BAC Information

Click to search

BAC

Clone NameB6Ng01-205E05
Chromosome11 (Build37)
Map Location 68,304,011 - 68,458,379
singlet/doubletdoublet
Overlap genePik3r5, BB220380, BC024997, Ccdc42
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1
Downstream geneMyh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205E05.bB6Ng01-205E05.g
ACCGA024992GA024993
length1,1761,089
definitionB6Ng01-205E05.b B6Ng01-205E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,457,191 - 68,458,379)(68,304,011 - 68,305,093)
sequence
gaattccttttctgaatttctcagcccccactgaatttgtaaatcttttc
agactccttaaagcccagctccaagcttgattcaagtctttaatcccagc
accctaggaggtagaggcacatgaatctctgagttcaaggtcagcctgat
ctacagaataagttctaggacagccagggtaacacagagaaaaccctatc
aggaaaaaacaaacaggtaagcaaacaaaaaaccacaaacaagcaacaat
aaactcaactgcaacttctataccttggggcccaggaacagagatcaaag
agagctctaggtcgggtatattgttttcctggagatttctttctgtttcc
atgggaaatggctgctcctgacaggagggttggaagtgtcttacggaggt
acgtactctgcaagaggacttagtgtcgtgcgtggccttgaagttctggc
tgcacatgggccactctgaacttggggccagtttctgcatcagacgacga
gagcagtatcagcttcatgaggctgttctgagaatgaagtgctactgaga
gtgaggcgcttgacacacagctaagcggggacttaaggaacagcttctcc
atggctgcctagtgctttgaggaaacttacttaggacctggatgacggct
atcatggaggcctcacgtaaaatacctcacgtaaaataaacgtgacatag
aaagatcccctgaaatctgacctaaaaatgcataatggtcttcattccta
agtttctctgcaggaaagctgcttcaagtcacattttacattgtacatac
aatgtaggaaaatacctacttctctaaccctgggcaacacacatctaggt
aaactcttagtactataaatcctgccccaggcatagcagcataaaaattg
tgtgtgtgtgtgtctgtccgtatgcatgagtggacatatgtacatgtaag
ccacaatgtatctgtgagtccagaggacatcttgtagttggctctctcct
tctaccacatggatcctggggactgagctcagttggggaggtttatggtg
acggcacatcacctgctgatctgtcgaacaatacattcaacctctatgac
gggcttcacttgctcctcttttttattcatttatttataccggctaattc
aaatatgaataattagcaactcttta
gaattccttgctgtggcagacaagctgagcacgcctggacagtcacccca
cggcacctacaccaccctgctcctgcatgccttccaggccacctttgggg
cccactgcgaccttcctaaactacaccgcaaacttcaggtaaaggctagg
gagcctaggtctatgaagaagtattttgctacagagagggtgagaggggt
caggaggctgggagcccttggtctggtactgcaaactgggagaggcgggc
caggaacatacttgtctcctggactttcagtccaagacaatagaagagct
ggaggacatcttcaccgagacgacagaagcccaggagctggcgtctggca
ttggggatgtagcagaggcccgagagtggctccggaccaagctgcaggca
gtgggagaaaaagcgggcttccctggcatcttaggtaaggcttgagggag
ggacaatagctctgtccatttccctaccatctattctggcatgcagaggg
tgtacaccagccagcctggcagctctgttccacagagccttccaggggcc
aggttcttcagcatctgtgtgctccctgagtccccaggcagagttcctgt
gggcagatccaaggctgggttgtttgccttcatgttagcaagaggaagag
agagctcactgagagaatggtgccacttgcattactttggttatacgttt
ctgaacccacttacatcatggtcacatcttgctccaaaagaagttagaga
tgcccccctgccactcttgtcaccatagaggcgggtggcataatgtctga
gcgccagtgggcagctttcaggtactgttccctcagacaacctcttaagg
agcctagcatggtggcatgcacctgcagtctcagcactggggaggctaag
gcaggaagtttatgggtttgaggccagctagatagggagacttgtcttca
atacaaacacctcaagccagaagtggtggtaagcacttttattcccagca
cttgggaggcagaggaaggcggattctcctagtttcaaggtcagcctggt
ctactgagcagttctagggacggctagagcttacacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68457191_68458379
seq2: B6Ng01-205E05.b_42_1217 (reverse)

