BAC Information

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BAC

Clone NameB6Ng01-205O07
Chromosome11 (Build37)
Map Location 54,465,362 - 54,613,959
singlet/doubletdoublet
Overlap geneRapgef6, Cdc42se2, LOC677786
Upstream geneRad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
Downstream geneLOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205O07.bB6Ng01-205O07.g
ACCGA025450GA025451
length3541,114
definitionB6Ng01-205O07.b B6Ng01-205O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,465,362 - 54,465,715)(54,612,861 - 54,613,959)
sequence
cactcatgaggtagtactcttgtactggtgtgaagccttttagttatttt
tcttgactacatatgtttttgttttcatacagagtcagaatatacatgcc
actttacaacttatgaaaagttttttgaaattttttttcttactctgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgatggtaaatgtgtcatggaat
gcttgtgaaagtattttttttaatctagcataaattgaagcttaaagaat
tcagagtatgaaactaggaatttagctcggttgttagagtgctcacttaa
catataaaagacctgaagctttcttaggtgtcatggtggcacaggcttgt
aacc
gaattccagggcagccagggctatgcagagagaccctgactcaaaaacca
accaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaa
caaacaaacacaataatgagtgtgtttgtagtgcattcttgtttcactat
tttcagaccttagttttgcacactagttatattgattgagacaaaaacaa
acatgtgggctctcaagagtttatttcaaggtctgtgaggatcataaatg
tttagtcaacaagtagttattttagagaccagtatatgttctcccgtgag
acttcatagtttctggggaccactcttctttgcttttatttctttatgtt
atgaaatttgaaatcagaagtcagtgtattgcttataccctggtcccctg
attgaagtgtgagtctttataactaagaaccaatggcttgaaaaaactct
taagtttggtctttatcagagtgtaatgtatatgtatgtatattttcata
tatctgtagttattctcttttcctttatgtatacttattttataattaat
gaagaatggaagagatttgattgaaatatttctttaaatgtctaatactg
aatttggctgatctcatgcccatagcttcatgttgccattgaacccctga
acataattactttaaactgagatatgttgtaaataataaaacaaaaacaa
aagcacatggggcgaatgagatggctcagcaggaaaaggagttttcacca
cacctgctgtcctgagttaagccctggaaggacagaattcattcccacaa
gctcccatatatgtacccatgacacaccgctgcatcatgaacatatacac
tgtccttggttatcatttcactgttgacagaacctagagtcacccaggga
aaaaaatctcagtgaagtaattgtctttaccactcgggtctggtggactt
gtctggcagaccattggcttttttttttttttttttattttatccattaa
aggtaagtcactcgttagctgtctttaaacccctcgaagagggctcgatt
ctatttacggatggtggtgagccaccccgtggtttgctgaaattttgaac
ttagcgacctatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54465362_54465715
seq2: B6Ng01-205O07.b_52_405

seq1  CACTCATGAGGTAGTACTCTTGTACTGGTGTGAAGCCTTTTAGTTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGAGGTAGTACTCTTGTACTGGTGTGAAGCCTTTTAGTTATTTT  50

seq1  TCTTGACTACATATGTTTTTGTTTTCATACAGAGTCAGAATATACATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTACATATGTTTTTGTTTTCATACAGAGTCAGAATATACATGCC  100

seq1  ACTTTACAACTTATGAAAAGTTTTTTGAAATTTTTTTTCTTACTCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAACTTATGAAAAGTTTTTTGAAATTTTTTTTCTTACTCTGTGT  150

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGGTAAATGTGTCATGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGGTAAATGTGTCATGGAAT  200

seq1  GCTTGTGAAAGTATTTTTTTTAATCTAGCATAAATTGAAGCTTAAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGAAAGTATTTTTTTTAATCTAGCATAAATTGAAGCTTAAAGAAT  250

seq1  TCAGAGTATGAAACTAGGAATTTAGCTCGGTTGTTAGAGTGCTCACTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTATGAAACTAGGAATTTAGCTCGGTTGTTAGAGTGCTCACTTAA  300

seq1  CATATAAAAGACCTGAAGCTTTCGTAGGTGTCATGGTGGCACAGGCTTGT  350
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATATAAAAGACCTGAAGCTTTCTTAGGTGTCATGGTGGCACAGGCTTGT  350

seq1  AACC  354
      ||||
seq2  AACC  354

seq1: chr11_54612861_54613959
seq2: B6Ng01-205O07.g_67_1180 (reverse)

seq1  CCATAGGTC-CTGAGTTC-AAATCTCAGC-AACCACGTGGTGGCTCACAA  47
      ||||||||| || ||||| |||| ||||| ||||||| |||||||||| |
seq2  CCATAGGTCGCTAAGTTCAAAATTTCAGCAAACCACGGGGTGGCTCACCA  50

seq1  CCATCCGTAATGAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCT  97
      ||||||||||  |||   || ||||||||| |  | || | |||||||||
seq2  CCATCCGTAAATAGAATCGA-GCCCTCTTC-GAGGGGTTTAAAGACAGCT  98

