BAC Information

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BAC

Clone NameB6Ng01-208O07
Chromosome11 (Build37)
Map Location 4,394,845 - 4,499,752
singlet/doubletdoublet
Overlap geneMtmr3, LOC100041006
Upstream genePla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2
Downstream geneOTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208O07.bB6Ng01-208O07.g
ACCGA027652GA027653
length925986
definitionB6Ng01-208O07.b B6Ng01-208O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,394,845 - 4,395,661)(4,498,853 - 4,499,752)
sequence
gaattcattgtttgcattcaaaataaagttttgctttttaatagtttctc
tctctctctctctctctctctctctctctctctctctctctgtgtgtgtg
tgtgtgtgtgtgtgttctacacaagaacaacaaagtgttgcactgagcca
tctttctggccctaaaattgagtttttaaagaaagaaattaagtatctgt
gaggtatgagagactacacagtactgatccggtctttttatgacaagtct
ctggcccagagctaagtgacagatgcaaatggaaaatccttaagagaaga
agacagttctcctttggtcagtgtggtgatctgaatgagaatggcccaac
aggcacatacatttaaatgctaagtcaccagggagtgacactatttgaaa
ggattaaaaggattagaaagtgtggtcttgctgggggacactgatttgaa
atgccagggtaggctttgaggtttcaagtccaaaagtgctaagtcaggaa
tctctctctgcccgcagaccatgacatagctttcaactgctgcgccagtg
tttgcctgcctgtgtgccactgtgctccctggcatgatgctaatgaacta
acctctgagactgtaagccagccccaagtaaatattttctttcaactgga
tatagtggcgcaggccttttaatctaaacactctggaggcagtagacaga
cctctgtgagttagaggccagctttatttatgaagcgagtccaggagaaa
ccccgtcttgaaaaaacaatggaacacaccttcactctcggcactcagag
gcagaggaatgtggatctctgtgagttcaaggccagcttaatctggagtg
agttccaggtcagccaaggatacaatgtaagacctatatagaaaagagta
gagagagcgaacgcttttatcccag
gaattccttgaatactttgtatttttcctaggtacgtggtttgcaaatat
agtcttgtattctctaaattgtctgttcactattactctttgctatctat
actgaagctttttggtttgatgtaatctcttttgctaattttggttatgc
tttgtgggccataattaaaaaaaaaaaaccaggctgggcatggtgacaca
tacctttaatcccagtacttgggagatagaggcaggtggatctctgtttt
ttcttgtccagcctgatctatatagtgtgttcctgaacagtcagggatct
gtatagagatcctgtctcaaaataaaataaattcattgcttagagtaatg
ttacagaggttttgtttctttggtagtgtttgttgttgctggttattcga
gtttacatttatttctttgtttactttttatttattttattttatttttg
gttttttttcgagacagggtttctctgtgtagctctggctgtcctggaac
tcactttgtagaccaggctggcctcgaactcagaaatctgccttcctctg
cctcccaagtgctgggattaaaggtgtgcgccaccaccgcccggctttgt
ttactttttattattcgaaacatttatacttgtatgcaatagaataaggt
cattatctaccccaatttcccccttcagtttctcctgaataccactatac
atccttctcccaatgccaatgtttttttttcttaaaaaaaaaaaagagaa
tgtatttttgcttatgtgtttgtgtgcacctgcttgtttgtctgtgaaac
cttcgctgttatactcgcatctgcttttggtgtgtggcaatctgctctgg
tgaaagtactcaagaccaatcttgtctcgtacaaataagatatttgtggg
ttttttttttcctcaatgtactaagacttgccagagtctaaagtttctgg
ctgggatattttgaccaattgaacttctagcattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4394845_4395661
seq2: B6Ng01-208O07.b_45_861

seq1  GAATTCATTGTTTGCATTCAAAATAAAGTTTTGCTTTTTAATAGTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTGCATTCAAAATAAAGTTTTGCTTTTTAATAGTTTCTC  50

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTG  100

seq1  TGTGTGTGTGTGTGTTCTACACAAGAACAACAAAGTGTTGCACTGAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTTCTACACAAGAACAACAAAGTGTTGCACTGAGCCA  150

seq1  TCTTTCTGGCCCTAAAATTGAGTTTTTAAAGAAAGAAATTAAGTATCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGCCCTAAAATTGAGTTTTTAAAGAAAGAAATTAAGTATCTGT  200

seq1  GAGGTATGAGAGACTACACAGTACTGATCCGGTCTTTTTATGACAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATGAGAGACTACACAGTACTGATCCGGTCTTTTTATGACAAGTCT  250

seq1  CTGGCCCAGAGCTAAGTGACAGATGCAAATGGAAAATCCTTAAGAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAGAGCTAAGTGACAGATGCAAATGGAAAATCCTTAAGAGAAGA  300

seq1  AGACAGTTCTCCTTTGGTCAGTGTGGTGATCTGAATGAGAATGGCCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTCTCCTTTGGTCAGTGTGGTGATCTGAATGAGAATGGCCCAAC  350

seq1  AGGCACATACATTTAAATGCTAAGTCACCAGGGAGTGACACTATTTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATACATTTAAATGCTAAGTCACCAGGGAGTGACACTATTTGAAA  400

seq1  GGATTAAAAGGATTAGAAAGTGTGGTCTTGCTGGGGGACACTGATTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAAGGATTAGAAAGTGTGGTCTTGCTGGGGGACACTGATTTGAA  450

