BAC Information

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BAC

Clone NameB6Ng01-207A20
Chromosome11 (Build37)
Map Location 111,571,427 - 111,732,563
singlet/doubletdoublet
Overlap geneLOC629967
Upstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966
Downstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207A20.bB6Ng01-207A20.g
ACCGA026305GA026306
length1,146919
definitionB6Ng01-207A20.b B6Ng01-207A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,731,440 - 111,732,563)(111,571,427 - 111,572,336)
sequence
gaattcacacataaggtcaccatattatccaaaacacaatcacatagatt
aaagcaaagagataaaaattagacttggcagcatcacgataaataagact
gtggtaaagaaccggcttcctttctttggctgaagataagaacatgggca
taagccacaattataacacatttgtggatctaatttagcattccagaaat
ggtgactatttcatgaatattaagaaaatatgtactttgtgccagatgat
ctggtggtatttttaataaggatatggacgatctagtctggtgataacct
gaattcagtacccaggagccacacaatagaaagagagatgcaactcctgt
aagctgtcacatttctcctacgtagctctttggcacacactccactcttc
acatgtaataagtctttaaaattgcagtttgggacttggagaaattcata
tgaaagtgggaaaagcaaatgacccattagtggttacaatttggagttag
ggaaaatcaaaatataaaatataaaaagaaaagcattttgtaaatgtcag
ctgatttatatctccatagtaaggtacttacatagcatgcaatccacagc
aggtcccagcaagctcaaacccccagtattatataaacaaataaataaaa
aaaaatcacaaaaggaaagttagccaaaggataccaaaatagctctttgg
aagagatacttccacatttgaactcaaacccttgtaaaagtgaattggat
agaaaatctggaagaaggttccagaaagaagcaatgctaatacaatacac
agacagaggtgattcctgaaaacctgtgcgtggtacatgcagtacatttt
attcatttgaatagctagaatactttgattgcttacagtttaggagaatt
caggtggcgtcgtgtgtgttgaacagatgtcaaatgctagacagatgtac
atttttgccagtgctgactttattgttttctaggaacacaaaagaattgc
agcttggaaaaataatggggactccagttagttcaatgcaatggatagca
atgaagccaattttttattttaggacttatgtgttatgagtggtgggcaa
ctcaaggcaataatgtgacattatgaagttccgggcgacaactttt

gaattcctttgatttgtttatctcatttgtgttcagaaacacttaattcc
cttgaatttcgaatgtgtgaagtgtttcccataaaggctccaagaatgct
gggataccatgagggggcatattaaaaatatcttacacatagttggtgta
tcattctttatagttgtcctgtggctctctattacattagaaactattat
cttctattcatattcctgcctcttacatacctgtaaatagaatcacctgg
tctatttagcaagcttggttctgtaactcttcatcaatagttttatccct
ttattctctgtctgattcctttgggacaaaaaaaaaatgaacattggttc
tatgacttgtaaattaaagaactgcatctttgcagagcacagatctttaa
ggtattgggagtgactgattcaattttctgttgtccccccctttttttac
ctagctgaatttattcactattaaaaatcatatactatttagccaccatg
attacaggagatatttgatactattctttgcttgtcagtttgcacaagta
ccttggagtctatgtgagagctcaggggtcaaggcttccaagcctgataa
gctgatgtcatgcctcagaattcacatagagagaggagggaataagagga
tggagttttcctctcctttcacacaatcaccaaatcacaagttcagacta
ctgaatacacaagcaaactaatgcaaaaaaaactgagacgtcgtcattcc
cctttataagatgacttatgtggtacgttttattatcattatgactttca
tgagtttaacatgctggggattattgttattaaaatatttatttccttac
ccaaactcatagtggtttcaacatctagtggtagaagtcctttcagtttt
tgctttctgaagccctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111731440_111732563
seq2: B6Ng01-207A20.b_47_1192 (reverse)

seq1  AAAAGTTGTCG-CCGGACCTCTAT-ATG-CACATTATACCTGTGTG-TAC  46
      ||||||||||| ||||| ||  || ||| ||||||||  |  || | | |
seq2  AAAAGTTGTCGCCCGGAACTTCATAATGTCACATTATTGCCTTGAGTTGC  50

seq1  CCA-CACTCAT-ACACAAAAGTC--TAAATAAAAAATTGGC-TCA-TGCT  90
      ||| ||||||| ||||| |||||   ||||||||||||||| ||| ||||
seq2  CCACCACTCATAACACATAAGTCCTAAAATAAAAAATTGGCTTCATTGCT  100