seq1  ACAGTGT-ACTTACATATAATAGAT-AAATTAAAAAAAAAAAAAAAAAGG  145
      |  | || |||||| | |||| ||| |||| |||||||||||||||||| 
seq2  AACGAGTGACTTACCTTTAATGGATAAAATAAAAAAAAAAAAAAAAAAGC  148

seq1  CAAT-GTCTGCCAGACAAGTCCA-CAGACCCGAGTGGTAAAGACAATTAC  193
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAATGGTCTGCCAGACAAGTCCACCAGACCCGAGTGGTAAAGACAATTAC  198

seq1  TCAACTGAGACTTCTTTCCCTGGGTGACTCTAGGTTCTGTCAACAGTG-A  242
      |  ||||||| || |||||||||||||||||||||||||||||||||| |
seq2  TTCACTGAGATTTTTTTCCCTGGGTGACTCTAGGTTCTGTCAACAGTGAA  248

seq1  ATGATAACCAA-GACAGTGTATATGTTCATGATGCAGCGGTGTGTCAT-G  290
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  ATGATAACCAAGGACAGTGTATATGTTCATGATGCAGCGGTGTGTCATGG  298

seq1  GTACATATAT-GGAGCTTGTGGGAATGAATTCTGTCCTTCCAGGGCTTAA  339
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTACATATATGGGAGCTTGTGGGAATGAATTCTGTCCTTCCAGGGCTTAA  348

seq1  CTCAGGACAGCAGGTGTGGTGAAAACTCCTTTTCCTGCTGAGCCATCTCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACAGCAGGTGTGGTGAAAACTCCTTTTCCTGCTGAGCCATCTCA  398

seq1  TTCGCCCCATGTGCTTTTG-TTTTGTTTTATTATTTACAACATATCTCAG  438
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCGCCCCATGTGCTTTTGTTTTTGTTTTATTATTTACAACATATCTCAG  448

seq1  TTTAAAGTAATTATGTTCAGGGGTTCAATGGCAACATGAAGCTATGGGCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTAATTATGTTCAGGGGTTCAATGGCAACATGAAGCTATGGGCA  498

seq1  TGAGATCAGCC-AATTCAGTATTAGACATTTAAAGAAATATTTCAATCAA  537
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAGCCAAATTCAGTATTAGACATTTAAAGAAATATTTCAATCAA  548

seq1  ATCTCTTCCATTCTTCATTAATTATAAAATAAGTATACATAAAGGAAAAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTCCATTCTTCATTAATTATAAAATAAGTATACATAAAGGAAAAG  598

seq1  AGAATAACTACAGATATATGAAAATATACATACATATACATTACACTCTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAACTACAGATATATGAAAATATACATACATATACATTACACTCTG  648

seq1  ATAAAGACCAAACTTAAGAGTTTTTTCAAGCCATTGGTTCTTAGTTATAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACCAAACTTAAGAGTTTTTTCAAGCCATTGGTTCTTAGTTATAA  698

seq1  AGACTCACACTTCAATCAGGGGACCAGGGTATAAGCAATACACTGACTTC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCACACTTCAATCAGGGGACCAGGGTATAAGCAATACACTGACTTC  748

seq1  TGATTTCAAATTTCATAACATAAAGAAATAAAAGCAAAGAAGAGTGGTCC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAAATTTCATAACATAAAGAAATAAAAGCAAAGAAGAGTGGTCC  798

seq1  CCAGAAACTATGAAGTCTCACGGGAGAACATATACTGGTCTCTAAAATAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACTATGAAGTCTCACGGGAGAACATATACTGGTCTCTAAAATAA  848

seq1  CTACTTGTTGACTAAACATTTATGATCCTCACAGACCTTGAAATAAACTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGTTGACTAAACATTTATGATCCTCACAGACCTTGAAATAAACTC  898

seq1  TTGAGAGCCCACATGTTTGTTTTTGTCTCAATCAATATAACTAGTGTGCA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGCCCACATGTTTGTTTTTGTCTCAATCAATATAACTAGTGTGCA  948

seq1  AAACTAAGGTCTGAAAATAGTGAAACAAGAATGCACTACAAACACACTCA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAGGTCTGAAAATAGTGAAACAAGAATGCACTACAAACACACTCA  998

seq1  TTATTGTGTTTGTTTGT----TTGGTTGGTTGGTTGGTTGGTTGGTTGGT  1033
      |||||||||||||||||    |||||||||||||||||||||||||||||
seq2  TTATTGTGTTTGTTTGTTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGT  1048

seq1  TGGTTGGTTGGTTGGTTGGTTTTTGAGTCAGGGTCTCTCTGCATAGCCCT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTGGTTGGTTGGTTTTTGAGTCAGGGTCTCTCTGCATAGCCCT  1098

seq1  GGCTGCCCTGGAATTC  1099
      ||||||||||||||||
seq2  GGCTGCCCTGGAATTC  1114