seq1  ATGCCAGGGTAGGCTTTGAGGTTTCAAGTCCAAAAGTGCTAAGTCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGGTAGGCTTTGAGGTTTCAAGTCCAAAAGTGCTAAGTCAGGAA  500

seq1  TCTCTCTCTGCCCGCAGACCATGACATAGCTTTCAACTGCTGCGCCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGCCCGCAGACCATGACATAGCTTTCAACTGCTGCGCCAGTG  550

seq1  TTTGCCTGCCTGTGTGCCACTGTGCTCCCTGGCATGATGCTAATGAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGCCTGTGTGCCACTGTGCTCCCTGGCATGATGCTAATGAACTA  600

seq1  ACCTCTGAGACTGTAAGCCAGCCCCAAGTAAATATTTTCTTTCAACTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGACTGTAAGCCAGCCCCAAGTAAATATTTTCTTTCAACTGGA  650

seq1  TATAGTGGCGCAGGCC-TTTAATCTAAACACTCTGGAGGCAGTAGACAGA  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATAGTGGCGCAGGCCTTTTAATCTAAACACTCTGGAGGCAGTAGACAGA  700

seq1  CCTCTGTGAGTTAGAGGCCAGCTTTATTTATGAAGCGAGTCCAGGAGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTCTGTGAGTTAGAGGCCAGCTTTATTTATGAAGCGAGTCCAGGAGAAA  750

seq1  CCCCGTCTTGAAAAAACAATGGAACACACCTTCACTCTCGGCACTCAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCCGTCTTGAAAAAACAATGGAACACACCTTCACTCTCGGCACTCA-GA  799

seq1  GGCAGAGGAAGGTGGATC  817
      |||||||||| |||||||
seq2  GGCAGAGGAATGTGGATC  817

seq1: chr11_4498853_4499752
seq2: B6Ng01-208O07.g_62_962 (reverse)

seq1  ACCCACAAATATCTTATTTGTACGAGACAAGATT-GTCTTGAGTACTTTC  49
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCCACAAATATCTTATTTGTACGAGACAAGATTGGTCTTGAGTACTTTC  50

seq1  ACCAGAGCAGATTGCCACACACCAAAAGCAGATGCGAGTATAACAGCGAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCAGATTGCCACACACCAAAAGCAGATGCGAGTATAACAGCGAA  100

seq1  GGTTTCACAGACAAACAAGCAGGTGCACACAAACACATAAGCAAAAATAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACAGACAAACAAGCAGGTGCACACAAACACATAAGCAAAAATAC  150

seq1  ATTCTCTTTTTTTTTTTTAAGAAAAAAAAACATTGGCATTGGGAGAAGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTTTTTTTTTTAAGAAAAAAAAACATTGGCATTGGGAGAAGGA  200

seq1  TGTATAGTGGTATTCAGGAGAAACTGAAGGGGGAAATTGGGGTAGATAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTGGTATTCAGGAGAAACTGAAGGGGGAAATTGGGGTAGATAAT  250

seq1  GACCTTATTCTATTGCATACAAGTATAAATGTTTCGAATAATAAAAAGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTATTCTATTGCATACAAGTATAAATGTTTCGAATAATAAAAAGTA  300

seq1  AACAAAGCCGGGCGGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCCGGGCGGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAG  350

seq1  GCAGAGGAAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTG  400

seq1  AGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCGAAAAAAAA  450

seq1  CCAAAAATAAAATAAAATAAATAAAAAGTAAACAAAGAAATAAATGTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATAAAATAAAATAAATAAAAAGTAAACAAAGAAATAAATGTAAA  500

seq1  CTCGAATAACCAGCAACAACAAACACTACCAAAGAAACAAAACCTCTGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAATAACCAGCAACAACAAACACTACCAAAGAAACAAAACCTCTGTA  550

seq1  ACATTACTCTAAGCAATGAATTTATTTTATTTTGAGACAGGATCTCTATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTCTAAGCAATGAATTTATTTTATTTTGAGACAGGATCTCTATA  600

seq1  CAGATCCCTGACTGTTCAGGAACACACTATATAGATCAGGCTGGACAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCTGACTGTTCAGGAACACACTATATAGATCAGGCTGGACAAGA  650

seq1  AAAAACAGAGATCCACCTGCCTCTATCTCCCAAGTACTGGGATTAAAGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGAGATCCACCTGCCTCTATCTCCCAAGTACTGGGATTAAAGGT  700

seq1  ATGTGTCACCATGCCCAGCCTGGTTTTTTTTTTTTAATTATGGCCCACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCACCATGCCCAGCCTGGTTTTTTTTTTTTAATTATGGCCCACAA  750

seq1  AGCATAACCAAAATTAGCAAAAGAGATTACATCAAACCAAAAAGCTTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACCAAAATTAGCAAAAGAGATTACATCAAACCAAAAAGCTTCAG  800

seq1  TATAGATAGCAAAGAGTAATAGTGAACAGACAATTTAGAGAATACAAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATAGCAAAGAGTAATAGTGAACAGACAATTTAGAGAATACAAGAC  850

seq1  TATATTTGCAAACCACGTACCTAGGAAAAATACAAAGTATTCAAGGAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGCAAACCACGTACCTAGGAAAAATACAAAGTATTCAAGGAATT  900

seq1  C  900
      |
seq2  C  901