BAC Information

Click to search

BAC

Clone NameB6Ng01-214A13
Chromosome11 (Build37)
Map Location 61,306,414 - 61,471,797
singlet/doubletdoublet
Overlap geneMapk7, 3110043A19Rik, Eppb9, Epn2, Grap
Upstream geneMyo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4
Downstream geneSlc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214A13.bB6Ng01-214A13.g
ACCGA031394GA031395
length3121,139
definitionB6Ng01-214A13.b B6Ng01-214A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,471,486 - 61,471,797)(61,306,414 - 61,307,550)
sequence
aatgatgaaaagatagggggacagtttccaaggtagagggaataggggga
cagccagggcagaagcccaactttggctccttgaaaagaggccacgggtc
tgaggagaagtgcactagctacatggccataggggaagggcagggcaggg
agagatgctcagattccagacaggagtccagagctggaaggtttcagggg
caggcggctagggtgcatggtaccatcagcttcccagggagatatcagtc
tgagtccccggggcaagctaatcatggagagagagagagagagagagaga
gagagagagaga
gaattctccatagggcacagtaggcttcaggatgtccttgatggcgatga
tattgtcgtgtttgaagtgtttgaggatcttcagctccctgagggtccgt
ttggcattggtcaccacatcaaaagcattaggtatcttcttgatggccac
ctgctggcctggggagcaggaaaagggcatataccagagagtaccttcaa
gttagctgcaggtcccttccagcactgctcttctggagcccagatagcag
taagtacctactgtgtgcagggccctgtgtgtaacatatatcaaatttta
atttcgcaactgcctcgtgaaacggctgctaatagctcacatagagagga
ggcgcggctagttagcagtggttgtgactgtactaactgatcctccctcc
ctccctcctcacatagtcagtccatcccagatcctccccattcttccacc
actccatcgtgccaatctctggctctagaacatatctcttttggacacca
aagagcatctctctattctggcttacagggaatatccttttcctaaggag
aaagtaggctgactgggagaagcaggggttcctgagaagggtacctaacg
gggagctggcacctagtccgtaagcgtgagtggaaccagaatccccggcg
cagctgatcctcctgggaccgtgcgggttcctcaccgcctctggaaagca
gtccacacatgctgagcctcaggaagccagctcacccgtgaggcggcggc
gcgccgaagacaccaccccgtaggccccattgcctatggtctcgatgatc
tcgtactcgtcccccacgtcaaaggtcacgtcgaaaggagcgggctttga
gcagggccaggttcttggccaccacagaggcagcggtgtgaacgggttct
gccttcaccctcccagggggctcccagagccatcttcgccgtcctcctct
tcagcggttcggccatggtctgtacgaagcgctgatgagaagatcgtcct
gaggcctctcagttccgcctcttgtgggtttggaggcaggacctggtgca
gccaggcaagaggggactgctggcacagagaatccctcacgtcccaggaa
tcaggggcgctggcccgccccggaagaaagggtaggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61471486_61471797
seq2: B6Ng01-214A13.b_53_364 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATGATTAGCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATGATTAGCTTGC  50

seq1  CCCGGGGACTCAGACTGATATCTCCCTGGGAAGCTGATGGTACCATGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGACTCAGACTGATATCTCCCTGGGAAGCTGATGGTACCATGCAC  100

seq1  CCTAGCCGCCTGCCCCTGAAACCTTCCAGCTCTGGACTCCTGTCTGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCGCCTGCCCCTGAAACCTTCCAGCTCTGGACTCCTGTCTGGAAT  150

seq1  CTGAGCATCTCTCCCTGCCCTGCCCTTCCCCTATGGCCATGTAGCTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATCTCTCCCTGCCCTGCCCTTCCCCTATGGCCATGTAGCTAGTG  200

seq1  CACTTCTCCTCAGACCCGTGGCCTCTTTTCAAGGAGCCAAAGTTGGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCCTCAGACCCGTGGCCTCTTTTCAAGGAGCCAAAGTTGGGCTT  250

seq1  CTGCCCTGGCTGTCCCCCTATTCCCTCTACCTTGGAAACTGTCCCCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGGCTGTCCCCCTATTCCCTCTACCTTGGAAACTGTCCCCCTAT  300

seq1  CTTTTCATCATT  312
      ||||||||||||
seq2  CTTTTCATCATT  312

seq1: chr11_61306414_61307550
seq2: B6Ng01-214A13.g_63_1201

seq1  GAATTCTCCATAGGGCACAGTAGGCTTCAGGATGTCCTTGATGGCGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATAGGGCACAGTAGGCTTCAGGATGTCCTTGATGGCGATGA  50

seq1  TATTGTCGTGTTTGAAGTGTTTGAGGATCTTCAGCTCCCTGAGGGTCCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCGTGTTTGAAGTGTTTGAGGATCTTCAGCTCCCTGAGGGTCCGT  100

seq1  TTGGCATTGGTCACCACATCAAAAGCATTAGGTATCTTCTTGATGGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTGGTCACCACATCAAAAGCATTAGGTATCTTCTTGATGGCCAC  150

