BAC Information

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BAC

Clone NameB6Ng01-210F16
Chromosome11 (Build37)
Map Location 27,910,398 - 27,911,497
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042367, LOC100042377
Downstream geneEG626571, Ccdc85a, Efemp1, LOC382504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210F16.bB6Ng01-210F16.g
ACCGA028713GA028714
length1,113928
definitionB6Ng01-210F16.b B6Ng01-210F16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgagtaactgtgttccctgttttttattttattttattttat
ttttaaaattttatttatatatttatttacactccatattttatccccct
gtcccagtctaccctcagactgttccacatcccatacctcctccacattc
cctcatttttaaatagggatattttgactgagtgtgaggtccctgatgga
ggagtgggagcagggactgaagaagctgaggcggtatgcaaccctatggg
gagagcaacagtgtcaactggccagaacgggactggaccaccaaacaaat
agtatacatgtaggtaaccatggatcaaccacatatgtggcagaggattg
ccttgttggacatcagtaggaggagcagccctcgggcctcagggggttcg
atgccccagtgtaggggaattcctgggccagaaggcaggaatgggcaggt
agaggagcaccctcatagaggcaggggaatgaggaattgattaaggcatt
tctggaggggagacctagagtgggggtaacatttgaaaagtaaataaaga
aaatatcctataaaaggtaaacaacaacaacaaaaaaaagtgtgctttaa
acccttctttgaaacttgcaaacttttggcttctctgtactttccaagga
acacattctaaccttcccacactgttaaattctctgccatctgctgaatt
tttataccaattttatttagctaagcatcatgcctacatttcaaaaagcc
atcaagaaagcttgtagatccacctattacctgtaaaatgtaaatatgac
ccatggtgaatgagccatgttaataaattctttgctatctcaggtttaac
attcaagcttttgttcctatgactttccatcaagttaatagtaaagcctg
tgaactcctagattgataaaatatcacatcaaaaaaataacagcaaattt
tggaaaaacttgtttcctggggaaaatttcctgaaaggaccaagctttaa
tgtgagcaaatgtcaaagcgaagcaaggaacacttttgtagtttccatga
aagaacgggactgctgtgtttgagttgtaatcttttataaatcgttcatc
atcaccatcacca

gaattcttaatctttccaagacatttaacatgaggggatagtgaattttg
tcaaatctttttcagcatctaatgaaatgatcatgtgtttttcttttttc
ttgagtttgtttacacagtgaattatgttgatggatttccatattttgaa
ccatccctgtaaccctgaaatgaagcctacttgatcacattgaaagatca
ttttgaagtgttcttggaataggtttgtgagaattttgtctttttttcca
atttttattaaactaataaaatttattttaaaatatacaactcagaattg
acttttttaagtcatcaaaataatttataatagtgaaatgcctcttaaat
atacatgatatcttctgaagctaaaagtaatatgcactcaaacagttttc
aaaatctatttagaatattaaacatgatagaagtagaaaaaaacctccta
taaattcctctatgaaaggaaattgttacaagttcctgattagagagaga
ccaggctatcaccaagggagaatcctcagagtaactctggctttatagaa
taaattgtgtaatattccttttttctgtttctattttgtggaatggtttg
aagggtattggtattaggtcttctttgaaggtctaatagaattctgcact
aaaccaatctggtcctgggcttttttggttgggagccttttagtgactgc
ttctatatgtttagaggttatgggactgtttagatggtttatctgattgt
atttggtatctgtctacaaaattgttcattttgatgaacaaatgaacaat
tcctccagattttccagttttgttgaatagttttgtagaggatctgaatt
ttttaacaattccctcagctccgttgttatctctccttatcatttctgat
tttattattttgagataatttctcctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27910398_27911497
seq2: B6Ng01-210F16.b_45_1157 (reverse)

seq1  TGGTGATGGTGATGATG-ATGA-TTAT-AAAGATTACAACTCAAACACAA  47
      ||||||||||||||||| | || |||| ||||||||||||||||||||| 
seq2  TGGTGATGGTGATGATGAACGATTTATAAAAGATTACAACTCAAACACAG  50

seq1  CAGTCCC-TTCTTTCATGGAAACTAC-AAAGTGTTCCTTGC-TCGCTTTG  94
      ||||||| |||||||||||||||||| |||||||||||||| ||||||||
seq2  CAGTCCCGTTCTTTCATGGAAACTACAAAAGTGTTCCTTGCTTCGCTTTG  100

seq1  ACATTTGCTCACATTAAGCTTTGTTCCTTTCAGGAAATTT--CCCAGGAA  142
      |||||||||||||||||   ||| ||||||||||||||||  ||||||||
seq2  ACATTTGCTCACATTAAAGCTTGGTCCTTTCAGGAAATTTTCCCCAGGAA  150