seq1  TAAAGA-TTGCTAATTATTACATTAATTGTGAATTAGCCGATAATAAATA  49
      |||||| |||||||||||| |||  ||| ||||||||||| | |||||| 
seq2  TAAAGAGTTGCTAATTATT-CAT--ATT-TGAATTAGCCGGT-ATAAAT-  44

seq1  AAATGAAATAAAAAGAGAAGCAAGTGAAAGGCCAGTCATAGAAGTATGAA  99
      |||||||  |||||||| ||||||||||  ||| |||||||| || ||||
seq2  AAATGAATAAAAAAGAGGAGCAAGTGAA--GCCCGTCATAGAGGT-TGAA  91

seq1  TGGTATTAGTCAGACAGATCAGCAGGTGATGGTGGCCGTCACATAAAAAC  149
      | ||||| ||  |||||||||||||||||||   ||||||||  | ||||
seq2  T-GTATT-GTTCGACAGATCAGCAGGTGATG--TGCCGTCAC-CATAAAC  136

seq1  CTCCCAACCTGAGCTCAGTCCCCAGGATCCATGTGGTAGAAGGAGAGAGC  199
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAACTGAGCTCAGTCCCCAGGATCCATGTGGTAGAAGGAGAGAGC  186

seq1  CAACTACAAGATGTCCTCTGGACTCACAGATACATTGTGGCTTACATGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACAAGATGTCCTCTGGACTCACAGATACATTGTGGCTTACATGTA  236

seq1  CATATGTCCACTCATGCATACGGACAGACACACACACACACAATTTTTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCCACTCATGCATACGGACAGACACACACACACACAATTTTTAT  286

seq1  GCTGCTATGCCTGGGGCAGGATTTATAGTACTAAGAGTTTACCTAGATGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTATGCCTGGGGCAGGATTTATAGTACTAAGAGTTTACCTAGATGT  336

seq1  GTGTTGCCCAGGGTTAGAGAAGTAGGTATTTTCCTACATTGTATGTACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCCCAGGGTTAGAGAAGTAGGTATTTTCCTACATTGTATGTACAA  386

seq1  TGTAAAATGTGACTTGAAGCAGCTTTCCTGCAGAGAAACTTAGGAATGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGTGACTTGAAGCAGCTTTCCTGCAGAGAAACTTAGGAATGAA  436

seq1  GACCATTATGCATTTTTAGGTCAGATTTCAGGGGATCTTTCTATGTCACG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTATGCATTTTTAGGTCAGATTTCAGGGGATCTTTCTATGTCACG  486

seq1  TTTATTTTACGTGAGGTATTTTACGTGAGGCCTCCATGATAGCCGTCATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTACGTGAGGTATTTTACGTGAGGCCTCCATGATAGCCGTCATC  536

seq1  CAGGTCCTAAGTAAGTTTCCTCAAAGCACTAGGCAGCCATGGAGAAGCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTAAGTAAGTTTCCTCAAAGCACTAGGCAGCCATGGAGAAGCTG  586

seq1  TTCCTTAAGTCCCCGCTTAGCTGTGTGTCAAGCGCCTCACTCTCAGTAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAGTCCCCGCTTAGCTGTGTGTCAAGCGCCTCACTCTCAGTAGC  636

seq1  ACTTCATTCTCAGAACAGCCTCATGAAGCTGATACTGCTCTCGTCGTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTCTCAGAACAGCCTCATGAAGCTGATACTGCTCTCGTCGTCTG  686

