BAC Information

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BAC

Clone NameB6Ng01-220O03
Chromosome11 (Build37)
Map Location 20,998,475 - 20,999,588
singlet/doubletsinglet
Overlap genePeli1
Upstream geneActr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
Downstream geneVps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1, Ehbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220O03.bB6Ng01-220O03.g
ACCGA036329GA036330
length1,1171,188
definitionB6Ng01-220O03.b B6Ng01-220O03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccatctctgtcctagaagccatcaactgtcagtaacccttcag
gtctaggggtttaggcccctccatgttggaatgttgactggcttgatctt
gtgcagaaagctgtagctgtggtgagttcatgagcacatctgtcctgtca
agtccagaagatagtttcattctcgtgcttcctggctcctagttctttca
ttctttctgccttctcttctgcagtggtccttgagcctggaggagatagg
tagggtagatgtctcatttttggctgatcacttcactgatcactctttgt
actttgacaaattgtgaatttctgcattaactgccatacactgcacaaaa
gaaacttcgctgattgaggtctgagagctgccctaatctgggcttagaga
tatgaatttagagagcagttcagtactatatcattttagcagaacagtag
ttgtggtttctggaccctatgacctctcaatcataggttgaaataagtga
atcttatccaaatgtttaaacactccgaagaaattaaccattagagagtt
ttaggaaatttatccaacaacagtgtatatgtagatattgttaattttga
aaactcaatgctactttgtactgtagttaatatttccaaacagagaaatg
aaacttatttagatgctttaatgaaagttacatttttcggggctggagag
atggctcagcagttaagagcactgactgctcctccaaaggtcctgagttc
aaatcccaggaaccacatggtggctcacaaccttatataatgagatctga
tgccttctgtgtgtctgaagatacctacagtgtacttataataaataaat
aaatacataaataaattttaaaattacatttttctacttatgtccaataa
ggggaaatactgtcttttcattcatatttttagaatttaatggcagtaat
cagaatttatgaactttaattttatgataaattatgtattagccgttaaa
actataacatgcacaatctgtactaagaatactttatggaattcaagaag
aaaaactttagaaccatggctacgtctcataaaccttgagaagggctcaa
tgctggatgaaacgctg
gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaatttcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacgggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagctagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgtccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactaggccggggcctagcaaac
acagatgtggacgctcacagtcagctaatggatggatcacaggctcccaa
tggaggagctagagaaagtacccaagagctaaagggatctgcaccctaat
agtggacacattatgactaccagtaccccggagctcttgactctagctgc
atatatatcaaaagaatggctagtcgacatcactgaaagaggaggcccaa
tggaactgcaacctttatatttgcccagttacaggaacgtcaagtcaaag
gggaatggggtggcacgagggagagattgggattatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_20998475_20999588
seq2: B6Ng01-220O03.b_44_1160

seq1  GAATTCACCATCTCTGTCCTAGAAGCCATCAACTGTCAGTAACCCTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCTCTGTCCTAGAAGCCATCAACTGTCAGTAACCCTTCAG  50

seq1  GTCTAGGGGTTTAGGCCCCTCCATGTTGGAATGTTGACTGGCTTGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGGGTTTAGGCCCCTCCATGTTGGAATGTTGACTGGCTTGATCTT  100

seq1  GTGCAGAAAGCTGTAGCTGTGGTGAGTTCATGAGCACATCTGTCCTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAAGCTGTAGCTGTGGTGAGTTCATGAGCACATCTGTCCTGTCA  150

seq1  AGTCCAGAAGATAGTTTCATTCTCGTGCTTCCTGGCTCCTAGTTCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGAAGATAGTTTCATTCTCGTGCTTCCTGGCTCCTAGTTCTTTCA  200

seq1  TTCTTTCTGCCTTCTCTTCTGCAGTGGTCCTTGAGCCTGGAGGAGATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGCCTTCTCTTCTGCAGTGGTCCTTGAGCCTGGAGGAGATAGG  250