seq1  --CAGTTTTT-CAAAATTTGCTGTTA-TTTTTTGATGTGATATTTTATCA  188
         ||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  ACAAGTTTTTCCAAAATTTGCTGTTATTTTTTTGATGTGATATTTTATCA  200

seq1  ATCTAGGAGTTCACAGGCTTTACTATTAACTTGATGGAAAGTCATAGGAA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGAGTTCACAGGCTTTACTATTAACTTGATGGAAAGTCATAGGAA  250

seq1  C-AAAGCTTGAATGTTAAACCTGAGATAGCAAAGAATTTATTAACATGGC  287
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTTGAATGTTAAACCTGAGATAGCAAAGAATTTATTAACATGGC  300

seq1  TCATTCACCATGGGTCATATTTACATTTTACAGGTAATAGGTGGATCTAC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCACCATGGGTCATATTTACATTTTACAGGTAATAGGTGGATCTAC  350

seq1  AAGCTTTCTTGATGGCTTTTTGAAATGTAGGCATGATGCTTAGCTAAATA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCTTGATGGCTTTTTGAAATGTAGGCATGATGCTTAGCTAAATA  400

seq1  AAATTGGTATAAAAATTCAGCAGATGGCAGAGAATTTAACAGTGTGGGAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGTATAAAAATTCAGCAGATGGCAGAGAATTTAACAGTGTGGGAA  450

seq1  GGTTAGAATGTGTTCCTTGGAAAGTACAGAGAAGCCAAAAGTTTGCAAGT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAATGTGTTCCTTGGAAAGTACAGAGAAGCCAAAAGTTTGCAAGT  500

seq1  TTCAAAGAAGGGTTTAAAGCACACTTTTTTTTGTTGTTGTTGTTTACCTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAAGGGTTTAAAGCACACTTTTTTTTGTTGTTGTTGTTTACCTT  550

seq1  TTATAGGATATTTTCTTTATTTACTTTTCAAATGTTACCCCCACTCTAGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGATATTTTCTTTATTTACTTTTCAAATGTTACCCCCACTCTAGG  600

seq1  TCTCCCCTCCAGAAATGCCTTAATCAATTCCTCATTCCCCTGCCTCTATG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTCCAGAAATGCCTTAATCAATTCCTCATTCCCCTGCCTCTATG  650

seq1  AGGGTGCTCCTCTACCTGCCCATTCCTGCCTTCTGGCCCAGGAATTCCCC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTCCTCTACCTGCCCATTCCTGCCTTCTGGCCCAGGAATTCCCC  700

seq1  TACACTGGGGCATCGAACCCCCTGAGGCCCGAGGGCTGCTCCTCCTACTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGGGCATCGAACCCCCTGAGGCCCGAGGGCTGCTCCTCCTACTG  750

seq1  ATGTCCAACAAGGCAATCCTCTGCCACATATGTGGTTGATCCATGGTTAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAACAAGGCAATCCTCTGCCACATATGTGGTTGATCCATGGTTAC  800

seq1  CTACATGTATACTATTTGTTTGGTGGTCCAGTCCCGTTCTGGCCAGTTGA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTATACTATTTGTTTGGTGGTCCAGTCCCGTTCTGGCCAGTTGA  850

seq1  CACTGTTGCTCTCCCCATAGGGTTGCATACCGCCTCAGCTTCTTCAGTCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGCTCTCCCCATAGGGTTGCATACCGCCTCAGCTTCTTCAGTCC  900

seq1  CTGCTCCCACTCCTCCATCAGGGACCTCACACTCAGTCAAAATATCCCTA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCACTCCTCCATCAGGGACCTCACACTCAGTCAAAATATCCCTA  950

seq1  TTTAAAAATGAGGGAATGTGGAGGAGGTATGGGATGTGGAACAGTCTGAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATGAGGGAATGTGGAGGAGGTATGGGATGTGGAACAGTCTGAG  1000

seq1  GGTAGACTGGGACAGGGGGATAAAATATGGAGTGTAAATAAATATATAAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACTGGGACAGGGGGATAAAATATGGAGTGTAAATAAATATATAAA  1050

seq1  TAAAATTTTAAAAATAAAATAAAATAAAATAAAAAACAGGGAACACAGTT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTAAAAATAAAATAAAATAAAATAAAAAACAGGGAACACAGTT  1100

seq1  ACTCAGAGAATTC  1100
      |||||||||||||
seq2  ACTCAGAGAATTC  1113


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