BAC Information

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BAC

Clone NameB6Ng01-210F01
Chromosome11 (Build37)
Map Location 90,164,115 - 90,318,089
singlet/doubletdoublet
Overlap geneHlf
Upstream geneLOC100039047, 4932411E22Rik, Ankfn1, Pctp, Tmem100, LOC100039104, Mmd
Downstream geneStxbp4, LOC100039267, Cox11, Tom1l1, LOC638903, EG664976
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210F01.bB6Ng01-210F01.g
ACCGA028686GA028687
length1,121412
definitionB6Ng01-210F01.b B6Ng01-210F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,316,977 - 90,318,089)(90,164,115 - 90,164,532)
sequence
gaattcattagggatttgggtggaactcagaacatgtgagttaaccacca
aatacgttcaccaccttggcatgttgaaagacagcagtgcaggaagtctc
cctggctttcacccctcccttcttggaatcagtcttaaaacatagaaagg
atgtggacaaccttccccagtgaagggaagtacccttcttcactcatgag
ggaagtacccttcttcactcagagggaagcatcatcattgttttatgaaa
ccaaaggaatgaaaggatacagaggagaactggaataaactggtctgacg
acgttttccccaatttgtcaccattagatcacatctttcttcttttatat
ttcaccccaaatgatccgctcttcaccaaatctattgtgaaagacactca
gatgcatcttcctggggtcttcgtttccttatgaaggctcctggcgcaca
taaagcttattaagcatatttatttatatagataaatccttcatttacct
agtcatgccttgtattgcaagcacccacctacacatcccgtactccaggc
tactccagattaaattcagtttacagagcgtgccattgagaattctcata
gcattgtaactatcataactgtgcttaaaagccccttttttctctgtgtg
tgtctgcctctgtctctgtctctgtctatgtctctgtctctctctctctc
tctctctcactctgtctcttcccatgtctgtctctgtctatctctctgtg
tgtctgtctttctgtgtctctctttgtgtgtgtgcatggacttgctcgtg
aatgacatgaacataccacacgagtggaagtcagaagacaacttggagtt
ggttctccctgactgccgtgtgggtcccaagggtttgaattcagatcatt
tggcttggagcaagaaactcatgtgacatgctgccagccctcatagatag
aattttttatgatattgttcagactatttgtgtagctattctttcccaca
ctagactgtaagctccttaaaaatgcatactttcttagcatctgtcacag
ttctagcacatatgaaaggacctccagtacctgtgatgaatgggataaag
gattgggtgtggaatgggtgg

ctaatgcttaatacttcccctggagaaatcatgctggtttctgccttgat
ttctagtctaattcacaaagactgctgaaggcatgctgttcttggaaact
tcccaagggccaaaagcctgtctaattcatcctaaaaatttagcttcata
gagataggactcaagcgccacacaactcctccaccacaatgtaactccaa
ggcatttgtttcccccaaaacaaatcccatgtcctttagcaaccattgct
ccagcctataccactttcccctaggcaaccactaacctttttccagtctc
tatagagttacctattctgaacattttctgtaataaatttgtgcactttg
taacatcttatgaatggattcctttcatttaacatctttttatattttgt
gtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_90316977_90318089
seq2: B6Ng01-210F01.b_47_1167 (reverse)

seq1  CCACCCA-TCCA---CCCATCCTTTAT-CCATTCATTCACCAAGTACTG-  44
      ||||||| ||||   || ||||||||| ||||||| ||| || |||||| 
seq2  CCACCCATTCCACACCCAATCCTTTATCCCATTCA-TCA-CAGGTACTGG  48

seq1  -AGTCC-TTCCTATGTGCTAGAACTGGTGACAGATGCTAAGAAGGTATGC  92
        |||| ||| |||||||||||||| ||||||||||||||||| ||||||
seq2  AGGTCCTTTCATATGTGCTAGAACT-GTGACAGATGCTAAGAAAGTATGC  97

seq1  ATTTTTAAGGAGCTTACAGTCTAGTTGTGGGAA--GATAGCTACACAAAT  140
      |||||||||||||||||||||||| ||||||||   ||||||||||||||
seq2  ATTTTTAAGGAGCTTACAGTCTAG-TGTGGGAAAGAATAGCTACACAAAT  146

seq1  AGTCCTGAC-ATATCAT-AAAAATTCTATCTATGAGGGCTGGCAGCATGT  188
      ||||   || ||||||| ||||||||||||||||||||||||||||||||
seq2  AGTCTGAACAATATCATAAAAAATTCTATCTATGAGGGCTGGCAGCATGT  196

seq1  CACATGAGTTTCTTGCTCCCAAGCCAAATGATCTGAATTCAAA-CCTTGG  237
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  CACATGAGTTTCTTGCT-CCAAGCCAAATGATCTGAATTCAAACCCTTGG  245

seq1  GACCCACACGGCAGTCAGGGAGAACCAACTCCAAGTTGTCTTCTGACTTC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACACGGCAGTCAGGGAGAACCAACTCCAAGTTGTCTTCTGACTTC  295

seq1  CACTCGTGTGGTATGTTCATGTCATTCACGAGCAAGTCCATGCACACACA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGTGTGGTATGTTCATGTCATTCACGAGCAAGTCCATGCACACACA  345

seq1  CAAAGAGAGACACAGAAAGACAGACACACAGAGAGATAGACAGAGACAGA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAGACACAGAAAGACAGACACACAGAGAGATAGACAGAGACAGA  395

