BAC Information

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BAC

Clone NameB6Ng01-211I16
Chromosome11 (Build37)
Map Location 40,258,658 - 40,381,851
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039241
Downstream geneLOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285, Hspd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211I16.bB6Ng01-211I16.g
ACCGA029581GA029582
length1,141696
definitionB6Ng01-211I16.b B6Ng01-211I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,380,707 - 40,381,851)(40,258,658 - 40,259,336)
sequence
gaattcaccaatttatctcctcctacagtggtcttcagtttctaagtttt
taaagacatacttgggccaggacttgaactcaacattctcatcagaagac
agggacttccagggtgaagaggaaaagccttcaaatgtggacactcaact
ctaagaatgaacaggatgaaaactgggtgaagaagctagaatggtttaga
ccttgatcacttttcttgtagaaaattaggactctgactatgctccaagg
cagagtggggagagccctggggatgttctgaaaatcatgtccagtttgac
tggacaaccttggtcagtctcacaaggtcttcctcacatgtcttccaggc
agaagtttgatattcagtccttagtggaagttctctgccatgtgaggctg
gctgagtgagaggctggcatgctgttaacaacagaaaataccagcctttg
catgcttaagtgaaagcttgcagtgttttgaaggcattaatctgatgttt
ctactttaaccacatagaagcctgaatcctgagaagtctctgcaaaaaag
tatattttgttgacaggttattgtatggggtataacctaccacaaacatc
ttgtctacatcctcaagagtggtgaaaatgagtgataccgtatcaaagtt
gcaacggtggttgctacatggccttccatttttttgcttccttttttttc
tcacacttttttttttaaagtcagtgagtctattgagaaatcttattaaa
aatcacaaactgaacagcacacttttttttttccgaaccagaaacagatt
ttaaatgacaaaaaaaaccctcctttaatctttttgtaacatcttgacag
ttgtgccagaagatgtctgcttctgccttcaaaatataattgcttttggt
ctgaaataattcatttcccactcttttcctcttctataaaaccttgccct
ttcagctggatattttttcttaatttcgtcgctctttttctttttttggg
agggcaatgggaacccaggaggctagaagaccggatggatgtttgtagca
cacacactctgtaggagtaacataggaaatagaaccactgtgtatatagg
tgagcatgacattgaacacaattgtcatcccaatgactaac

gaattcaagagctggaggataggaatagtggcagaaaaaatctcatcctt
tacacaggacatggccaatatagtcacaacctcacaacagctatggcttg
ttggattgggtcagcaaaggacaggttctttcaagagtagacatgaacag
agtccacatgatcctattacattttgatgaactattagctactgataaat
tctgacagaaggggagccattatttttgggtggtaaccactggcaattct
ggttccactggcaataaccaggttccaatggatagttcctatcccatgag
cacacacaatgtcctggtcaaacccagaagaacaaaaacaaaaacaaaca
acaacaaaaaaacagtacaaatagatatgaacatgggaaagaagtgagta
atacatgaagtaagtaaacaggaaaatgaagaaagtgagagatggtggga
aataggcaacgaaggcatttatgtacatttatgaaaatgtccaacaacaa
atgtcattacgaatgagtttccctggacttgtgattaatgtcacacacac
acacacacacacacacacacacacacacacacacatatatatatatatac
acacacacacacacacacacacacacacacacatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40380707_40381851
seq2: B6Ng01-211I16.b_49_1189 (reverse)

seq1  GTTAGTTTCATTTGGATGACAAATTGTGTTCATTGTTCATTGCTCACCT-  49
      |||||  ||||| ||||||| ||||||||||| || ||| ||||||||| 
seq2  GTTAG--TCATTGGGATGAC-AATTGTGTTCAATG-TCA-TGCTCACCTA  45