seq1  CTGCTGGCCTGGGGAGCAGGAAAAGGGCATATACCAGAGAGTACCTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCCTGGGGAGCAGGAAAAGGGCATATACCAGAGAGTACCTTCAA  200

seq1  GTTAGCTGCAGGTCCCTTCCAGCACTGCTCTTCTGGAGCCCAGATAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTGCAGGTCCCTTCCAGCACTGCTCTTCTGGAGCCCAGATAGCAG  250

seq1  TAAGTACCTACTGTGTGCAGGGCCCTGTGTGTAACATATATCAAATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACCTACTGTGTGCAGGGCCCTGTGTGTAACATATATCAAATTTTA  300

seq1  ATTTCGCAACTGCCTCGTGAAACGGCTGCTAATAGCTCACATAGAGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGCAACTGCCTCGTGAAACGGCTGCTAATAGCTCACATAGAGAGGA  350

seq1  GGCGCGGCTAGTTAGCAGTGGTTGTGACTGTACTAACTGATCCTCCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCGGCTAGTTAGCAGTGGTTGTGACTGTACTAACTGATCCTCCCTCC  400

seq1  CTCCCTCCTCACATAGTCAGTCCATCCCAGATCCTCCCCATTCTTCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCTCACATAGTCAGTCCATCCCAGATCCTCCCCATTCTTCCACC  450

seq1  ACTCCATCGTGCCAATCTCTGGCTCTAGAACATATCTCTTTTGGACACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATCGTGCCAATCTCTGGCTCTAGAACATATCTCTTTTGGACACCA  500

seq1  AAGAGCATCTCTCTATTCTGGCTTACAGGGAATATCCTTTTCCTAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATCTCTCTATTCTGGCTTACAGGGAATATCCTTTTCCTAAGGAG  550

seq1  AAAGTAGGCTGACTGGGAGAAGCAGGGGTTCCTGAGAAGGGTACCTAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGCTGACTGGGAGAAGCAGGGGTTCCTGAGAAGGGTACCTAACG  600

seq1  GGGAGCTGGCACCTAGTCCGTAAGCGTGAGTGGAACCAGAATCCCCGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTGGCACCTAGTCCGTAAGCGTGAGTGGAACCAGAATCCCCGGCG  650

seq1  CAGCTGATCCTCCTGGGACCGTGCGGGTTCCTCACCGCCTCTGGAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATCCTCCTGGGACCGTGCGGGTTCCTCACCGCCTCTGGAAAGCA  700

seq1  GTCCACACATGCTGAGCCTCAGGAAGCCAGCTCACCCGTGAGGCGGCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACACATGCTGAGCCTCAGGAAGCCAGCTCACCCGTGAGGCGGCGGC  750

seq1  GCGCCGAAGACACCACCCCGTAGGCCCCATTGCCTATGGTCTCGATGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCGAAGACACCACCCCGTAGGCCCCATTGCCTATGGTCTCGATGATC  800

seq1  TCGTACTCGTCCCCCACGTCAAAGGTCACGTCG-AAGGAGCGGGCTTTGA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCGTACTCGTCCCCCACGTCAAAGGTCACGTCGAAAGGAGCGGGCTTTGA  850

seq1  GCAGGGCCAGGTTCTTGGCCACCACAGAGGCAGCGGTGTGAACGGGTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCAGGTTCTTGGCCACCACAGAGGCAGCGGTGTGAACGGGTTCT  900

seq1  GCCTTCACCCTCCCAGGGGGCTCCCCAGAGCCATCTTCGCCGTCCTCCTC  949
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  GCCTTCACCCTCCCAGGGGGCT-CCCAGAGCCATCTTCGCCGTCCTCCT-  948

seq1  CTTCAGCGGTTCGGCCATGGTCTGTACGAAGCGCTGATGAGAAGATCGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCGGTTCGGCCATGGTCTGTACGAAGCGCTGATGAGAAGATCGTC  998

seq1  CTGAGGGCCTCTCAGTTCCGCCTC-TGTGGGTTTGGAGGCAGGACCT-GT  1047
      |||| ||||||||||||||||||| |||||||||||||||||||||| ||
seq2  CTGA-GGCCTCTCAGTTCCGCCTCTTGTGGGTTTGGAGGCAGGACCTGGT  1047

seq1  GCAG-CAGGCGAGAGGGGACCGCTGGCACAGAGAA--CCCCACGGCCCAG  1094
      |||| ||||| ||||||||| ||||||||||||||  || |||| |||||
seq2  GCAGCCAGGCAAGAGGGGACTGCTGGCACAGAGAATCCCTCACGTCCCAG  1097

seq1  GATCCAGGGGGGCGCGGCGCGGCCCCGGAAGAAAGGG-AGGGGC  1137
      ||  ||  ||||||| |  | |||||||||||||||| ||||||
seq2  GAATCA--GGGGCGCTGGCCCGCCCCGGAAGAAAGGGTAGGGGC  1139