BAC Information

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BAC

Clone NameB6Ng01-211F23
Chromosome11 (Build37)
Map Location 118,862,962 - 119,010,678
singlet/doubletdoublet
Overlap geneCbx2, Cbx8, Cbx4, Tbc1d16
Upstream genePgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7
Downstream geneCcdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211F23.bB6Ng01-211F23.g
ACCGA029457GA029458
length981178
definitionB6Ng01-211F23.b B6Ng01-211F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,009,710 - 119,010,678)(118,862,962 - 118,863,139)
sequence
gaattcctagaccaccgctcccccgaaagcccccatccttcttccgtgtc
aggattgaagactttcagctgtccaggctggagagcctgtcgtgaatgcc
tgccacctggccaggcaccacaaggtcccagcagccccggatggagctgc
caatactggcgctgtcttcaggtgaagtggaggatgatgggtgatgttcc
ctagagcagggacctgtggacccaggtggcctgaggcagactcagacttg
gcagggcccctctgagtttttctgtgtccccccgcagacggactacttcc
acctgttcatctgtgtggccatcgtcgccatctacggggatgatgtcatc
gagcagcagctggccacggatcagatgctgctgcacttcggaaacctggc
catgcatatgaatggagagctggtgctcaggaaggtgggtgccctgccct
ggcccgtcgggcccaccctgcccataaagcagggcatatcatatgcttta
cggcctcacccctgcacagggagggagggaggggtgagcaagatagtaga
ggaaggacaaggggttctaggaattccctgttactgagccctgatactca
cacctcacagccccacccctacatgtaaggccttgcccttacctcaagga
cccagccctgcacacagaaaccctcccatacctcacagccccacccctgc
ccatggagcccagtccacaccacagaacattaccccaaacatggactcag
cttgcatctagagcccctctcatatcacagagaccccgcctctgcacaca
ggtaccacccacaacacatagctccaccctacctttgtttgggttttttc
tctaccaagtccgtgtgattggcaacctgtgctgccttccttaagcccag
tgggggcttgccgtggctctccttggtccccgtggtcctaaagagggcca
ttccctgggacacaaccctctttgatttgct
tcatcgtagagtcctggctcccaggaagccacagaggtctcacccatgtg
gccaacagctgcactgatttcagttgggaacagccatggggacagcattc
cacagcagactctctctctctctctctttctgtgagagagagagagagag
agagagagagagagagagagagagagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_119009710_119010678
seq2: B6Ng01-211F23.b_45_1025 (reverse)

seq1  AGCAAATCAAAGA-GGCTGTGT-CCAGGG-ATGGCCCTC-TTAGGACCAC  46
      ||||||||||||| || ||||| |||||| ||||||||| ||||||||||
seq2  AGCAAATCAAAGAGGGTTGTGTCCCAGGGAATGGCCCTCTTTAGGACCAC  50

seq1  GGGGACCAAGGAGAGCCACGGCA--GCCCCACTGGGC-TAAGG-AGGCAG  92
      |||||||||||||||||||||||   ||||||||||| ||||| ||||||
seq2  GGGGACCAAGGAGAGCCACGGCAAGCCCCCACTGGGCTTAAGGAAGGCAG  100

seq1  CACAGG-TGCCAATCACACGGACTTGGTAGAG-AAAAACCCAA--CAAGG  138
      |||||| ||||||||||||||||||||||||| ||||||||||   ||||
seq2  CACAGGTTGCCAATCACACGGACTTGGTAGAGAAAAAACCCAAACAAAGG  150

seq1  TAGGGTGGAGCTATGTGTTGTGGGTGGTACCTGTGTGCAGAGGCGGGGTC  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGGAGCTATGTGTTGTGGGTGGTACCTGTGTGCAGAGGCGGGGTC  200

seq1  TCTGTGATATGAGAGGGGCTCTAGATGCAAGCTGAGTCCATGTTTGGGGT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATATGAGAGGGGCTCTAGATGCAAGCTGAGTCCATGTTTGGGGT  250

seq1  AATGTTCTGTGGTGTGGACTGGGCTCCATGGGCAGGGGTGGGGCTGTGAG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTGTGGTGTGGACTGGGCTCCATGGGCAGGGGTGGGGCTGTGAG  300