seq1  TATACACAGTG--TCTATTTCCCTATGTTACTCCTTTACAGAGTGTGTGT  97
      |||||||||||  ||||||| |||||||||||||  ||||||||||||||
seq2  TATACACAGTGGTTCTATTT-CCTATGTTACTCC--TACAGAGTGTGTGT  92

seq1  GCTAC-AACATCCATTCCGGTCTTCTTAGCCTCCTGGTTTCCCATTGCCC  146
      ||||| |||||||| |||||||||| ||||||||||| ||||||||||||
seq2  GCTACAAACATCCA-TCCGGTCTTC-TAGCCTCCTGGGTTCCCATTGCCC  140

seq1  T-CCAAAAAAAGAAAAAGAGCGACGAAATTAAGAAAAAATATCCAGCTGA  195
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAAAAGAAAAAGAGCGACGAAATTAAGAAAAAATATCCAGCTGA  190

seq1  AAGGGCAAGGTTTTATAGAAGAGGAAAAGAGTGGGAAATGAATTATTTCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAAGGTTTTATAGAAGAGGAAAAGAGTGGGAAATGAATTATTTCA  240

seq1  GACCAAAAGCAATTATATTTTGAAGGCAGAAGCAGACATCTTCTGGCACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAAGCAATTATATTTTGAAGGCAGAAGCAGACATCTTCTGGCACA  290

seq1  ACTGTCAAGATGTTACAAAAAGATTAAAGGAGGGTTTTTTTTGTCATTTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAAGATGTTACAAAAAGATTAAAGGAGGGTTTTTTTTGTCATTTA  340

seq1  AAATCTGTTTCTGGTTCGG-AAAAAAAAAGTGTGCTGTTCAGTTTGTGAT  394
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATCTGTTTCTGGTTCGGAAAAAAAAAAGTGTGCTGTTCAGTTTGTGAT  390

seq1  TTTTAATAAGATTTCTCAATAGACTCACTGACTTTAAAAAAAAAAGTGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAAGATTTCTCAATAGACTCACTGACTTTAAAAAAAAAAGTGTG  440

seq1  AGAAAAAAAAGGAAGCAAAAAAATGGAAGGCCATGTAGCAACCACCGTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAGGAAGCAAAAAAATGGAAGGCCATGTAGCAACCACCGTTG  490

seq1  CAACTTTGATACGGTATCACTCATTTTCACCACTCTTGAGGATGTAGACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTGATACGGTATCACTCATTTTCACCACTCTTGAGGATGTAGACA  540

seq1  AGATGTTTGTGGTAGGTTATACCCCATACAATAACCTGTCAACAAAATAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTGTGGTAGGTTATACCCCATACAATAACCTGTCAACAAAATAT  590

seq1  ACTTTTTTGCAGAGACTTCTCAGGATTCAGGCTTCTATGTGGTTAAAGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTGCAGAGACTTCTCAGGATTCAGGCTTCTATGTGGTTAAAGTA  640

seq1  GAAACATCAGATTAATGCCTTCAAAACACTGCAAGCTTTCACTTAAGCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCAGATTAATGCCTTCAAAACACTGCAAGCTTTCACTTAAGCAT  690

seq1  GCAAAGGCTGGTATTTTCTGTTGTTAACAGCATGCCAGCCTCTCACTCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCTGGTATTTTCTGTTGTTAACAGCATGCCAGCCTCTCACTCAG  740

seq1  CCAGCCTCACATGGCAGAGAACTTCCACTAAGGACTGAATATCAAACTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCACATGGCAGAGAACTTCCACTAAGGACTGAATATCAAACTTC  790

seq1  TGCCTGGAAGACATGTGAGGAAGACCTTGTGAGACTGACCAAGGTTGTCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGAAGACATGTGAGGAAGACCTTGTGAGACTGACCAAGGTTGTCC  840

seq1  AGTCAAACTGGACATGATTTTCAGAACATCCCCAGGGCTCTCCCCACTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAACTGGACATGATTTTCAGAACATCCCCAGGGCTCTCCCCACTCT  890

