BAC Information

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BAC

Clone NameB6Ng01-206I10
Chromosome2 (Build37)11 (Build37)
Map Location 181,438,186 - 181,438,88930,969,486 - 30,969,873
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik
Downstream geneOprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206I10.bB6Ng01-206I10.g
ACCGA025919GA025920
length1,026964
definitionB6Ng01-206I10.b B6Ng01-206I10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(181,438,186 - 181,438,889)(30,969,486 - 30,969,873)
sequence
gaattctgggaaatagtgaaaggcacaggaaatttgagctggaatgccga
ggagacagatgtaagccacttgttagctaaactcaggatagaataaaggg
gagattcgccccaggaacaaggagaggaagccagccacatagctgaaccc
aggttagagtaaagaataaatgaagagcaagttagagaaaaagccgaagc
tcatgacctcagcatgggaagaaaaaacatggattttttttttacattca
agtttatcaactttcccacaaattttgtgaatattttgtgtatgggtgtt
ttgcctgcatatgtggaaattatatttcttaaatatggaagagtacttta
gtttatatatgtacaccaatccttcattatgtgttcatctattgatggac
aactagtttgattccaattcattaatatagtgacttttaatatatagaca
aggacatgcaaatatgtctatggtagggtatggagttctctacccagggg
taaaatagctaaggcatatgatagttataattttaattatttgtgaaatc
tggaaactgatttccacaatggctatgttaatttgcccacaccaaaagtc
aataacaattcttttctctccatatcccctccaaccattgttgttagata
agttgaagatagccattctgactggcaggaagaggtaccccaaggtagct
ttatatgcatttcaatgataactaagaatattaaatactttctaaaatag
tatttaaatatttaagtatttaaatagttaccaaacatttgtgtttattt
tttaaactgtccattcaaatcacttgcccatttgttgactgatagttttt
tctttagcatttatgtgttttttgttttagtttttttccactgtcctgaa
actcactctgcagaccagtcctgctttgaactcatacagctctgcctgcc
tctgctgtgattagaggagggtaccgccactgcctagtaattctttataa
tcctgagtatcagccgcctgacttcc
gaattccatgggctggtagagtcttctatatgttgagtctccagctgctc
ttgtactagctgatcaagttaacagccattgctctatccacacaggcttg
tcagtcatccattttaagggtagtagggccttaagacctaaggtaggtat
tttgacagtggtccctcttacagatttgggaactcaattccagctatgtc
ctgtgtttgaacagttgtcacagtctggaggtgtttttgatgacatatat
caacaccttcaccagtcatctcttatctcatcatgagctgtctctgagat
tgcaggaatattaatctgagtacccactgttgtaagatgatcccttcccc
ataaatttatgggtatgccagccacataaggctttaactttcatttttga
cctggtcccacaccttaaacccattgcacacttcattttatctgagataa
ttttctaattcctagaaactgggcataaacctttgaagtggccattctga
attccacgatttttgtaaaatgatatattgactcctacatccacctaacc
ttctctttcttttcttttctcttttctcttctttccttttctttcctttt
cttttctcttctttccttttcttttcttttcttttcttttcttttctttt
cttttcttttcttttcgagacagggtttctttgtgtagccctggctgtcc
tggaactcactctgtagaccaggctggcctcgaactcagaaatccatctg
cctctgcctcccaagtgctgggattaaagacgtgcaccaccagggcccag
caccttctttttcaataccatttaattgcaatttaaattttggtctctga
tcattaatgactacttgccagaacacacattttccagtacttccaaacta
tcatgctctttctttttttatttttaagatttatttatttatttttacat
atgagtacactgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181438186_181438889
seq2: B6Ng01-206I10.b_44_747 (reverse)

seq1  ATAAAGCTACCTTGGGGTACCTCTTCCTGCCAGTCAGAATGGCTATCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTACCTTGGGGTACCTCTTCCTGCCAGTCAGAATGGCTATCTTC  50

seq1  AACTTATCTAACAACAATGGTTGGAGGGGATATGGAGAGAAAAGAATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATCTAACAACAATGGTTGGAGGGGATATGGAGAGAAAAGAATTGT  100