seq1  A-CCATTGCA-TGAACT-ACTGGAGT-CCCATTA-TTTTCCCAGCTGCAA  135
      | |||||||| |||||| |||||||| ||||||| |||||| ||||||||
seq2  ATCCATTGCATTGAACTAACTGGAGTCCCCATTATTTTTCCAAGCTGCAA  150

seq1  TTCTTTTGTG-TCCTAG-AAACAATAAAGTCAGCACTGGC-AAAATGTAC  182
      |||||||||| |||||| |||||||||||||||||||||| |||||||||
seq2  TTCTTTTGTGTTCCTAGAAAACAATAAAGTCAGCACTGGCAAAAATGTAC  200

seq1  ATCTGTCTAGCATTTGACATCTG-TCAACACACACGACGCCACCTG-ATT  230
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  ATCTGTCTAGCATTTGACATCTGTTCAACACACACGACGCCACCTGAATT  250

seq1  CTCCTAAACTGTAAGCAATC-AAGTATTCTAGCTATTCAAATGAATAAAA  279
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCCTAAACTGTAAGCAATCAAAGTATTCTAGCTATTCAAATGAATAAAA  300

seq1  TGTACTGCATGTACCACGCACAGG-TTTCAGGAATCACCTCTGTCTGTGT  328
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTACTGCATGTACCACGCACAGGTTTTCAGGAATCACCTCTGTCTGTGT  350

seq1  ATTGTATTAGCATTGCTTCTTTCTGGAACCTTCTTCCAGATTTTCTATCC  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTAGCATTGCTTCTTTCTGGAACCTTCTTCCAGATTTTCTATCC  400

seq1  AATTCACTTTTACAAGGGTTTGAGTTCAAATGTGGAAGTATCTCTTCCAA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTTTTACAAGGGTTTGAGTTCAAATGTGGAAGTATCTCTTCCAA  450

seq1  AGAGCTATTTTGGTATCCTTTGGCTAACTTTCCTTTTGTGATTTTTTTTT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATTTTGGTATCCTTTGGCTAACTTTCCTTTTGTGATTTTTTTTT  500

seq1  ATTTATTTGTTTATATAATACTGGGGGTTTGAGCTTGCTGGGACCTGCTG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGTTTATATAATACTGGGGGTTTGAGCTTGCTGGGACCTGCTG  550

seq1  TGGATTGCATGCTATGTAAGTACCTTACTATGGAGATATAAATCAGCTGA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCATGCTATGTAAGTACCTTACTATGGAGATATAAATCAGCTGA  600

seq1  CATTTACAAAATGCTTTTCTTTTTATATTTTATATTTTGATTTTCCCTAA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAAAATGCTTTTCTTTTTATATTTTATATTTTGATTTTCCCTAA  650

seq1  CTCCAAATTGTAACCACTAATGGGTCATTTGCTTTTCCCACTTTCATATG  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATTGTAACCACTAATGGGTCATTTGCTTTTCCCACTTTCATATG  700

seq1  AATTTCTCCAAGTCCCAAACTGCAATTTTAAAGACTTATTACATGTGAAG  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCCAAGTCCCAAACTGCAATTTTAAAGACTTATTACATGTGAAG  750

seq1  AGTGGAGTGTGTGCCAAAGAGCTACGTAGGAGAAATGTGACAGCTTACAG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTGTGTGCCAAAGAGCTACGTAGGAGAAATGTGACAGCTTACAG  800

seq1  GAGTTGCATCTCTCTTTCTATTGTGTGGCTCCTGGGTACTGAATTCAGGT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCATCTCTCTTTCTATTGTGTGGCTCCTGGGTACTGAATTCAGGT  850

seq1  TATCACCAGACTAGATCGTCCATATCCTTATTAAAAATACCACCAGATCA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCAGACTAGATCGTCCATATCCTTATTAAAAATACCACCAGATCA  900

seq1  TCTGGCACAAAGTACATATTTTCTTAATATTCATGAAATAGTCACCATTT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCACAAAGTACATATTTTCTTAATATTCATGAAATAGTCACCATTT  950

seq1  CTGGAATGCTAAATTAGATCCACAAATGTGTTATAATTGTGGCTTATGCC  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGCTAAATTAGATCCACAAATGTGTTATAATTGTGGCTTATGCC  1000

seq1  CATGTTCTTATCTTCAGCCAAAGAAAGGAAGCCGGTTCTTTACCACAGTC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTTATCTTCAGCCAAAGAAAGGAAGCCGGTTCTTTACCACAGTC  1050

seq1  TTATTTATCGTGATGCTGCCAAGTCTAATTTTTATCTCTTTGCTTTAATC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATCGTGATGCTGCCAAGTCTAATTTTTATCTCTTTGCTTTAATC  1100

