BAC Information

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BAC

Clone NameB6Ng01-217B19
Chromosome11 (Build37)
Map Location 6,384,066 - 6,526,238
singlet/doubletdoublet
Overlap geneMyo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4
Upstream geneLOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb
Downstream geneWap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217B19.bB6Ng01-217B19.g
ACCGA033618GA033619
length1,101770
definitionB6Ng01-217B19.b B6Ng01-217B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,384,066 - 6,385,163)(6,525,473 - 6,526,238)
sequence
ggtctgtgtagatcaggtatctagatcttgggaccctccctccccgcttc
acccagaggctgggatttcaggcatgtggtgccatgctcacctcaaggca
tccttagtgacagcttgttctgatcaattgccaatatattttaaatagtg
tacagggagccactgaatccctggctctcaataaacgacctagggagtgt
ggaacattgtgaagtctgaggtggggccaagtcattgagatattgctgta
gttccctgtagattcttgtgttgctctgagctatgaccgcccccccccaa
ctgctcaacttgaacaggaaatagggtatacttcatctgtcaagacagtg
ctggaacaatttcatctaggtgaagggtaatgagagaatagggaaccctc
tagctacctcagtggactgtggaagaagccaggagtcactggactgcagc
ctgctgctgagctcagcctggctactcttagttgtagggacccatctgcc
ccttagcaaaggtctgttgtgtgtctcatgtgtttcaccttctcctcttc
tctgtcaagactcaggtgtgagggtcatctttgtagtcaaataaacagta
tgtgaaaagacctgacttggcccaggacacaccaagaacaagttctcagc
ccaaagggaacttatttgccccagagagacaaagacaggaagcaggggac
aggagcaaaaggaacagaaacaagggaaagggggagggatcctggccccc
aagggacaaaggactgcctctggatagacaaaagacagaaggagcctgaa
ggcaaaaggcagtttataaagggaaagggaaaacccacattaggatgaat
gagttcgttttgattggatgtgtcaattagggaggctaaaaggggctttt
tgatttgcggcacttcaattatgtgataagctggaccttgggtggtcagg
ttcaggaagagaaagtggcccaaataaagggcctagactcttgagggctg
gctttactagtggaatttagcaagtagcactgagaagaagagtaaaggta
aagctgtctaccacatatgtcatcatgcccaactacttagagccttcaat
a
gaattcaccctctccttcccgtctacgtttcccacgaccaggatctcact
acacttcccagtaccggaagcctgagcgcaacaaagatggcgactgcgga
aggggcggagggcgtggcctccgtccgggagcactgggccacctagcttc
cggcggcgcgccagtgacgtcagtgagcgcgccaggccgcgtggaggccg
taggctgatggaggtcagtgagggtgatcgccgccgcagtctggcgtcct
ggagagaccgggtttctgaacgtgggtatccgagacgggaagcgtggctg
ggaagggcagcagttagtaaggaccggcggggctgttgtggggggagcca
ggaaagggactctcgacaccgtgccccaagggcgctgttcggttgcaaat
tcggttccgggctgcgattgcgcacgcgctcctcggcccgcggtagacac
gaggcctatcccgggaagctccgctgcccgcagtgacccttggcgtcccc
tgccagtcacttttcgtgtttctgcattttaggtttcagggtcgatattt
acttagtcgcaggtcttgaaaatcggtagtttgccagtgctttttttttt
tttttttttttttttttttggttttttgagacagggttttctctgtgtag
ccctggcttgtcctggaacctcactctgtagaccaggctggcctcgaact
cagaaatccacctgcctctgccctccaagtgctgggattaaaaggcgtgc
accacccgcccggttctccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6384066_6385163
seq2: B6Ng01-217B19.b_51_1151

seq1  GGTCTGTGTAGATCAGGTATCTAGATCTTGGGACCCTCCCTCCCCGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGTAGATCAGGTATCTAGATCTTGGGACCCTCCCTCCCCGCTTC  50

seq1  ACCCAGAGGCTGGGATTTCAGGCATGTGGTGCCATGCTCACCTCAAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGGCTGGGATTTCAGGCATGTGGTGCCATGCTCACCTCAAGGCA  100

seq1  TCCTTAGTGACAGCTTGTTCTGATCAATTGCCAATATATTTTAAATAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTGACAGCTTGTTCTGATCAATTGCCAATATATTTTAAATAGTG  150

