BAC Information

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BAC

Clone NameB6Ng01-205J23
Chromosome11 (Build37)
Map Location 116,971,842 - 117,091,887
singlet/doubletdoublet
Overlap geneLOC100042036, Sec14l1
Upstream geneTrim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
Downstream geneSept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205J23.bB6Ng01-205J23.g
ACCGA025256GA025257
length509238
definitionB6Ng01-205J23.b B6Ng01-205J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,971,842 - 116,972,355)(117,091,650 - 117,091,887)
sequence
tgcccttggccttctctttgcctctgtgtgctagggtgtgtgtgcataca
tgctcttaggggtaaaacagtcccaccactgacttcatcttggataaccc
ctatttcaccaagttccctctgtgaggccttctgaaccccaacaagcagg
ggctattttttcctatgacatatttccctttttctttctttctttttttg
ttttttttaaaagaattattcatttaatgtaaacgagtacactatagctg
tcttcagacacaccagaagagggcatcagatctcattacagatggttgtg
agccaccatgtggttgctgggatttgaactcaggacctctggaagagcag
tcactgaccttaacagctgagccatctagccagcccccctttttcttttt
gaaaatgtcttagccgggcatgggggcgcacgcctttaatcccagcactt
gggaggcagaggcaggaggatttctgagttctaggccatcctgggtctac
agagtgagt
acatcctagaacccagaactgaggccttgttaggaacaggacgttacaag
aagtgaggggttttgaggtgaggatcttgtgagccacctgagaaccccag
gacaaggtcctgccccagatcttcacagcgtcaagccagccccgagggga
ggggctcatacgcctcccacccctaactgaggggcaacagacatttgact
gttgctaggagtggaagagttaggggtttgggggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116971842_116972355
seq2: B6Ng01-205J23.b_48_562

seq1  GAATTCTGCCCTTGGCCTTCTCTTTGCCTCTGTGTGCTAGGGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTTGGCCTTCTCTTTGCCTCTGTGTGCTAGGGTGTGTGTG  50

seq1  CATACATGCTCTTAGGGGTAAAACAGTCCCACCACTGACTTCATCTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGCTCTTAGGGGTAAAACAGTCCCACCACTGACTTCATCTTGGA  100

seq1  TAACCCCTATTTCACCAAGTTCCCTCTGTGAGGCCTTCTGAACCCCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCTATTTCACCAAGTTCCCTCTGTGAGGCCTTCTGAACCCCAACA  150

seq1  AGCAGGGGCTATTTTTTCCTATGACATATTTCCCTTTTTCTTTCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGCTATTTTTTCCTATGACATATTTCCCTTTTTCTTTCTTTCTT  200

seq1  TTTTTGTTTTTTTTAAAAGAATTATTCATTTAATGTAAACGAGTACACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTTTAAAAGAATTATTCATTTAATGTAAACGAGTACACTA  250

seq1  TAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATG  300

seq1  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAA  350

seq1  GAGCAGTCACTGACCTTAACAGCTGAGCCATCTAGCCAGCCCCCCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCACTGACCTTAACAGCTGAGCCATCTAGCCAGCCCCCCTTTTT  400

seq1  CTTTTTGAAAATGTCTTAGCCGGGCATGGGGGCGCACGCCTTTAATCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGAAAATGTCTTAGCCGGGCATGGGGGCGCACGCCTTTAATCCCA  450

seq1  GCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCT-G  499
      ||||||||||||||||||||||||||||||||||||| |||||| ||| |
seq2  GCACTTGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCTAGGCCATCCTGG  500

seq1  GTCTACAGAGTGAGT  514
      |||||||||||||||
seq2  GTCTACAGAGTGAGT  515

seq1: chr11_117091650_117091887
seq2: B6Ng01-205J23.g_75_312 (reverse)

seq1  AAAACCCCCAAACCCCTAACTCTTCCACTCCTAGCAACAGTCAAATGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCCAAACCCCTAACTCTTCCACTCCTAGCAACAGTCAAATGTCT  50

seq1  GTTGCCCCTCAGTTAGGGGTGGGAGGCGTATGAGCCCCTCCCCTCGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCCTCAGTTAGGGGTGGGAGGCGTATGAGCCCCTCCCCTCGGGGC  100

seq1  TGGCTTGACGCTGTGAAGATCTGGGGCAGGACCTTGTCCTGGGGTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGACGCTGTGAAGATCTGGGGCAGGACCTTGTCCTGGGGTTCTCA  150

seq1  GGTGGCTCACAAGATCCTCACCTCAAAACCCCTCACTTCTTGTAACGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACAAGATCCTCACCTCAAAACCCCTCACTTCTTGTAACGTCC  200

seq1  TGTTCCTAACAAGGCCTCAGTTCTGGGTTCTAGGATGT  238
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTAACAAGGCCTCAGTTCTGGGTTCTAGGATGT  238