seq1  TATGTGATTGTGTTTTGGATAATATGGTGACCTTATGTGTGAATTC  1124
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATTGTGTTTTGGATAATATGGTGACCTTATGTGTGAATTC  1146


seq1: chr11_111571427_111572336
seq2: B6Ng01-207A20.g_70_988

seq1  GAATTCCTTTGATTTGTTTATCTCATTTGTGTTCAGAAACACTTAATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGATTTGTTTATCTCATTTGTGTTCAGAAACACTTAATTCC  50

seq1  CTTGAATTTCGAATGTGTGAAGTGTTTCCCATAAAGGCTCCAAGAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTTCGAATGTGTGAAGTGTTTCCCATAAAGGCTCCAAGAATGCT  100

seq1  GGGATACCATGAGGGGGCATATTAAAAATATCTTACACATAGTTGGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACCATGAGGGGGCATATTAAAAATATCTTACACATAGTTGGTGTA  150

seq1  TCATTCTTTATAGTTGTCCTGTGGCTCTCTATTACATTAGAAACTATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTATAGTTGTCCTGTGGCTCTCTATTACATTAGAAACTATTAT  200

seq1  CTTCTATTCATATTCCTGCCTCTTACATACCTGTAAATAGAATCACCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTCATATTCCTGCCTCTTACATACCTGTAAATAGAATCACCTGG  250

seq1  TCTATTTAGCAAGCTTGGTTCTGTAACTCTTCATCAATAGTTTTATCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTAGCAAGCTTGGTTCTGTAACTCTTCATCAATAGTTTTATCCCT  300

seq1  TTATTCTCTGTCTGATTCCTTTGGGACAAAAAAAAAATGAACATTGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCTGTCTGATTCCTTTGGGACAAAAAAAAAATGAACATTGGTTC  350

seq1  TATGACTTGTAAATTAAAGAACTGCATCTTTGCAGAGCACAGATCTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTGTAAATTAAAGAACTGCATCTTTGCAGAGCACAGATCTTTAA  400

seq1  GGTATTGGGAGTGACTGATTCAATTTTCTGTTGTCCCCCCCTTTTTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGGGAGTGACTGATTCAATTTTCTGTTGTCCCCCCCTTTTTTTAC  450

seq1  CTAGCTGAATTTATTCACTATTAAAAATCATATACTATTTAGCCACCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGAATTTATTCACTATTAAAAATCATATACTATTTAGCCACCATG  500

seq1  ATTACAGGAGATATTTGATACTATTCTTTGCTTGTCAGTTTGCACAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGAGATATTTGATACTATTCTTTGCTTGTCAGTTTGCACAAGTA  550

seq1  CCTTGGAGTCTATGTGAGAGCTCAGGGGTCAAGGCTTCCAAGCCTGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGTCTATGTGAGAGCTCAGGGGTCAAGGCTTCCAAGCCTGATAA  600

seq1  GCTGATGTCATGCCTCAGAATTCACATAGAGAGAGGAGGGAATAAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTCATGCCTCAGAATTCACATAGAGAGAGGAGGGAATAAGAGGA  650

seq1  TGGAGTTTTCCTCTCC-TTCACACAATCACCAAATCACAAGTTCAGACTA  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGAGTTTTCCTCTCCTTTCACACAATCACCAAATCACAAGTTCAGACTA  700

seq1  CTGAATACACAAGCAAACTAATGC-AAAAAAACTGAGACGTCGTCATTCC  748
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGAATACACAAGCAAACTAATGCAAAAAAAACTGAGACGTCGTCATTCC  750

seq1  CCTTTATAAGATGACTTATGTGGTACGTTTTATTATCATTATGAC-TTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTTTATAAGATGACTTATGTGGTACGTTTTATTATCATTATGACTTTCA  800

seq1  TGAGTTTAACATGCT-GGGATTATTGTTATTAAAATATTTATTTCCTTAC  846
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGTTTAACATGCTGGGGATTATTGTTATTAAAATATTTATTTCCTTAC  850

seq1  CCAAACTCATAGT-GTTTCAACATCTAGTGGTAGAAGTCC-TTCAG-TTT  893
      ||||||||||||| |||||||||||||||||||||||||| ||||| |||
seq2  CCAAACTCATAGTGGTTTCAACATCTAGTGGTAGAAGTCCTTTCAGTTTT  900

seq1  TGC-TTCTG-AGTCCTTTT  910
      ||| ||||| || ||||||
seq2  TGCTTTCTGAAGCCCTTTT  919


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