seq1  CATGGGAAGAGACAGAGTGAGAGAGAGAGAGAGAGAGAGACAGAGACATA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAAGAGACAGAGTGAGAGAGAGAGAGAGAGAGAGACAGAGACATA  445

seq1  GACAGAGACAGAGACAGAGGCAGACACACACAGAGAAAAAAGGGGCTTTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACAGAGACAGAGGCAGACACACACAGAGAAAAAAGGGGCTTTT  495

seq1  AAGCACAGTTATGATAGTTACAATGCTATGAGAATTCTCAATGGCACGCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGTTATGATAGTTACAATGCTATGAGAATTCTCAATGGCACGCT  545

seq1  CTGTAAACTGAATTTAATCTGGAGTAGCCTGGAGTACGGGATGTGTAGGT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACTGAATTTAATCTGGAGTAGCCTGGAGTACGGGATGTGTAGGT  595

seq1  GGGTGCTTGCAATACAAGGCATGACTAGGTAAATGAAGGATTTATCTATA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTGCAATACAAGGCATGACTAGGTAAATGAAGGATTTATCTATA  645

seq1  TAAATAAATATGCTTAATAAGCTTTATGTGCGCCAGGAGCCTTCATAAGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATATGCTTAATAAGCTTTATGTGCGCCAGGAGCCTTCATAAGG  695

seq1  AAACGAAGACCCCAGGAAGATGCATCTGAGTGTCTTTCACAATAGATTTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAAGACCCCAGGAAGATGCATCTGAGTGTCTTTCACAATAGATTTG  745

seq1  GTGAAGAGCGGATCATTTGGGGTGAAATATAAAAGAAGAAAGATGTGATC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGCGGATCATTTGGGGTGAAATATAAAAGAAGAAAGATGTGATC  795

seq1  TAATGGTGACAAATTGGGGAAAACGTCGTCAGACCAGTTTATTCCAGTTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGACAAATTGGGGAAAACGTCGTCAGACCAGTTTATTCCAGTTC  845

seq1  TCCTCTGTATCCTTTCATTCCTTTGGTTTCATAAAACAATGATGATGCTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTATCCTTTCATTCCTTTGGTTTCATAAAACAATGATGATGCTT  895

seq1  CCCTCTGAGTGAAGAAGGGTACTTCCCTCATGAGTGAAGAAGGGTACTTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGAGTGAAGAAGGGTACTTCCCTCATGAGTGAAGAAGGGTACTTC  945

seq1  CCTTCACTGGGGAAGGTTGTCCACATCCTTTCTATGTTTTAAGACTGATT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTGGGGAAGGTTGTCCACATCCTTTCTATGTTTTAAGACTGATT  995

seq1  CCAAGAAGGGAGGGGTGAAAGCCAGGGAGACTTCCTGCACTGCTGTCTTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGGGAGGGGTGAAAGCCAGGGAGACTTCCTGCACTGCTGTCTTT  1045

seq1  CAACATGCCAAGGTGGTGAACGTATTTGGTGGTTAACTCACATGTTCTGA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCCAAGGTGGTGAACGTATTTGGTGGTTAACTCACATGTTCTGA  1095

seq1  GTTCCACCCAAATCCCTAATGAATTC  1113
      ||||||||||||||||||||||||||
seq2  GTTCCACCCAAATCCCTAATGAATTC  1121


seq1: chr11_90164115_90164532
seq2: B6Ng01-210F01.g_66_483

seq1  GAATTCCTAATGCTTAATACTTCCCCTGGAGAAATCATGCTGGTTTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATGCTTAATACTTCCCCTGGAGAAATCATGCTGGTTTCTGC  50

seq1  CTTGATTTCTAGTCTAATTCACAAAGACTGCTGAAGGCATGCTGTTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTCTAGTCTAATTCACAAAGACTGCTGAAGGCATGCTGTTCTTG  100

seq1  GAAACTTCCCAAGGGCCAAAAGCCTGTCTAATTCATCCTAAAAATTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCCCAAGGGCCAAAAGCCTGTCTAATTCATCCTAAAAATTTAGC  150

seq1  TTCATAGAGATAGGACTCAAGCGCCACACAACTCCTCCACCACAATGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAGATAGGACTCAAGCGCCACACAACTCCTCCACCACAATGTAA  200

seq1  CTCCAAGGCATTTGTTTCCCCCAAAACAAATCCCATGTCCTTTAGCAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGCATTTGTTTCCCCCAAAACAAATCCCATGTCCTTTAGCAACC  250

seq1  ATTGCTCCAGCCTATACCACTTTCCCCTAGGCAACCACTAACCTTTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCCAGCCTATACCACTTTCCCCTAGGCAACCACTAACCTTTTTCC  300

seq1  AGTCTCTATAGAGTTACCTATTCTGAACATTTTCTGTAATAAATTTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTATAGAGTTACCTATTCTGAACATTTTCTGTAATAAATTTGTGC  350

seq1  ACTTTGTAACATCTTATGAATGGATTCCTTTCATTTAACATCTTTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAACATCTTATGAATGGATTCCTTTCATTTAACATCTTTTTATA  400

seq1  TTTTGTGTGTGTGTGTGT  418
      ||||||||||||||||||
seq2  TTTTGTGTGTGTGTGTGT  418


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