seq1  TAGGGTAGATGTCTCATTTTTGGCTGATCACTTCACTGATCACTCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGATGTCTCATTTTTGGCTGATCACTTCACTGATCACTCTTTGT  300

seq1  ACTTTGACAAATTGTGAATTTCTGCATTAACTGCCATACACTGCACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGACAAATTGTGAATTTCTGCATTAACTGCCATACACTGCACAAAA  350

seq1  GAAACTTCGCTGATTGAGGTCTGAGAGCTGCCCTAATCTGGGCTTAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCGCTGATTGAGGTCTGAGAGCTGCCCTAATCTGGGCTTAGAGA  400

seq1  TATGAATTTAGAGAGCAGTTCAGTACTATATCATTTTAGCAGAACAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTAGAGAGCAGTTCAGTACTATATCATTTTAGCAGAACAGTAG  450

seq1  TTGTGGTTTCTGGACCCTATGACCTCTCAATCATAGGTTGAAATAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTTCTGGACCCTATGACCTCTCAATCATAGGTTGAAATAAGTGA  500

seq1  ATCTTATCCAAATGTTTAAACACTCCGAAGAAATTAACCATTAGAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCCAAATGTTTAAACACTCCGAAGAAATTAACCATTAGAGAGTT  550

seq1  TTAGGAAATTTATCCAACAACAGTGTATATGTAGATATTGTTAATTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAATTTATCCAACAACAGTGTATATGTAGATATTGTTAATTTTGA  600

seq1  AAACTCAATGCTACTTTGTACTGTAGTTAATATTTCCAAACAGAGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAATGCTACTTTGTACTGTAGTTAATATTTCCAAACAGAGAAATG  650

seq1  AAACTTATTTAGATGCTTTAATGAAAGTTACATTTTTCGGGGCTGGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATTTAGATGCTTTAATGAAAGTTACATTTTTCGGGGCTGGAGAG  700

seq1  ATGGCTCAGCAGTTAAGAGCACTGACTGCTCCTCCAAAGGTCCTGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGCAGTTAAGAGCACTGACTGCTCCTCCAAAGGTCCTGAGTTC  750

seq1  AAATCCCAGGAACCACATGGTGGCTCACAACCTTATATAATGAGATCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAGGAACCACATGGTGGCTCACAACCTTATATAATGAGATCTGA  800

seq1  TGCCTTCTGTGTGTCTGAAGATACCTACAGTGTACTTATAATAAATAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTGTGTGTCTGAAGATACCTACAGTGTACTTATAATAAATAAAT  850

seq1  AAATACATAAATAAATTTTAAAATTACATTTTTCTACTTATGTCCAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAAATAAATTTTAAAATTACATTTTTCTACTTATGTCCAATAA  900

seq1  GGGGGAAATACTGTCTTTTCATTCATATTTTTAGAATTTAATGGCAGTAA  950
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGGGAAATACTGTCTTTTCATTCATATTTTTAGAATTTAATGGCAGTAA  949

seq1  TCAGAATTTATGAACTTTAATTTTATGATAAATTATGTATTAGCCGTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTTATGAACTTTAATTTTATGATAAATTATGTATTAGCCGTTAA  999

seq1  AACTAT-ACATGCAC-ATCTGTACTAAGAATACTTTATGG-ATTCAGGAA  1047
      |||||| |||||||| |||||||||||||||||||||||| ||||| |||
seq2  AACTATAACATGCACAATCTGTACTAAGAATACTTTATGGAATTCAAGAA  1049

seq1  GACAAACTTTAG-ACCATGGCTACGTTCCTTCAT-AACTTTGAGAAGGGC  1095
      || ||||||||| |||||||||||||    |||| ||| |||||||||||
seq2  GAAAAACTTTAGAACCATGGCTACGT---CTCATAAACCTTGAGAAGGGC  1096

seq1  TCAGTGCT-GATG-AACGCTG  1114
      ||| |||| |||| |||||||
seq2  TCAATGCTGGATGAAACGCTG  1117