BAC Information

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BAC

Clone NameB6Ng01-220J13
Chromosome11 (Build37)6 (Build37)
Map Location 115,781,998 - 115,782,451148,880,809 - 148,881,225
singlet/doubletsingletsinglet
Overlap geneRecql5
Upstream geneCd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, 2210020M01Rik
Downstream geneSap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220J13.bB6Ng01-220J13.g
ACCGA036115GA036116
length448916
definitionB6Ng01-220J13.b B6Ng01-220J13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,781,998 - 115,782,451)(148,880,809 - 148,881,225)
sequence
aaggccagcctaggggttgaatcatactatatcttaaaaacaacaaaata
aaccaagagaaaaagaaaaagcaaatgtctgcttagaaaaccccaatttg
gtggggagggtatgggggacttttgggatagcattctaaatgtaattgat
gaaaatatataataataaaaatattttaaaaaagaaaaagaaaaccccaa
tttgctgggcagtggtggcgcatgcctttaatcccagcacttgggaggca
gaggcaggtggatctctgaattcgaggccagtctggtctacagagtgagt
tccaggacagccagggctacacagagaaaccctgtctcggggaaaaaacc
aaaacaaaacaaaacaaaaaacaaaccaacaaaaaaccccaatttgcaag
acttcattaaacaacaaagagtggggcagggttgggtagggggtgggg
gaattctccttcgcctcggacgtgtcactccctgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacaggatgt
cagcgccatcttgtaacggcgaatgtgggggcggctcccaacaagttacc
catgtggttctggttttgaaggcacgaaggggttgtggaaattgcctcaa
tggtacttaaaggcacaggataatcaaaagggtcatacagagaagctgaa
acttggcaccaggaagaaagactaggagaggctattggtgagagcgcggc
ccagtgatagcggaagaccctgcagccgtttggagatgactgtaccatgg
gaggactaccaagaacagcaacaatcttggagcagagcagagcctagcag
accagttgtgtgtgctgcagagccaaagctggagaattgacccatgccct
ttggaagatccctagtgaatcccagacacttggatattgagttgtttata
ctgatggagtttggttttgctttgttcagacggtgcctgtgccttttttt
tttttttttttttggtttgtttttcaagacagggtttctctgtgtagccc
tggctgtcctggaaatcactttgtagaccaggctgtcctcgaactcagaa
atctgcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccacc
acgccctgctgcctgtgccctcttgaagggaagaaagtatctattttttt
atttgtttgttatgggaagcccacagctgagagtccttgaactttaaaaa
gatttggatttcagagagaaaggatatttaagagatgaagtgtttttgtt
ttttgtttttgatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115781998_115782451
seq2: B6Ng01-220J13.b_44_497 (reverse)

seq1  CCCCACCCCCTACCCAACCCTGCCCCACTCTTTGTTGTTTAATGAAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCTACCCAACCCTGCCCCACTCTTTGTTGTTTAATGAAGTCT  50

seq1  TGCAAATTGGGGTTTTTTGTTGGTTTGTTTTTTGTTTTGTTTTGTTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTGGGGTTTTTTGTTGGTTTGTTTTTTGTTTTGTTTTGTTTTGG  100

seq1  TTTTTTCCCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAAC  150

seq1  TCACTCTGTAGACCAGACTGGCCTCGAATTCAGAGATCCACCTGCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGTAGACCAGACTGGCCTCGAATTCAGAGATCCACCTGCCTCTG  200

seq1  CCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCCCAGCAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCACTGCCCAGCAAATT  250

seq1  GGGGTTTTCTTTTTCTTTTTTAAAATATTTTTATTATTATATATTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTCTTTTTCTTTTTTAAAATATTTTTATTATTATATATTTTCAT  300

seq1  CAATTACATTTAGAATGCTATCCCAAAAGTCCCCCATACCCTCCCCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACATTTAGAATGCTATCCCAAAAGTCCCCCATACCCTCCCCACCA  350

seq1  AATTGGGGTTTTCTAAGCAGACATTTGCTTTTTCTTTTTCTCTTGGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGGTTTTCTAAGCAGACATTTGCTTTTTCTTTTTCTCTTGGTTTA  400

seq1  TTTTGTTGTTTTTAAGATATAGTATGATTCAACCCCTAGGCTGGCCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTTTTTAAGATATAGTATGATTCAACCCCTAGGCTGGCCTTGA  450

seq1  ATTC  454
      ||||
seq2  ATTC  454

seq1: chr6_148880809_148881225
seq2: B6Ng01-220J13.g_661_980 (reverse)

seq1  AAAATC-AAAACAAAAAACAAAAAGGAAAGGTACATATGCACTCAATCAA  49
      |||||| |||||||||||||||||               ||||  |||  
seq2  AAAATCAAAAACAAAAAACAAAAA---------------CACTTCATCTC  35

seq1  ACAAACCAAAATCAATGTCTGTCTCATCAAGTGCAGGTGTGCACATGTAG  99
        |    || |||  | ||| ||| |  ||         | || ||    
seq2  TTA----AATATC-CTTTCTCTCTGA--AA---------TCCAAAT----  65

seq1  CTTTTACTATGAAAAATGGTTC-AGTATTCAATATTTTATTCAAGTATCT  148
      |||||        |||  |||| || | ||          ||    | ||
seq2  CTTTT-------TAAA--GTTCAAGGACTC----------TC----AGCT  92

seq1  CTTGGAAAGTTAACATACCCTGTTAAGTTTCAGGGCAGAATATTTAAGTA  198
       | ||    ||  |||| |     ||         || ||||   || ||
seq2  GTGGG---CTTCCCATAAC-----AA--------ACA-AATAAAAAAATA  125

seq1  TACTACTACCATCCTCCTCAGCAAGTTAAACGATAACTGTTTTCAAATAC  248
       | ||||  | ||| | |||  | |  | | |                  
seq2  GA-TACTTTCTTCC-CTTCAAGAGGGCACAGG------------------  155

seq1  AATGCAGAGCCGGGCGGTGGTGACGCATGCCTTTAATCCCAGCACTCGGG  298
             ||| |||| |||||| |||| ||||||||||||||||||||||
seq2  ------CAGCAGGGC-GTGGTGGCGCACGCCTTTAATCCCAGCACTCGGG  198

seq1  AGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAG  348
      |||||||||||||  ||||||||||||||||| |||||||||||||||||
seq2  AGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGACAGCCTGGTCTACAAAG  248

seq1  TGAGTTCCAGGACCGCCAGGGCTATACAGAGAAACCCTGTCTCGAAA---  395
      ||| ||||||||| |||||||||| ||||||||||||||||| ||||   
seq2  TGATTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAC  298

seq1  AAACCAAAAAAAAAAAAAAAAA  417
      ||||||||||||||||||||||
seq2  AAACCAAAAAAAAAAAAAAAAA  320