BAC Information

Click to search

BAC

Clone NameB6Ng01-213N12
Chromosome8 (Build37)11 (Build37)
Map Location 130,476,925 - 130,477,2375,048,798 - 5,049,571
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3, EG628847
Downstream geneNrp1, LOC668494, Itgb1, LOC100042659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213N12.bB6Ng01-213N12.g
ACCGA031254GA031255
length786782
definitionB6Ng01-213N12.b B6Ng01-213N12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(130,476,925 - 130,477,237)(5,048,798 - 5,049,571)
sequence
gaattctagaaagtctttcatttctttatttttctgtattgacccatttt
tcattcagtagacactgttcactttccatgagtttgtaggccttctgttg
ttcctattgttgaaacccgctttaatccacagtgatctgatgggatgcag
ggtttattattattattattattattttttaatctgttgagacttgcttt
gtgactgcatatgtggtcagttttggagaaagttccatgaggtgctaaga
agaaggtatattcttttctattaaggtgaaatgttctgtagatgtctgtt
aggtccatttagtttgtaatgtctctttatgccagtagttctctgtttag
tttttggctagatggcctgtacattggtgagagttgggtattgaagtctc
ctgctgccaatttgtgagggtcaatgtgtgatttaggctttagtaatgtt
tcttttacaaacttgggtgcccttgtgtttggcaaacagatgttaagaat
taaaacattatctttgagcatgtaatatcctccatctcttttgattaatt
tttgttcaaagtctattttgttagatattagatggctacaccagcttgtt
ttgtccttttagggtcacttgcttagaagaaaatttttttccaaccccat
ttctcaaggtaatgcctatctttgatgttgaggtatgtttcttgtattgc
agcagaaggatagattgtgactttgcatccattatgattctctctctctc
tctctctctctctctctctctctgttttgtgtgtgt

gaattcagtccaccctggctccgcattgtccccaagtcccgctgcttcag
tccttcactctgctcacacctcttgagcgttcttgtggccaagctgcccc
ttctcccactttgatctttagaatctatttacagagctccaccccctcac
tctggcaacttctatgcatcctttgggtcttaacctcaaggtccacacag
gcacagcagctctgagccatattctctcccacaagtgaggggaagagagc
ctaagcagggaccgggtccgtacagaagtcaacccaggcctgctcagagg
tgtttattaattgactgtgtgactgaacacagtagactgggcagaagagt
gaagacccagggctttcagagagacagcccaccatcctgaggacttcctt
ccctggggtgtggtcagtgataaggtgcctgagagccaggcaaggctgag
ctgggaggtagggcctgggcagggctggaaggagacaatacaacccttcc
tgtcccccccccaccacacacacacaccttgacccactcagcacccccag
agcctccagaggccaccaaagggggaagaaacaggccagaccagctcagc
ctggcaccagccaccctctctagtggacctacacactgccctccacttcc
cgcagcgaggggcccaggggactttgtctttcacagggcccagggctgcg
atccggtaacagagataggagctaatttgcagaaggcagccaagcgggcc
agggggcccaagtggcccgtttatgaaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_130476925_130477237
seq2: B6Ng01-213N12.b_670_832 (reverse)

seq1  ACACACACACACAGAGAGAGAGAGAGAGTGAGTGAGAGAGAGAGAGAGAG  50
          |||||||||   | | |||||||      |||||||||||||||||
seq2  ----ACACACACA---AAACAGAGAGA------GAGAGAGAGAGAGAGAG  37

seq1  AGAGAGAGAGAATCAGTGAGAGAAACAGAGAGAGAGAGATAGAGTTGAGG  100
      ||||||||||||||| | |  ||  || ||                    
seq2  AGAGAGAGAGAATCA-TAATGGATGCAAAG--------------------  66

seq1  TTTTACTTCATATTAAAAACTAATCATTTTTGACAGAAAGCCCCCTTCAG  150
                  | | || |||                     |||||  
seq2  ------------TCACAATCTA--------------------TCCTTC--  82

seq1  AAGTCCTGAAGGGAGCATAGAATGGAAAGAGTGAAATGGAGAGTCCCCAC  200
         | ||| |      ||| ||          ||||              
seq2  ---TGCTGCA------ATACAA----------GAAA--------------  99

