BAC Information

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BAC

Clone NameB6Ng01-217G06
Chromosome11 (Build37)
Map Location 60,698,682 - 60,880,897
singlet/doubletdoublet
Overlap geneGtlf3b, Map2k3, Kcnj12
Upstream geneMed9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11
Downstream geneLOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217G06.bB6Ng01-217G06.g
ACCGA033814GA033815
length423935
definitionB6Ng01-217G06.b B6Ng01-217G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,698,682 - 60,699,110)(60,879,968 - 60,880,897)
sequence
tcagatatgcttatagcagagaacaacttttaattttgtgactgaatcct
gggagagggacaatggaggtcactggcttaaaccgcattgggtaaagagt
gatcctaggaacatgtgcaatacaaactagagcttcggatttgcctacgg
ctgttctctgccatcctagaggatgcttggggatgcgaggacaggctggc
tgattcctgtttggggatggagatggctctgtgggtaaaagcacttgttg
ccttgcagaccaggttcagtctacactcagttttcagcacccacatatat
gaaggatctgactttctcttctcacccctgaggatgctaggcataaatgt
gccgcacagaggtacgtgtaagcaaaacacaaaaaatgtggtttggggat
ttatgtgggttgtttttttgttt
gaattcaagcccatctggacagcacaatccctggccacatctacatcaga
ggttcagagggacatggcctgcagactctgccaccgacagaggcatgggt
ggagaccagtagaccagacagctcaggaaggattcccagggtctatgtca
tgagccatagtgctactgcctggcagacacagacacagctatgaagcttg
agagccacagaaagagttcgtcaggcatggggcaaaacagccaagagcct
caagacatcctttaacggccaaggagggtttttaaagggtaaaggtactc
ccaaccaagacatacgggttccaacaggagagtcgagatctaaccctcat
gtctaatgcaaggtatcctaccacggaacctcaggccctacagggccacc
tgtcctcactttctctcctacagctgtttccgtcgatcacctcaccatgg
gcttgtttagctgaggcttggggctgtaatggtggatgctgtttctgtct
aggccaggaggcagagggttgacggggctggggaacccggggagcattct
gagaagacatctcagccccgggttcctgagccttccaggggaaggtggcc
aaggttggggtactcagacgccggggggaagctgccagatcccaggagcc
aggcttgtgtggcctagaggccttgagggacgtccagcgggtcatggtgg
ctctggctcgagctatgagcagcagctggcctgcagggaacagaatcaca
agaatcaagactgggggatcccagtcttagaaccctgctccaggaaagca
agccttgcttctggctaacccgtgtgctgcagccattcctagaaccacct
aggcattgtcacagatccgagaacgccactctgttggataattccacccc
acacccagagaaattcatctccgaagtttacaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60698682_60699110
seq2: B6Ng01-217G06.b_46_474

seq1  GAATTCTCAGATATGCTTATAGCAGAGAACAACTTTTAATTTTGTGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGATATGCTTATAGCAGAGAACAACTTTTAATTTTGTGACTG  50

seq1  AATCCTGGGAGAGGGACAATGGAGGTCACTGGCTTAAACCGCATTGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGGGAGAGGGACAATGGAGGTCACTGGCTTAAACCGCATTGGGTA  100

seq1  AAGAGTGATCCTAGGAACATGTGCAATACAAACTAGAGCTTCGGATTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGATCCTAGGAACATGTGCAATACAAACTAGAGCTTCGGATTTGC  150

seq1  CTACGGCTGTTCTCTGCCATCCTAGAGGATGCTTGGGGATGCGAGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGCTGTTCTCTGCCATCCTAGAGGATGCTTGGGGATGCGAGGACAG  200

seq1  GCTGGCTGATTCCTGTTTGGGGATGGAGATGGCTCTGTGGGTAAAAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGATTCCTGTTTGGGGATGGAGATGGCTCTGTGGGTAAAAGCAC  250

seq1  TTGTTGCCTTGCAGACCAGGTTCAGTCTACACTCAGTTTTCAGCACCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCTTGCAGACCAGGTTCAGTCTACACTCAGTTTTCAGCACCCAC  300

seq1  ATATATGAAGGATCTGACTTTCTCTTCTCACCCCTGAGGATGCTAGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAAGGATCTGACTTTCTCTTCTCACCCCTGAGGATGCTAGGCAT  350

seq1  AAATGTGCCGCACAGAGGTACGTGTAAGCAAAACACAAAAAATGTGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCCGCACAGAGGTACGTGTAAGCAAAACACAAAAAATGTGGTTT  400

seq1  GGGGATTTATGTGGGTTGTTTTTTTGTTT  429
      |||||||||||||||||||||||||||||
seq2  GGGGATTTATGTGGGTTGTTTTTTTGTTT  429

seq1: chr11_60879968_60880897
seq2: B6Ng01-217G06.g_69_1003 (reverse)