seq1  ATGCAGAAACTGGCCCCAAGTTCAGAGTGGCCCATGTGCAGCCAGAACTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAACTGGCCCCAAGTTCAGAGTGGCCCATGTGCAGCCAGAACTT  736

seq1  CAAGGCCACGCACGACACTAAGTCCTCTTGCAGAGTACGTACCTCCGTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCACGCACGACACTAAGTCCTCTTGCAGAGTACGTACCTCCGTAA  786

seq1  GACACTTCCAACCCTCCTGTCAGGAGCAGCCATTTCCCATGGAAACAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCCAACCCTCCTGTCAGGAGCAGCCATTTCCCATGGAAACAGAA  836

seq1  AGAAATCTCCAGGAAAACAATATACCCGACCTAGAGCTCTCTTTGATCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTCCAGGAAAACAATATACCCGACCTAGAGCTCTCTTTGATCTC  886

seq1  TGTTCCTGGGCCCCAAGGTATAGAAGTTGCAGTTGAGTTTATTGTTGCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGGGCCCCAAGGTATAGAAGTTGCAGTTGAGTTTATTGTTGCTT  936

seq1  GTTTGTGGTTTTTTGTTTGCTTACCTGTTTGTTTTTTCCTGATAGGGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGGTTTTTTGTTTGCTTACCTGTTTGTTTTTTCCTGATAGGGTTT  986

seq1  TCTCTGTGTTACCCTGGCTGTCCTAGAACTTATTCTGTAGATCAGGCTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTTACCCTGGCTGTCCTAGAACTTATTCTGTAGATCAGGCTGA  1036

seq1  CCTTGAACTCAGAGATTCATGTGCCTCTACCTCCTAGGGTGCTGGGATTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTCAGAGATTCATGTGCCTCTACCTCCTAGGGTGCTGGGATTA  1086

seq1  AAGACTTGAATCAAGCTTGGAGCTGGGCTTTAAGGAGTCTGAAAAGATTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGAATCAAGCTTGGAGCTGGGCTTTAAGGAGTCTGAAAAGATTT  1136

seq1  ACAAATTCAGTGGGGGCTGAGAAATTCAGAAAAGGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCAGTGGGGGCTGAGAAATTCAGAAAAGGAATTC  1176

seq1: chr11_68304011_68305093
seq2: B6Ng01-205E05.g_67_1155

seq1  GAATTCCTTGCTGTGGCAGACAAGCTGAGCACGCCTGGACAGTCACCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCTGTGGCAGACAAGCTGAGCACGCCTGGACAGTCACCCCA  50

seq1  CGGCACCTACACCACCCTGCTCCTGCATGCCTTCCAGGCCACCTTTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACCTACACCACCCTGCTCCTGCATGCCTTCCAGGCCACCTTTGGGG  100

seq1  CCCACTGCGACCTTCCTAAACTACACCGCAAACTTCAGGTAAAGGCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCGACCTTCCTAAACTACACCGCAAACTTCAGGTAAAGGCTAGG  150

seq1  GAGCCTAGGTCTATGAAGAAGTATTTTGCTACAGAGAGGGTGAGAGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAGGTCTATGAAGAAGTATTTTGCTACAGAGAGGGTGAGAGGGGT  200

seq1  CAGGAGGCTGGGAGCCCTTGGTCTGGTACTGCAAACTGGGAGAGGCGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCTGGGAGCCCTTGGTCTGGTACTGCAAACTGGGAGAGGCGGGC  250

seq1  CAGGAACATACTTGTCTCCTGGACTTTCAGTCCAAGACAATAGAAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACATACTTGTCTCCTGGACTTTCAGTCCAAGACAATAGAAGAGCT  300

seq1  GGAGGACATCTTCACCGAGACGACAGAAGCCCAGGAGCTGGCGTCTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACATCTTCACCGAGACGACAGAAGCCCAGGAGCTGGCGTCTGGCA  350

