BAC Information

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BAC

Clone NameB6Ng01-214J03
Chromosome11 (Build37)
Map Location 79,008,536 - 79,242,210
singlet/doubletdoublet
Overlap geneLOC100042697, Wsb1, Nf1
Upstream gene4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1
Downstream geneOmg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214J03.bB6Ng01-214J03.g
ACCGA031785GA031786
length4101,086
definitionB6Ng01-214J03.b B6Ng01-214J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,241,795 - 79,242,210)(79,008,536 - 79,009,625)
sequence
acttcctttacctccatagcctcctgagcgacctctggcatgtgtgactg
aggaaccagttgtacgagccctgtaattagttctgctgtactgctctgag
tttcagggccctgttttcttggattctgtaggagaaaaacaaacttcagt
tttgcttttaataactgtatttattatttatatattatttattatttata
tgcatgtgtgtagacaggacatgggtgcaggtggccatggaggcagaaga
gtgttggcttccttggagctggagctacagtcagtagtgatctgcctgcc
tgtgtctgggaaccaaaggcaggcactttggaaaaagcagaaagtactta
agcactgagccatctctccggccccgtcaatcttcacattctgggttggg
ggggtggggg
gaattctccatgtagagcaggtttcccttgaacttacagaggtctacctg
cccctgcctttatggtgtggagatcaaagctgcccattcccacccgtttc
tgtgaatggaaatatctctcatgagtgaagatatctaaggactggagaga
tggctccatggttaagagcactgactgctcttttagaggacccaggtttg
atttccagcacccacatggttctcacaaccatttgtagctccaggtctag
gggacccaatgccctcttctggcctctgagagcactagacccacacaagg
tacacagattaaagataaagagtagcaagatggcttagtggatgaaaatg
cttgctgccaagcctggagacatgagttcaatttccaggacctcttagag
taaaagaagagaaccaacccccccaacttgctcctccccaccccgacctc
cacatgtgggtcatgccatgtatgtgtgtatgcagaaataaataaattgt
gattttttaaaaaatgtttaaatgaatccattatttataaaaagagaaag
atgagggacaagggtgtgcctcaattggcagagcccttccctaaatgcat
caagtcccaggtttggtttttagtgccatataaaccatgagtggtggcac
ttgcctgtaatcccaacacttaagtagaggcaggaggttcagaagttcaa
ggccatgctttgctatgcagtgagttacaggacaagctacaatatgtaaa
acagaaaaagaaaaaaaaaaaggtgaatatagcccatgcctttaattcca
gcactcgggaggcagagtcaagtcaatctctgaatttgaggctagcctgg
tctacagagtgagttccaggacagccagggctacacagagaaaccctgtc
tcagaaaaataaaaccttaagaaaagaaaacgtgaagataaattgaagat
gttaagggaggcaggggggcacagactcactgtccaagccctattgttat
atgattgtgcaaaggagtcttgaggagaaactcttcttacaaaacagcat
cttcgattcagaaggaatgtgaacatagctctgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79241795_79242210
seq2: B6Ng01-214J03.b_41_456 (reverse)

seq1  CCCCCACCCCCCCAACCCAGAATGTGAAGATTGACGGGGCCGGAGAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCCCCAACCCAGAATGTGAAGATTGACGGGGCCGGAGAGATG  50

seq1  GCTCAGTGCTTAAGTACTTTCTGCTTTTTCCAAAGTGCCTGCCTTTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGCTTAAGTACTTTCTGCTTTTTCCAAAGTGCCTGCCTTTGGTT  100

seq1  CCCAGACACAGGCAGGCAGATCACTACTGACTGTAGCTCCAGCTCCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACACAGGCAGGCAGATCACTACTGACTGTAGCTCCAGCTCCAAGG  150

seq1  AAGCCAACACTCTTCTGCCTCCATGGCCACCTGCACCCATGTCCTGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAACACTCTTCTGCCTCCATGGCCACCTGCACCCATGTCCTGTCTA  200

seq1  CACACATGCATATAAATAATAAATAATATATAAATAATAAATACAGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCATATAAATAATAAATAATATATAAATAATAAATACAGTTAT  250

seq1  TAAAAGCAAAACTGAAGTTTGTTTTTCTCCTACAGAATCCAAGAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCAAAACTGAAGTTTGTTTTTCTCCTACAGAATCCAAGAAAACAG  300

seq1  GGCCCTGAAACTCAGAGCAGTACAGCAGAACTAATTACAGGGCTCGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGAAACTCAGAGCAGTACAGCAGAACTAATTACAGGGCTCGTACA  350

seq1  ACTGGTTCCTCAGTCACACATGCCAGAGGTCGCTCAGGAGGCTATGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTCCTCAGTCACACATGCCAGAGGTCGCTCAGGAGGCTATGGAGG  400

seq1  TAAAGGAAGTGAATTC  416
      ||||||||||||||||
seq2  TAAAGGAAGTGAATTC  416

seq1: chr11_79008536_79009625
seq2: B6Ng01-214J03.g_64_1149

seq1  GAATTCTCCATGTAGAGCAGGTTTCCCTTGAACTTACAGAGGTCTACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGTAGAGCAGGTTTCCCTTGAACTTACAGAGGTCTACCTG  50