seq1  GGGTGTAAACTTC-GAGTTGATTTTCTCT-GGTGT-GGGTGGAA-TAT-C  45
      ||||||||||||| ||| ||| ||||||| ||||| |||||||| ||| |
seq2  GGGTGTAAACTTCGGAGATGAATTTCTCTGGGTGTGGGGTGGAATTATCC  50

seq1  AACAGAAGTGGGCGTTCTCGGATCTGTGACAATGCCTAGGTGGTTCTAGG  95
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACAG-AGT-GGCGTTCTCGGATCTGTGACAATGCCTAGGTGGTTCTAGG  98

seq1  AATGGCTGCAGCACACGGGTTAGCCAGAAGCAAGGC-TGCTTTCCTGGAG  144
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATGGCTGCAGCACACGGGTTAGCCAGAAGCAAGGCTTGCTTTCCTGGAG  148

seq1  CAGGGTTCT-AGACTGGGAT-CCCCAGTCTTTGATTCTTGTGATTCTGTT  192
      ||||||||| |||||||||| |||||||| ||||||||||||||||||||
seq2  CAGGGTTCTAAGACTGGGATCCCCCAGTC-TTGATTCTTGTGATTCTGTT  197

seq1  CCCTGCAGGCCAGCTGCTGCTCATAGCTCGAGCCAGAGCCACCATGACCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGGCCAGCTGCTGCTCATAGCTCGAGCCAGAGCCACCATGACCC  247

seq1  GCTGGACGTCCCTCAAGGCCTCTAGGCCACACAAGCCTGGCTCCTGGGAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACGTCCCTCAAGGCCTCTAGGCCACACAAGCCTGGCTCCTGGGAT  297

seq1  CTGGCAGCTTCCCCCCGGCGTCTGAGTACCCCAACCTTGGCCACCTTCCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGCTTCCCCCCGGCGTCTGAGTACCCCAACCTTGGCCACCTTCCC  347

seq1  CTGGAAGGCTCAGGAACCCGGGGCTGAGATGTCTTCTCAGAATGCTCCCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGCTCAGGAACCCGGGGCTGAGATGTCTTCTCAGAATGCTCCCC  397

seq1  GGGTTCCCCAGCCCCGTCAACCCTCTGCCTCCTGGCCTAGACAGAAACAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCCCAGCCCCGTCAACCCTCTGCCTCCTGGCCTAGACAGAAACAG  447

seq1  CATCCACCATTACAGCCCCAAGCCTCAGCTAAACAAGCCCATGGTGAGGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACCATTACAGCCCCAAGCCTCAGCTAAACAAGCCCATGGTGAGGT  497

seq1  GATCGACGGAAACAGCTGTAGGAGAGAAAGTGAGGACAGGTGGCCCTGTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGACGGAAACAGCTGTAGGAGAGAAAGTGAGGACAGGTGGCCCTGTA  547

seq1  GGGCCTGAGGTTCCGTGGTAGGATACCTTGCATTAGACATGAGGGTTAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGAGGTTCCGTGGTAGGATACCTTGCATTAGACATGAGGGTTAGA  597

seq1  TCTCGACTCTCCTGTTGGAACCCGTATGTCTTGGTTGGGAGTACCTTTAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGACTCTCCTGTTGGAACCCGTATGTCTTGGTTGGGAGTACCTTTAC  647

seq1  CCTTTAAAAACCCTCCTTGGCCGTTAAAGGATGTCTTGAGGCTCTTGGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAAACCCTCCTTGGCCGTTAAAGGATGTCTTGAGGCTCTTGGCT  697

seq1  GTTTTGCCCCATGCCTGACGAACTCTTTCTGTGGCTCTCAAGCTTCATAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCCCATGCCTGACGAACTCTTTCTGTGGCTCTCAAGCTTCATAG  747

seq1  CTGTGTCTGTGTCTGCCAGGCAGTAGCACTATGGCTCATGACATAGACCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGTGTCTGCCAGGCAGTAGCACTATGGCTCATGACATAGACCC  797

seq1  TGGGAATCCTTCCTGAGCTGTCTGGTCTACTGGTCTCCACCCATGCCTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCCTTCCTGAGCTGTCTGGTCTACTGGTCTCCACCCATGCCTCT  847

seq1  GTCGGTGGCAGAGTCTGCAGGCCATGTCCCTCTGAACCTCTGATGTAGAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTGGCAGAGTCTGCAGGCCATGTCCCTCTGAACCTCTGATGTAGAT  897

seq1  GTGGCCAGGGATTGTGCTGTCCAGATGGGCTTGAATTC  930
      ||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCAGGGATTGTGCTGTCCAGATGGGCTTGAATTC  935