seq1  TATTGACTTTTGGTGTGGGCAAATTAACATAGCCATTGTGGAAATCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTTTTGGTGTGGGCAAATTAACATAGCCATTGTGGAAATCAGTT  150

seq1  TCCAGATTTCACAAATAATTAAAATTATAACTATCATATGCCTTAGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTTCACAAATAATTAAAATTATAACTATCATATGCCTTAGCTAT  200

seq1  TTTACCCCTGGGTAGAGAACTCCATACCCTACCATAGACATATTTGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCCTGGGTAGAGAACTCCATACCCTACCATAGACATATTTGCATG  250

seq1  TCCTTGTCTATATATTAAAAGTCACTATATTAATGAATTGGAATCAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCTATATATTAAAAGTCACTATATTAATGAATTGGAATCAAACT  300

seq1  AGTTGTCCATCAATAGATGAACACATAATGAAGGATTGGTGTACATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCCATCAATAGATGAACACATAATGAAGGATTGGTGTACATATAT  350

seq1  AAACTAAAGTACTCTTCCATATTTAAGAAATATAATTTCCACATATGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAGTACTCTTCCATATTTAAGAAATATAATTTCCACATATGCAG  400

seq1  GCAAAACACCCATACACAAAATATTCACAAAATTTGTGGGAAAGTTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACACCCATACACAAAATATTCACAAAATTTGTGGGAAAGTTGATA  450

seq1  AACTTGAATGTAAAAAAAAAATCCATGTTTTTTCTTCCCATGCTGAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAATGTAAAAAAAAAATCCATGTTTTTTCTTCCCATGCTGAGGTC  500

seq1  ATGAGCTTCGGCTTTTTCTCTAACTTGCTCTTCATTTATTCTTTACTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTCGGCTTTTTCTCTAACTTGCTCTTCATTTATTCTTTACTCTA  550

seq1  ACCTGGGTTCAGCTATGTGGCTGGCTTCCTCTCCTTGTTCCTGGGGCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTTCAGCTATGTGGCTGGCTTCCTCTCCTTGTTCCTGGGGCGAA  600

seq1  TCTCCCCTTTATTCTATCCTGAGTTTAGCTAACAAGTGGCTTACATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTTTATTCTATCCTGAGTTTAGCTAACAAGTGGCTTACATCTGT  650

seq1  CTCCTCGGCATTCCAGCTCAAATTTCCTGTGCCTTTCACTATTTCCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCGGCATTCCAGCTCAAATTTCCTGTGCCTTTCACTATTTCCCAGA  700

seq1  ATTC  704
      ||||
seq2  ATTC  704

seq1: chr11_30969486_30969873
seq2: B6Ng01-206I10.g_744_844 (reverse)

seq1  CTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGA  50
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGATGGATTTCTGAGTTCGA  50

seq1  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGA  100
      ||||||||||||||||| |||||||||||||||||||||||||| ||| |
seq2  GGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAAA  100

seq1  GAAACCCTGTCTTAAAAAAACAAAAAACAACAACAACAGAAAGTTTGTCC  150
      |                                                 
seq2  G-------------------------------------------------  101

seq1  AAAGCTAAGATTCCAAAGGAAATAAATCCCTGGCCAAAGTTAATCATGGC  200
                                                        
seq2  --------------------------------------------------  101

seq1  ATAGAAAAACTGTAATTTAACATATAGTTGTCCAGTTTCATTGTTAAATC  250
                                                        
seq2  --------------------------------------------------  101

seq1  ACCACCATAATAAGTAAACAAAGCAGGACATGTTGAGTTGGTTTTGGGTC  300
                                                        
seq2  --------------------------------------------------  101

seq1  TTCTCTCTGCAGGTCCTGCTCTTCTTTGTGGGCTAGGATGCAGTTCTGGG  350
                                                        
seq2  --------------------------------------------------  101

seq1  AATCACAGTGACTGACACAGTAGTCAGTTATCACAAAG  388
                                            
seq2  --------------------------------------  101