAATGAGTTCA  350

seq1  TGAATAAATTTTTGAGGCTATTTAAAGAAATTTAAAAAAAAGAAAACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATTTTTGAGGCTATTTAAAGAAATTTAAAAAAAAGAAAACTGA  400

seq1  AGTTCTGTGAGGTTTTTGAAGTTTGACAAGTAATTATTAGACTTGTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTGAGGTTTTTGAAGTTTGACAAGTAATTATTAGACTTGTAAGT  450

seq1  GTAAGAAGAATGCTGTACTGATGTGTAGCACAACAGAGGCTGGCTTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGAATGCTGTACTGATGTGTAGCACAACAGAGGCTGGCTTGCTT  500

seq1  AGCAGCACCTCATTAAAGCTGAAAGATGGCTCCTTAGAGGTGGATGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCACCTCATTAAAGCTGAAAGATGGCTCCTTAGAGGTGGATGTGAG  550

seq1  AATAGACTCACAAAGACAAATCAGTCTGACAAGGCATCCATGGACAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTCACAAAGACAAATCAGTCTGACAAGGCATCCATGGACAAGTT  600

seq1  TCAGAAAAGAATAAGACCGAAATGATGGATTGATGCCTGATTAAACAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAGAATAAGACCGAAATGATGGATTGATGCCTGATTAAACAAAC  650

seq1  TATTCTAAAAAACTGATTAATGAGCAGATTTCCATATATAGAGATGGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAAAAAACTGATTAATGAGCAGATTTCCATATATAGAGATGGTTT  700

seq1  CTGGTAGAGGCCTACCAACTTTAACCTTCACTATACTCTTTTCAACATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGAGGCCTACCAACTTTAACCTTCACTATACTCTTTTCAACATCT  750

seq1  CATCAAACTTCTTGAGCAATCATACAAAAAGCATGATTATCTAATTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAACTTCTTGAGCAATCATACAAAAAGCATGATTATCTAATTGATT  800

seq1  GTGACTAGTAGGTAAGTGGTACAGCAAATATATTAAGTCAA-TTCTTAGA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGACTAGTAGGTAAGTGGTACAGCAAATATATTAAGTCAATTTCTTAGA  850

seq1  GTATTCA-GAGAACTCCTTAAAATTAAGTTGGCAAATTGACACAAAACAG  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGGAGAACTCCTTAAAATTAAGTTGGCAAATTGACACAAAACAG  900

seq1  AGACCCAAT-GGAGAAACAA-CTGAAAGCACAATCAGCAG-AAAGAAAGA  945
      ||||||||| |||||||||| ||||||||||||||||||| |||||||||
seq2  AGACCCAATGGGAGAAACAACCTGAAAGCACAATCAGCAGAAAAGAAAGA  950

seq1  ATGGATGTTCA-CAAGCAGAAG-ATACGCAGGTC-TGTTCAACTTT--AT  990
      ||||||||||| |||||||||| ||||||||||| |||||||||||   |
seq2  ATGGATGTTCACCAAGCAGAAGAATACGCAGGTCTTGTTCAACTTTTATT  1000

seq1  CATGACCA-GAGGATACTATGATTTAT-GATTC--ATG-CTGTAAAGAAA  1035
      |||||||| |||||||||||||||||| |||||  ||| |||| ||||||
seq2  CATGACCAGGAGGATACTATGATTTATGGATTCCAATGCCTGT-AAGAAA  1049

seq1  G-TGAAAAATTGAAACTGA--CTGAAAAACAGAGAG---AAATGGGGAAA  1079
      | |||||||||||| ||||  ||||||| |||||||   || ||||||||
seq2  GTTGAAAAATTGAACCTGACTCTGAAAATCAGAGAGAGAAATTGGGGAAA  1099

seq1  TTATA-ATATGAAACCAACTTTGAA  1103
      ||||| ||||| |||| ||||||||
seq2  TTATATATATGGAACC-ACTTTGAA  1123


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