seq1  TACAGGGAGCCACTGAATCCCTGGCTCTCAATAAACGACCTAGGGAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGAGCCACTGAATCCCTGGCTCTCAATAAACGACCTAGGGAGTGT  200

seq1  GGAACATTGTGAAGTCTGAGGTGGGGCCAAGTCATTGAGATATTGCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTGTGAAGTCTGAGGTGGGGCCAAGTCATTGAGATATTGCTGTA  250

seq1  GTTCCCTGTAGATTCTTGTGTTGCTCTGAGCTATGACCGCCCCCCCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGTAGATTCTTGTGTTGCTCTGAGCTATGACCGCCCCCCCCCAA  300

seq1  CTGCTCAACTTGAACAGGAAATAGGGTATACTTCATCTGTCAAGACAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAACTTGAACAGGAAATAGGGTATACTTCATCTGTCAAGACAGTG  350

seq1  CTGGAACAATTTCATCTAGGTGAAGGGTAATGAGAGAATAGGGAACCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAATTTCATCTAGGTGAAGGGTAATGAGAGAATAGGGAACCCTC  400

seq1  TAGCTACCTCAGTGGACTGTGGAAGAAGCCAGGAGTCACTGGACTGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACCTCAGTGGACTGTGGAAGAAGCCAGGAGTCACTGGACTGCAGC  450

seq1  CTGCTGCTGAGCTCAGCCTGGCTACTCTTAGTTGTAGGGACCCATCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGAGCTCAGCCTGGCTACTCTTAGTTGTAGGGACCCATCTGCC  500

seq1  CCTTAGCAAAGGTCTGTTGTGTGTCTCATGTGTTTCACCTTCTCCTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCAAAGGTCTGTTGTGTGTCTCATGTGTTTCACCTTCTCCTCTTC  550

seq1  TCTGTCAAGACTCAGGTGTGAGGGTCATCTTTGTAGTCAAATAAACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAGACTCAGGTGTGAGGGTCATCTTTGTAGTCAAATAAACAGTA  600

seq1  TGTGAAAAGACCTGACTTGGCCCAGGACACACCAAGAACAAGTTCTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGACCTGACTTGGCCCAGGACACACCAAGAACAAGTTCTCAGC  650

seq1  CCAAAGGGAACTTATTTGCCCCAGAGAGACAAAGACAGGAAGCAGGGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGAACTTATTTGCCCCAGAGAGACAAAGACAGGAAGCAGGGGAC  700

seq1  AGGAGCAAAAGGAACAGAAACAAGGGAAAGGGGGAGGGATCCTGGCCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAAAAGGAACAGAAACAAGGGAAAGGGGGAGGGATCCTGGCCCCC  750

seq1  AAGGGACAAAGGACTGCCTCTGGATAGACAAAAGACAGAAGGAGCCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAAAGGACTGCCTCTGGATAGACAAAAGACAGAAGGAGCCTGAA  800

seq1  GGCAAAAGGCAGTTTATAAAGGGAAAGGGAAAACCCACATTAGGATGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGGCAGTTTATAAAGGGAAAGGGAAAACCCACATTAGGATGAAT  850

seq1  GAGTTCGTTTTGATTGGATGTGTCAATTAGGGAGGCTAAAAGGGGCTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGTTTTGATTGGATGTGTCAATTAGGGAGGCTAAAAGGGGCTTTT  900

seq1  TGA-TTGCGGCACTTCAA-TATGTTGAT-AGCTGGACCTT-GGTGGTCAG  946
      ||| |||||||||||||| |||| |||| ||||||||||| |||||||||
seq2  TGATTTGCGGCACTTCAATTATG-TGATAAGCTGGACCTTGGGTGGTCAG  949

seq1  GTTCAGGAAGAGAAAGTGG-CCAAATAAAGGG-CTAGAC-CTTGAGGGCT  993
      ||||||||||||||||||| |||||||||||| |||||| ||||||||||
seq2  GTTCAGGAAGAGAAAGTGGCCCAAATAAAGGGCCTAGACTCTTGAGGGCT  999