seq1  GCCTTGGAGCATAGTCAGAGTCCTAATTTTCTACAAGAAAAGTGATCAAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGAGCATAGTCAGAGTCCTAATTTTCTACAAGAAAAGTGATCAAG  940

seq1  GTCTAAACCATTCTAGCTTCTTCACCCAGTTTTCATCCTGTTCATTCTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAACCATTCTAGCTTCTTCACCCAGTTTTCATCCTGTTCATTCTTA  990

seq1  GAGTTGAGTGTCCACATTTGAAGGCTTTTCCTCTTCACCCTGGAAGTCCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGTGTCCACATTTGAAGGCTTTTCCTCTTCACCCTGGAAGTCCC  1040

seq1  TGTCTTCTGATGAGAATGTTGAGTTCAAGTCCTGGCCCAAGTATGTCTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGATGAGAATGTTGAGTTCAAGTCCTGGCCCAAGTATGTCTTT  1090

seq1  AAAAACTTAGAAACTGAAGACCACTGTAGGAGGAGATAAATTGGTGAATT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTAGAAACTGAAGACCACTGTAGGAGGAGATAAATTGGTGAATT  1140

seq1  C  1145
      |
seq2  C  1141


seq1: chr11_40258658_40259336
seq2: B6Ng01-211I16.g_71_749

seq1  GAATTCAAGAGCTGGAGGATAGGAATAGTGGCAGAAAAAATCTCATCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCTGGAGGATAGGAATAGTGGCAGAAAAAATCTCATCCTT  50

seq1  TACACAGGACATGGCCAATATAGTCACAACCTCACAACAGCTATGGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGACATGGCCAATATAGTCACAACCTCACAACAGCTATGGCTTG  100

seq1  TTGGATTGGGTCAGCAAAGGACAGGTTCTTTCAAGAGTAGACATGAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTGGGTCAGCAAAGGACAGGTTCTTTCAAGAGTAGACATGAACAG  150

seq1  AGTCCACATGATCCTATTACATTTTGATGAACTATTAGCTACTGATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACATGATCCTATTACATTTTGATGAACTATTAGCTACTGATAAAT  200

seq1  TCTGACAGAAGGGGAGCCATTATTTTTGGGTGGTAACCACTGGCAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGAAGGGGAGCCATTATTTTTGGGTGGTAACCACTGGCAATTCT  250

seq1  GGTTCCACTGGCAATAACCAGGTTCCAATGGATAGTTCCTATCCCATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCACTGGCAATAACCAGGTTCCAATGGATAGTTCCTATCCCATGAG  300

seq1  CACACACAATGTCCTGGTCAAACCCAGAAGAACAAAAACAAAAACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAATGTCCTGGTCAAACCCAGAAGAACAAAAACAAAAACAAACA  350

seq1  ACAACAAAAAAACAGTACAAATAGATATGAACATGGGAAAGAAGTGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAAAACAGTACAAATAGATATGAACATGGGAAAGAAGTGAGTA  400

seq1  ATACATGAAGTAAGTAAACAGGAAAATGAAGAAAGTGAGAGATGGTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGAAGTAAGTAAACAGGAAAATGAAGAAAGTGAGAGATGGTGGGA  450

seq1  AATAGGCAACGAAGGCATTTATGTACATTTATGAAAATGTCCAACAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCAACGAAGGCATTTATGTACATTTATGAAAATGTCCAACAACAA  500

seq1  ATGTCATTACGAATGAGTTTCCCTGGACTTGTGATTAATGTCACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTACGAATGAGTTTCCCTGGACTTGTGATTAATGTCACACACAC  550

seq1  ACACACACACACACACACACACACACACACACACATATATATATATATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACATATATATATATATAC  600

seq1  ACACACACACACACACACACACACACACACACATATATATATATATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACATATATATATATATATAT  650

seq1  ATATATATATATATATATATATATATATA  679
      |||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATA  679


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