seq1  CTCTTTCTCATAGCTCTACCAGTTCTTTTGTCTTCAGTGAAGGGGAGAGA  250
              |||| ||| |             | ||            | |
seq2  --------CATACCTCAA-------------CATC------------AAA  116

seq1  GAGAGAGCATT--CTTGGGATGTGTGCTATGAAATCACAATCAGGGACAA  298
      || || |||||  |||| ||  || | |  ||||                
seq2  GATAG-GCATTACCTTGAGAAATGGGGTTGGAAA----------------  149

seq1  CAAAATTTTCTTCTA  313
       ||||||||||||||
seq2  -AAAATTTTCTTCTA  163


seq1: chr11_5048798_5049571
seq2: B6Ng01-213N12.g_72_853

seq1  GAATTCAGTCCACCCTGGCTCCGCATTGTCCCCAAGTCCCGCTGCTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCACCCTGGCTCCGCATTGTCCCCAAGTCCCGCTGCTTCAG  50

seq1  TCCTTCACTCTGCTCACACCTCTTGAGCGTTCTTGTGGCCAAGCTGCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACTCTGCTCACACCTCTTGAGCGTTCTTGTGGCCAAGCTGCCCC  100

seq1  TTCTCCCACTTTGATCTTTAGAATCTATTTACAGAGCTCCACCCCCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCACTTTGATCTTTAGAATCTATTTACAGAGCTCCACCCCCTCAC  150

seq1  TCTGGCAACTTCTATGCATCCTTTGGGTCTTAACCTCAAGGTCCACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAACTTCTATGCATCCTTTGGGTCTTAACCTCAAGGTCCACACAG  200

seq1  GCACAGCAGCTCTGAGCCATATTCTCTCCCACAAGTGAGGGGAAGAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGCTCTGAGCCATATTCTCTCCCACAAGTGAGGGGAAGAGAGC  250

seq1  CTAAGCAGGGACCGGGTCCGTACAGAAGTCAACCCAGGCCTGCTCAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAGGGACCGGGTCCGTACAGAAGTCAACCCAGGCCTGCTCAGAGG  300

seq1  TGTTTATTAATTGACTGTGTGACTGAACACAGTAGACTGGGCAGAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTAATTGACTGTGTGACTGAACACAGTAGACTGGGCAGAAGAGT  350

seq1  GAAGACCCAGGGCTTTCAGAGAGACAGCCCACCATCCTGAGGACTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCAGGGCTTTCAGAGAGACAGCCCACCATCCTGAGGACTTCCTT  400

seq1  CCCTGGGGTGTGGTCAGTGATAAGGTGCCTGAGAGCCAGGCAAGGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGTGTGGTCAGTGATAAGGTGCCTGAGAGCCAGGCAAGGCTGAG  450

seq1  CTGGGAGGTAGGGCCTGGGCAGGGCTGGAAGGAGACAATACAACCCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGTAGGGCCTGGGCAGGGCTGGAAGGAGACAATACAACCCTTCC  500

seq1  TGTCCCCCCCCCACCACACACACACACCTTGACCCACTCAGCACCCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCCCCCCACCACACACACACACCTTGACCCACTCAGCACCCCCAG  550

seq1  AGCCTCCAGAGGCCACCAAAGGGGGAAGAAACAGGCCAGACCAGCTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCAGAGGCCACCAAAGGGGGAAGAAACAGGCCAGACCAGCTCAGC  600

seq1  CTGGCACCAGCCACCCTCTCTAGTGGACCTACACACTGCCCTCCACTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACCAGCCACCCTCTCTAGTGGACCTACACACTGCCCTCCACTTCC  650

seq1  CGCAGCGAGGGGCCCAGGGGACTTTGTC-TTCACAGGGCCCAGGGCTGCG  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CGCAGCGAGGGGCCCAGGGGACTTTGTCTTTCACAGGGCCCAGGGCTGCG  700

seq1  ATCCGG-AACAGAGATAGGAGCTAA-TTGCAGAAGGCAGCCAAGCGGGCC  747
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCCGGTAACAGAGATAGGAGCTAATTTGCAGAAGGCAGCCAAGCGGGCC  750

seq1  AGGGG--CCAAG-GGCC--GTTATGAAAAGAA  774
      |||||  ||||| ||||   ||||||||||||
seq2  AGGGGGCCCAAGTGGCCCGTTTATGAAAAGAA  782


| Home | SequenceCutter | Blast | Download |