seq1  GGCTTTACTAGTGGAATTTAGCAGGTTAGCAC-GGGGAGAAGAGTAAAAG  1042
      ||||||||||||||||||||||| | |||||| | | |||||||| ||||
seq2  GGCTTTACTAGTGGAATTTAGCAAG-TAGCACTGAGAAGAAGAGT-AAAG  1047

seq1  GTAAAGCTGTCTACCACATTTGTCATCATGCCCCAGCCTAC-TAGAGCCC  1091
      ||||||||||||||||||| ||||||||||||| |  |||| ||||| ||
seq2  GTAAAGCTGTCTACCACATATGTCATCATGCCCAA--CTACTTAGAG-CC  1094

seq1  TTCAATA  1098
      |||||||
seq2  TTCAATA  1101

seq1: chr11_6525473_6526238
seq2: B6Ng01-217B19.g_70_838 (reverse)

seq1  GGAGAGCCGGGCGTGGTGGTGCACGCC-TTTAATCCCAGCACTTTGGAGG  49
      ||||| ||||||| ||||||||||||| |||||||||||||||| |  ||
seq2  GGAGAACCGGGCG-GGTGGTGCACGCCTTTTAATCCCAGCACTTGGAGGG  49

seq1  CAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  99

seq1  -GTTCCAGGAC-AGCCAGGGCTACACAGAG-AAACCCTGTCTCAAAAAAC  146
       |||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  GGTTCCAGGACAAGCCAGGGCTACACAGAGAAAACCCTGTCTCAAAAAAC  149

seq1  CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACTGGCAAACTACCGATT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCACTGGCAAACTACCGATT  199

seq1  TTCAAGACCTGCGACTAAGTAAATATCGACCCTGAAACCTAAAATGCAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACCTGCGACTAAGTAAATATCGACCCTGAAACCTAAAATGCAGA  249

seq1  AACACGAAAAGTGACTGGCAGGGGACGCCAAGGGTCACTGCGGGCAGCGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGAAAAGTGACTGGCAGGGGACGCCAAGGGTCACTGCGGGCAGCGG  299

seq1  AGCTTCCCGGGATAGGCCTCGTGTCTACCGCGGGCCGAGGAGCGCGTGCG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCGGGATAGGCCTCGTGTCTACCGCGGGCCGAGGAGCGCGTGCG  349

seq1  CAATCGCAGCCCGGAACCGAATTTGCAACCGAACAGCGCCCTTGGGGCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCGCAGCCCGGAACCGAATTTGCAACCGAACAGCGCCCTTGGGGCAC  399

seq1  GGTGTCGAGAGTCCCTTTCCTGGCTCCCCCCACAACAGCCCCGCCGGTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCGAGAGTCCCTTTCCTGGCTCCCCCCACAACAGCCCCGCCGGTCC  449

seq1  TTACTAACTGCTGCCCTTCCCAGCCACGCTTCCCGTCTCGGATACCCACG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAACTGCTGCCCTTCCCAGCCACGCTTCCCGTCTCGGATACCCACG  499

seq1  TTCAGAAACCCGGTCTCTCCAGGACGCCAGACTGCGGCGGCGATCACCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAACCCGGTCTCTCCAGGACGCCAGACTGCGGCGGCGATCACCCT  549

seq1  CACTGACCTCCATCAGCCTACGGCCTCCACGCGGCCTGGCGCGCTCACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACCTCCATCAGCCTACGGCCTCCACGCGGCCTGGCGCGCTCACTG  599

seq1  ACGTCACTGGCGCGCCGCCGGAAGCTAGGTGGCCCAGTGCTCCCGGACGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCACTGGCGCGCCGCCGGAAGCTAGGTGGCCCAGTGCTCCCGGACGG  649

seq1  AGGCCACGCCCTCCGCCCCTTCCGCAGTCGCCATCTTTGTTGCGCTCAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACGCCCTCCGCCCCTTCCGCAGTCGCCATCTTTGTTGCGCTCAGG  699

seq1  CTTCCGGTACTGGGAAGTGTAGTGAGATCCTGGTCGTGGGAAACGTAGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGGTACTGGGAAGTGTAGTGAGATCCTGGTCGTGGGAAACGTAGAC  749

seq1  GGGAAGGAGAGGGTGAATTC  766
      ||||||||||||||||||||
seq2  GGGAAGGAGAGGGTGAATTC  769