seq1  CCCCTGCCTTTATGGTGTGGAGATCAAAGCTGCCCATTCCCACCCGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTTTATGGTGTGGAGATCAAAGCTGCCCATTCCCACCCGTTTC  100

seq1  TGTGAATGGAAATATCTCTCATGAGTGAAGATATCTAAGGACTGGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGGAAATATCTCTCATGAGTGAAGATATCTAAGGACTGGAGAGA  150

seq1  TGGCTCCATGGTTAAGAGCACTGACTGCTCTTTTAGAGGACCCAGGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCATGGTTAAGAGCACTGACTGCTCTTTTAGAGGACCCAGGTTTG  200

seq1  ATTTCCAGCACCCACATGGTTCTCACAACCATTTGTAGCTCCAGGTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCACCCACATGGTTCTCACAACCATTTGTAGCTCCAGGTCTAG  250

seq1  GGGACCCAATGCCCTCTTCTGGCCTCTGAGAGCACTAGACCCACACAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCAATGCCCTCTTCTGGCCTCTGAGAGCACTAGACCCACACAAGG  300

seq1  TACACAGATTAAAGATAAAGAGTAGCAAGATGGCTTAGTGGATGAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGATTAAAGATAAAGAGTAGCAAGATGGCTTAGTGGATGAAAATG  350

seq1  CTTGCTGCCAAGCCTGGAGACATGAGTTCAATTTCCAGGACCTCTTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCCAAGCCTGGAGACATGAGTTCAATTTCCAGGACCTCTTAGAG  400

seq1  TAAAAGAAGAGAACCAACCCCCCCAACTTGCTCCTCCCCACCCCGACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGAGAACCAACCCCCCCAACTTGCTCCTCCCCACCCCGACCTC  450

seq1  CACATGTGGGTCATGCCATGTATGTGTGTATGCAGAAATAAATAAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGGGTCATGCCATGTATGTGTGTATGCAGAAATAAATAAATTGT  500

seq1  GATTTTTTAAAAAATGTTTAAATGAATCCATTATTTATAAAAAGAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTAAAAAATGTTTAAATGAATCCATTATTTATAAAAAGAGAAAG  550

seq1  ATGAGGGACAAGGGTGTGCCTCAATTGGCAGAGCCCTTCCCTAAATGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGACAAGGGTGTGCCTCAATTGGCAGAGCCCTTCCCTAAATGCAT  600

seq1  CAAGTCCCAGGTTTGGTTTTTAGTGCCATATAAACCATGAGTGGTGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCCAGGTTTGGTTTTTAGTGCCATATAAACCATGAGTGGTGGCAC  650

seq1  TTGCCTGTAATCCCAACACTTAAGTAGAGGCAGGAGGTTCAGAAGTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGTAATCCCAACACTTAAGTAGAGGCAGGAGGTTCAGAAGTTCAA  700

seq1  GGCCATGCTTTGCTATGCAGTGAGTTACAGGACAAGCTACAATATGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGCTTTGCTATGCAGTGAGTTACAGGACAAGCTACAATATGTAAA  750

seq1  ACAGAAAAAG-AAAAAAAAAAGGTGAATATAGCCCATGCCTTTAATTCCA  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAGAAAAAAAAAAAGGTGAATATAGCCCATGCCTTTAATTCCA  800

seq1  GCACTCGGGAGGCAGAGTCAAGTCAATCTCTGAATTTGAGGCTAGCCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGGGAGGCAGAGTCAAGTCAATCTCTGAATTTGAGGCTAGCCTGG  850

seq1  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTC  900

seq1  TCAGAAAAATAAAACCTAAAGAAAAGAAAAACGTGAAGATAAATTGAAGA  949
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TCAGAAAAATAAAACCTTAAGAAAAG-AAAACGTGAAGATAAATTGAAGA  949

seq1  TGTTAAGGGGAGGCA-GGGGGCACAGAACTCACTGTCCAAAGCCCTA-TG  997
      |||||| |||||||| |||||||||| ||||||||||| |||||||| ||
seq2  TGTTAA-GGGAGGCAGGGGGGCACAG-ACTCACTGTCC-AAGCCCTATTG  996

seq1  TTATATGA-TGTGCCAAAAGGAGTC-TGAGGAGAAACTCTCCTTTACAAA  1045
      |||||||| |||||  ||||||||| |||||||||||||| | |||| ||
seq2  TTATATGATTGTGC--AAAGGAGTCTTGAGGAGAAACTCTTC-TTAC-AA  1042

seq1  AACAGGCATCTTCAGATCAGAA-GAAAGTGACCAATAGCTCTGTGG  1090
      |||| ||||||||   |||||| ||| |||| | ||||||||||||
seq2  AACA-GCATCTTCGATTCAGAAGGAATGTGAAC-ATAGCTCTGTGG  1086