seq1  GTATGGGAGGGTTTCTGTGTGCAGGGCTGGGTCCTTGAGGTAAGGGCAAG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGAGGGTTTCTGTGTGCAGGGCTGGGTCCTTGAGGTAAGGGCAAG  350

seq1  GCCTTACATGTAGGGGTGGGGCTGTGAGGTGTGAGTATCAGGGCTCAGTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACATGTAGGGGTGGGGCTGTGAGGTGTGAGTATCAGGGCTCAGTA  400

seq1  ACAGGGAATTCCTAGAACCCCTTGTCCTTCCTCTACTATCTTGCTCACCC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAATTCCTAGAACCCCTTGTCCTTCCTCTACTATCTTGCTCACCC  450

seq1  CTCCCTCCCTCCCTGTGCAGGGGTGAGGCCGTAAAGCATATGATATGCCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTCCCTGTGCAGGGGTGAGGCCGTAAAGCATATGATATGCCC  500

seq1  TGCTTTATGGGCAGGGTGGGCCCGACGGGCCAGGGCAGGGCACCCACCTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATGGGCAGGGTGGGCCCGACGGGCCAGGGCAGGGCACCCACCTT  550

seq1  CCTGAGCACCAGCTCTCCATTCATATGCATGGCCAGGTTTCCGAAGTGCA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCACCAGCTCTCCATTCATATGCATGGCCAGGTTTCCGAAGTGCA  600

seq1  GCAGCATCTGATCCGTGGCCAGCTGCTGCTCGATGACATCATCCCCGTAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCTGATCCGTGGCCAGCTGCTGCTCGATGACATCATCCCCGTAG  650

seq1  ATGGCGACGATGGCCACACAGATGAACAGGTGGAAGTAGTCCGTCTGCGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGACGATGGCCACACAGATGAACAGGTGGAAGTAGTCCGTCTGCGG  700

seq1  GGGGACACAGAAAAACTCAGAGGGGCCCTGCCAAGTCTGAGTCTGCCTCA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACACAGAAAAACTCAGAGGGGCCCTGCCAAGTCTGAGTCTGCCTCA  750

seq1  GGCCACCTGGGTCCACAGGTCCCTGCTCTAGGGAACATCACCCATCATCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCTGGGTCCACAGGTCCCTGCTCTAGGGAACATCACCCATCATCC  800

seq1  TCCACTTCACCTGAAGACAGCGCCAGTATTGGCAGCTCCATCCGGGGCTG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCACCTGAAGACAGCGCCAGTATTGGCAGCTCCATCCGGGGCTG  850

seq1  CTGGGACCTTGTGGTGCCTGGCCAGGTGGCAGGCATTCACGACAGGCTCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACCTTGTGGTGCCTGGCCAGGTGGCAGGCATTCACGACAGGCTCT  900

seq1  CCAGCCTGGACAGCTGAAAGTCTTCAATCCTGACACGGAAGAAGGATGGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGACAGCTGAAAGTCTTCAATCCTGACACGGAAGAAGGATGGG  950

seq1  GGCTTTCGGGGGAGCGGTGGTCTAGGAATTC  969
      |||||||||||||||||||||||||||||||
seq2  GGCTTTCGGGGGAGCGGTGGTCTAGGAATTC  981

seq1: chr11_118862962_118863139
seq2: B6Ng01-211F23.g_70_247

seq1  TCATCGTAGAGTCCTGGCTCCCAGGAAGCCACAGAGGTCTCACCCATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGTAGAGTCCTGGCTCCCAGGAAGCCACAGAGGTCTCACCCATGTG  50

seq1  GCCAACAGCTGCACTGATTTCAGTTGGGAACAGCCATGGGGACAGCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGCTGCACTGATTTCAGTTGGGAACAGCCATGGGGACAGCATTC  100

seq1  CACAGCAGACTCTCTCTCTCTCTCTCTTTCTGTGAGAGAGAGAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGACTCTCTCTCTCTCTCTCTTTCTGTGAGAGAGAGAGAGAGAG  150

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGTG  178
      ||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGTG  178