BAC Information

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BAC

Clone NameB6Ng01-218D08
Chromosome11 (Build37)8 (Build37)
Map Location 69,410,586 - 69,411,46448,715,630 - 48,715,777
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCcdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53
Downstream geneAtp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218D08.bB6Ng01-218D08.g
ACCGA034399GA034400
length880408
definitionB6Ng01-218D08.b B6Ng01-218D08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,410,586 - 69,411,464)(48,715,630 - 48,715,777)
sequence
gaattccagaacatccagggctacaagaaaccctgtcttgaaaaaaaaaa
aaaaaacagtatgtacacacacacacacatacatatacactgaaagtaaa
ctgaggggcttgcacaggctatacaaacactgctactgagctgtccaacc
agcagatcaatgttataaacatggaagtgttaaaatcataaggtcatttc
cagttggaatgaaaactacacagagcttccactcactaacttcggtttta
atgtgttggaaaggaccaaaataacctgttggagagagggatgcctcagc
tgttaagagcacgggctgctcttccagaagactggggtcccattcccagc
acccacatggtagctcacaaccatctgtaatcccagttccaggcaagccg
atgccttcttctggccagcttgggccaggcatgaaagtggtacatagatg
tacctacaaaaatacccatatgcataaaataaaaataactcttagcaaga
ttgaaattgagtttggttctctctcactctctctatcaaaagagagagaa
aaagagagaagagagaagagagagagagagagagagatgcctgtcatccc
agtgactgggagactgatgcaggaagatggtagcaagttggagactggcc
taggctactttcatccttgcttcaaaaaggaggcaggaggcttttaattt
ttttttagacagggtctgcagctcaagctggggtcaaattcccattgaag
atgatgatggccttgaatgcctagaggttccagtcagcttcaacctcctg
gagtactggatcacaggcgtgtaccaccaccatactcagttttatgtggt
cctggaaactaatccagggggggggggggg
caaacatcgcacaactgcagaaactatctgcagctggcaaaaccacacct
ctgctagagcatgaggcaaatcatagtcagctgctgcaaagcatccccat
gtccccacatctggggtttaaacgaaaacatattcttatatttctatggt
ttttttttttatttgtttgctttttaaatgtttaaaattttacttacatt
ggtgttctgcctccatgtatatctgtgccagggtatcatattccctgcaa
ttggaattacagacggaaattgtgagttgccatctgggtgctgggatttg
aatcccgggtccatttggaagaaaagccagtgctcttaattgctgagcca
tttctccagccccacttctatgttttgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69410586_69411464
seq2: B6Ng01-218D08.b_46_924

seq1  GAATTCCAGAACATCCAGGGCTACAAGAAACCCTGTCTTGAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACATCCAGGGCTACAAGAAACCCTGTCTTGAAAAAAAAAA  50

seq1  AAAAAACAGTATGTACACACACACACACATACATATACACTGAAAGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAGTATGTACACACACACACACATACATATACACTGAAAGTAAA  100

seq1  CTGAGGGGCTTGCACAGGCTATACAAACACTGCTACTGAGCTGTCCAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGGCTTGCACAGGCTATACAAACACTGCTACTGAGCTGTCCAACC  150

seq1  AGCAGATCAATGTTATAAACATGGAAGTGTTAAAATCATAAGGTCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCAATGTTATAAACATGGAAGTGTTAAAATCATAAGGTCATTTC  200

seq1  CAGTTGGAATGAAAACTACACAGAGCTTCCACTCACTAACTTCGGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAATGAAAACTACACAGAGCTTCCACTCACTAACTTCGGTTTTA  250

seq1  ATGTGTTGGAAAGGACCAAAATAACCTGTTGGAGAGAGGGATGCCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTGGAAAGGACCAAAATAACCTGTTGGAGAGAGGGATGCCTCAGC  300

seq1  TGTTAAGAGCACGGGCTGCTCTTCCAGAAGACTGGGGTCCCATTCCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGAGCACGGGCTGCTCTTCCAGAAGACTGGGGTCCCATTCCCAGC  350

seq1  ACCCACATGGTAGCTCACAACCATCTGTAATCCCAGTTCCAGGCAAGCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATGGTAGCTCACAACCATCTGTAATCCCAGTTCCAGGCAAGCCG  400

seq1  ATGCCTTCTTCTGGCCAGCTTGGGCCAGGCATGAAAGTGGTACATAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCTTCTGGCCAGCTTGGGCCAGGCATGAAAGTGGTACATAGATG  450

seq1  TACCTACAAAAATACCCATATGCATAAAATAAAAATAACTCTTAGCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACAAAAATACCCATATGCATAAAATAAAAATAACTCTTAGCAAGA  500

seq1  TTGAAATTGAGTTTGGTTCTCTCTCACTCTCTCTATCAAAAGAGAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTGAGTTTGGTTCTCTCTCACTCTCTCTATCAAAAGAGAGAGAA  550

seq1  AAAGAGAGAAGAGAGAAGAGAGAGAGAGAGAGAGAGATGCCTGTCATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAAGAGAGAAGAGAGAGAGAGAGAGAGAGATGCCTGTCATCCC  600

seq1  AGTGACTGGGAGACTGATGCAGGAAGATGGTAGCAAGTTGGAGACTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGGGAGACTGATGCAGGAAGATGGTAGCAAGTTGGAGACTGGCC  650

seq1  TAGGCTACTTTCATCCTTGCTTCAAAAAGGAGGCAGGAGGCTTTTAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTACTTTCATCCTTGCTTCAAAAAGGAGGCAGGAGGCTTTTAATTT  700

seq1  TTTTTTAGACAGGGTCTGCAGCTCAAGCTGGGGTCAAATTCCCATTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGACAGGGTCTGCAGCTCAAGCTGGGGTCAAATTCCCATTGAAG  750

seq1  ATGATGATGGCCTTGAATGCCTAGAGGTTCCAGTCAGCTTCAACCTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATGGCCTTGAATGCCTAGAGGTTCCAGTCAGCTTCAACCTCCTG  800

seq1  GAGTACTGGATCACAGGCGTGTACCACCACCATACTCAGTTTTATGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTGGATCACAGGCGTGTACCACCACCATACTCAGTTTTATGTGGT  850

seq1  CCTGGAAACTAATCCAGGGGGGGGGGGGG  879
      |||||||||||||||||||||||||||||
seq2  CCTGGAAACTAATCCAGGGGGGGGGGGGG  879

seq1: chr8_48715630_48715777
seq2: B6Ng01-218D08.g_86_221 (reverse)

seq1  AAAAACATAGAAATATTATAAGAATGTATTTTTGTTTTAACCCCAGGTGT  50
      |||| ||||||||   ||||||||| | |||| |||| |||||||| |||
seq2  AAAACCATAGAAA---TATAAGAATATGTTTTCGTTTAAACCCCAGATGT  47

seq1  GGGGATAAGAGGATGCTCTGGACTGTCCACAGCAGGTGACTATGATTTGC  100
      ||||| | | ||||||| ||         |||||| ||||||||||||||
seq2  GGGGACATGGGGATGCTTTG---------CAGCAGCTGACTATGATTTGC  88

seq1  CTCATGCTCTAGCAGAGGTGTGGTTTTGCCAGCTGCAGATAGTTTCTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTCTAGCAGAGGTGTGGTTTTGCCAGCTGCAGATAGTTTCTG  136