seq1  TTGGGGATGTAGCAGAGGCCCGAGAGTGGCTCCGGACCAAGCTGCAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATGTAGCAGAGGCCCGAGAGTGGCTCCGGACCAAGCTGCAGGCA  400

seq1  GTGGGAGAAAAAGCGGGCTTCCCTGGCATCTTAGGTAAGGCTTGAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAAAAAGCGGGCTTCCCTGGCATCTTAGGTAAGGCTTGAGGGAG  450

seq1  GGACAATAGCTCTGTCCATTTCCCTACCATCTATTCTGGCATGCAGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATAGCTCTGTCCATTTCCCTACCATCTATTCTGGCATGCAGAGGG  500

seq1  TGTACACCAGCCAGCCTGGCAGCTCTGTTCCACAGAGCCTTCCAGGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACCAGCCAGCCTGGCAGCTCTGTTCCACAGAGCCTTCCAGGGGCC  550

seq1  AGGTTCTTCAGCATCTGTGTGCTCCCTGAGTCCCCAGGCAGAGTTCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTCAGCATCTGTGTGCTCCCTGAGTCCCCAGGCAGAGTTCCTGT  600

seq1  GGGCAGATCCAAGGCTGGGTTGTTTGCCTTCATGTTAGCAAGAGGAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGATCCAAGGCTGGGTTGTTTGCCTTCATGTTAGCAAGAGGAAGAG  650

seq1  AGAGCTCACTGAGAGAATGGTGCCACTTGCATTACTTTGG-TATACGTTT  699
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAGCTCACTGAGAGAATGGTGCCACTTGCATTACTTTGGTTATACGTTT  700

seq1  CTGAACCCACTTACATCATGGTCACATCTTGCTCCAAAAGAAGTTAGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCACTTACATCATGGTCACATCTTGCTCCAAAAGAAGTTAGAGA  750

seq1  TGCCCCCCTGCCACTCTTGTCACCATAGAGGCGGGTGGCATAATGTCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCCTGCCACTCTTGTCACCATAGAGGCGGGTGGCATAATGTCTGA  800

seq1  GCGCCAGTGGGCAGC-TTCAGGTACTGTT-CCTCAGACAACCTCTTAAGG  847
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  GCGCCAGTGGGCAGCTTTCAGGTACTGTTCCCTCAGACAACCTCTTAAGG  850

seq1  AGCCTAGCATGGTGGCATGCACCTGCAGTCTCAGCACTGGGGAGGCTAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGCATGGTGGCATGCACCTGCAGTCTCAGCACTGGGGAGGCTAAG  900

seq1  GCAGGAAGTTTATGGGTTTGAGGCCAGCTAGATAGGGAGACCTTGTC-TC  946
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  GCAGGAAGTTTATGGGTTTGAGGCCAGCTAGATAGGGAGA-CTTGTCTTC  949

seq1  AAAACAAACACC-CAAGCCAGAAGGTGGTGGTAAGCACCTTTAATCCCAG  995
      || ||||||||| |||||||||| |||||||||||||| |||| ||||||
seq2  AATACAAACACCTCAAGCCAGAA-GTGGTGGTAAGCACTTTTATTCCCAG  998

seq1  CACTTGGGAGGCAGAGGGAGGCGGA-TCTCCTAG-TTCAAGGCCAGCCTG  1043
      ||||||||||||||||| ||||||| |||||||| ||||||| |||||||
seq2  CACTTGGGAGGCAGAGGAAGGCGGATTCTCCTAGTTTCAAGGTCAGCCTG  1048

seq1  GTCTACAGAGCAAGTTCTA-GGACAGCCAGAGC-TACACAGA  1083
      |||||| |||| ||||||| |||| || ||||| ||||||||
seq2  GTCTACTGAGC-AGTTCTAGGGACGGCTAGAGCTTACACAGA  1089